Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq15 187 2e-42 seq14 113 4e-20 >seq15 Length=171247636 Score = 187 bits (206), Expect = 2e-42 Identities = 553/843 (66%), Gaps = 20/843 (2%) Strand=Plus/Minus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||||||||| ||||| || |||||||| | || || ||||| || || ||||| Sbjct 39550247 ATGTACAAAAAGGCCGAAGCCTCATTCTGGACCGCAGAAGAAGTCGACTTATCACAAGAC 39550188 Query 61156 ATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 | ||||||| | || | ||| | |||| || ||||||| || || | || Sbjct 39550187 CAACAACACTGGGACTCCTTAACCGA-CAACGAACGTCACTTCATTACTCACGTACTCGC 39550129 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| || || || ||||| || || || || | | || ||| | | || Sbjct 39550128 CTTCTTCGCTGCATCAGACGGCATTGTATTGGAAAACCTCGCTGGCCGCTTCATGAAAGA 39550069 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || || | || ||||||||| || |||||||| || || || || |||||| |||| Sbjct 39550068 AGTACAGATCTCCGAGGCGCGTGCCTTTTACGGCTTTCAAATCGCGATTGAGAATATCCA 39550009 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 ||| || ||||||||| | || | || ||||||||| || | ||| | || Sbjct 39550008 CTCTGAAATGTACAGTTTGCTGTTGGAATCGTACATCAAAGATTCTGTTGAAAAAAACCG 39549949 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 |||||| ||| || ||||| ||||| || || || ||| ||||||| | || Sbjct 39549948 TTTGTTCCGTGCTATTGAGACAATACCATGTGTACAGAAAAAGGCGAATTGGGCGATGAA 39549889 Query 61455 TTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 |||||| | || || | | |||| || || | | || ||||| || || Sbjct 39549888 GTGGATCGACGGTTCA---GAATCGTTTGCAGAGAGAATAATTGCCTTTGCCTGTGTTGA 39549832 Query 61515 GGGTGTATTTTTCAGTGG-ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTA 61573 || |||| || ||| | | |||| || || || ||||||||||| ||||| | | Sbjct 39549831 AGGAATATTCTTTTCTGGTAGCTTTTGT-GCTATTTTCTGGTTGAAGAAGCGTGGGTTGA 39549773 Query 61574 TGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATT 61633 |||| ||| | || ||| || ||||||||||| || |||||||| ||||||| |||| Sbjct 39549772 TGCCGGGTTTAACGTTCTCGAACGAGTTGATATCGCGAGACGAGGGTTTGCATTGCGATT 39549713 Query 61634 TTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCG---GAGGAGCGTGTGG 61690 | ||| ||||| | | | || ||||| || | |||||||| ||| Sbjct 39549712 TCGCTTGCTTGCTGTATA------AGTTGTTGAATACAAAGTTGAGTGAGGAGCGGGTGA 39549659 Query 61691 GTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCG 61750 | |||||| || ||||| || || ||| ||| | ||| || || ||| Sbjct 39549658 AAGGGATTGTGGCGGATGCGGTGGAGATTGAGAGGGAGTTTGTTTGTGATGCCTTACCCT 39549599 Query 61751 TCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACC 61810 | | || |||||| |||| | ||| ||||||||||| |||||||| || Sbjct 39549598 GTGGGTTGGTTGGGATGAATGGTGGGTTGATGAGTCAGTATATTGAGTTTGTTGCGGATA 39549539 Query 61811 GTCTGTT--GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTT 61868 | || | ||||| || || | || || | ||| | || || ||||||| Sbjct 39549538 GGTTGCTGGGGTCG-TTAGGATGTG-AGAAATTGTATGGCGTGTCGAATCCGTTTGATTG 39549481 Query 61869 CATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| |||||||| || | || |||||||||||||| ||||| | || || || || Sbjct 39549480 GATGGAGTTGATTTCGTTGCAGGGGAAGACGAATTTTTTTGAGAAGAGGGTTGGGGAGTA 39549421 Query 61929 TCA 61931 ||| Sbjct 39549420 TCA 39549418 >seq14 Length=174509413 Score = 113 bits (124), Expect = 4e-20 Identities = 534/839 (64%), Gaps = 12/839 (1%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 ||||||||||| || || || || |||||||| | || || || || | || ||||| Sbjct 142132540 ATGTACAAAAAAGCCGAGGCCTCATTCTGGACAGCAGAAGAAGTAGACCTCTCACAAGAC 142132599 Query 61156 ATGAATGACTGGGAG-CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGC 61214 | | ||||| | | | ||| ||| |||| || ||||| | || || | || Sbjct 142132600 CACCGTCAATGGGAAACCCTAACCGA-CGGCGAACGCCACTTCATCACTCACGTCCTCGC 142132658 Query 61215 GTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGA 61274 ||||| |||||||| ||||| |||||| || || | | || ||| | |||| Sbjct 142132659 CTTCTTCGCCGCTTCAGACGGCATCGTCCTCGAAAACCTCGCCGGCCGATTCATGAAGGA 142132718 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || || | | ||||||||| ||||||||||| || || ||||| || || |||| Sbjct 142132719 AGTCCAGATCGCCGAGGCGCGTGCGTTCTACGGCTTTCAAATCGCCATTGAAAACATCCA 142132778 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 ||| |||||||||||| | | |||| | ||||||| || | ||| | || Sbjct 142132779 CTCCGAGATGTACAGTCTGTTACTCGAATCCTACATCAAAGATTCCACTGAAAAGAATCG 142132838 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 | || || || || || || || | || |||||| ||||||| | || Sbjct 142132839 TCTATTTCGCGCGATTGAAACCATCCCCTGCATCCAGAAGAAAGCCAATTGGGCGCTGAA 142132898 Query 61455 TTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 |||||| | | | | | | |||| || || | | || ||||| ||||| Sbjct 142132899 ATGGATCGACGG---ATCCGAATCGTTTGCAGAGCGGATCATTGCTTTTGCCTGCGTCGA 142132955 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 || |||| ||| ||| || || || || ||| |||| || || || | || Sbjct 142132956 AGGAATATTCTTCTCAGGAAGCTTCTGTGCGATATTCTGGCTGAAAAAGCGCGGGTTAAT 142133015 Query 61575 GCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTT 61634 ||| || ||||| ||| || || || || ||||| || || || | || || ||||| Sbjct 142133016 GCCGGGACTGACATTCTCAAACGAATTAATCTCACGAGATGAAGGTTTACACTGCGATTT 142133075 Query 61635 TGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGA 61694 || ||| | | || | | || || | | |||||||| ||| | Sbjct 142133076 CGCGTGCTTGATCTACA---GTTTGTTGAAGATGAAGCTAACCGAGGAGCGAGTGAAGGC 142133132 Query 61695 GATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCT- 61753 |||||| || ||||| || || | ||| ||| || ||| || ||| |||| | Sbjct 142133133 GATTGTGGCGGATGCGGTGGAGATTGAGCGGGAGTTTGTGTGTGATGCGTTG-CCGTGTG 142133191 Query 61754 CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTC 61813 | | || |||||| | || | ||| ||| || || ||||| || || || Sbjct 142133192 GGTTGGTGGGGATGAATGGGGGTTTGATGAGTACGTACATAGAGTTTGTGGCGGATCGGT 142133251 Query 61814 TGTTG-GTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATG 61872 ||||| | || ||||||| | | | ||| || | | ||||| ||||||| ||| Sbjct 142133252 TGTTGAATGCGTTGGGGTATG-GGAAGTTGTATGATGTGCAGAACCCGTTTGATTGGATG 142133310 Query 61873 GACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 || |||| ||| || | || |||||||||||||| ||||| | || || || ||||| Sbjct 142133311 GAGTTGATATCGTTGCAGGGGAAGACGAATTTTTTTGAGAAGAGGGTTGGGGAGTATCA 142133369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397560596289920