Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_033276.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq16 136 7e-29 seq13 93.3 7e-16 seq11 82.4 1e-12 >seq16 Length=188620566 Score = 136 bits (150), Expect = 7e-29 Identities = 195/268 (73%), Gaps = 10/268 (4%) Strand=Plus/Minus Query 1714 CTTTAATATGAACTGGCTTTCCGTATTT-CGTGTTGCTTTGCCAGTCCCTTTGGGCCCCC 1772 |||| || ||||| || |||| ||| || | |||||| ||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1773 ATGAATTCTTTGAAGTGTTTTAGATAATGCGGATCGACGTCATCAATGACGTTGTA--CC 1830 | ||||| || ||||||||| | | || || | |||| |||||| ||||| || || Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1831 AGGCCTCATTACTGTAGACCTTTGGACTAAGGTCTAAGTGACCACACAAATAATTATGTG 1890 | | || ||| | | ||| | ||| | | |||||| | ||||| |||||||||||| Sbjct 2249214 A--CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTC 2249157 Query 1891 GACCCAGTGACCTAGCCCACATTGTCTTCCCCGTACGACTATCACCTTCTATCACTAT-- 1948 |||| ||| || |||||||||||||| || || | ||||||||| || | ||| Sbjct 2249156 TTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTG 2249097 Query 1949 ACTTATGGGTCTCAATGGCCGCGCAGCG 1976 ||| | ||||||||||| || | |||| Sbjct 2249096 ACTGA--GGTCTCAATGGGCGTGAAGCG 2249071 >seq13 Length=197258317 Score = 93.3 bits (102), Expect = 7e-16 Identities = 204/303 (67%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 1679 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATATGAACTGGCTTTCCGTA 1738 |||||| ||||| || | ||| || || || || ||||| | | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1739 TTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGTTTTAGATA 1798 ||| ||| ||||| | ||| || || || || ||||| |||| || | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1799 ATGCGGATCGACGTCATCAATGACGTTGTACCAGGCCTCATTACTGTAGACCTTTGGAC- 1857 || || | |||||| |||| |||||| | || || | |||| ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1858 -TAAGGTCTAAGTGACCACACAAATAATTATGTGGACCCAGTGACCTAGCCCACATTGTC 1916 | ||||| | |||||||| | || |||||| |||| || || ||||||||||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1917 TTCCCCGTACGACTATCACCTTCTATCACTAT--ACTTATGGGTCTCAATGGCCGCGCAG 1974 || || || | ||||| |||||| | ||| ||| | ||||||| |||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCAG 89851497 Query 1975 CGG 1977 ||| Sbjct 89851498 CGG 89851500 >seq11 Length=168460249 Score = 82.4 bits (90), Expect = 1e-12 Identities = 200/301 (66%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 1679 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATATGAACTGGCTTTCCGTA 1738 |||||| ||||| || | ||| || || || || ||||| | | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1739 TTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGTTTTAGATA 1798 ||| || ||||| | | ||| || || || || ||||| |||| | | || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1799 ATGCGGATCGACGTCATCAATGACGTTGTACCAGGCCTCATTACTGTAGACCTTTGGACT 1858 || || | |||||| |||| |||||| || | || | |||| ||| | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1859 AAGGTCTAAGTGACCACACAAATAATTATGTGGACCCAGTGACCTAGCCCACATTGTCTT 1918 |||| | |||||||| | || |||||| |||| || || ||||||||||| || Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1919 CCCCGTACGACTATCACCTTCTATCACTAT--ACTTATGGGTCTCAATGGCCGCGCAGCG 1976 | || | || ||||| ||| | | | |||| ||||||| |||||||||||| Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTT--GGTCTCATCGGCCGCGCAGCG 165527307 Query 1977 G 1977 | Sbjct 165527306 G 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8691058898368