Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05]
6,074 sequences; 234,039,246 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq29 242 6e-62
seq5603 80.6 4e-13
>seq29
Length=1368273
Score = 242 bits (268), Expect = 6e-62
Identities = 160/172 (93%), Gaps = 10/172 (6%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1367873 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 1367816
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367815 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 1367756
Query 121 CCCGG------ACCTGTCGGCCAAGGTGATAGACTCGTTG-AATAC-ATCAG 164
||||| ||||||||||||||| |||||||||||| ||||| |||||
Sbjct 1367755 CCCGGCCGGGCACCTGTCGGCCAAGGCTATAGACTCGTTGAAATACTATCAG 1367704
Score = 241 bits (266), Expect = 2e-61
Identities = 190/225 (84%), Gaps = 2/225 (1%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||| || || ||| |||||||| |||| |||||||||| ||||||||| ||||| |
Sbjct 1317570 GTACAAAAGGTAGAGACATAGTCAACACGAG-TTGATGACTCACGCTTACTAAGAATT-C 1317513
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120
|||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1317512 CTCGTTGAAGACCATCAATTGCAATGATCTATCCCAGTCAAAATGAAATTTCAAAGATTA 1317453
Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180
||| ||| || | |||| ||| ||||||||||||||| | |||||| || || ||
Sbjct 1317452 CCCAAGCCTATCATCTAAGGCTATACACTCGTTGAATACATTAATGTAGCACGGATGTGG 1317393
Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
|| | ||||||||| |||||||||||||| ||||||||||||||
Sbjct 1317392 CCTATAACATCTAAAAGCATCACAGACCTGATATTGCCTCAAACT 1317348
>seq5603
Length=3723
Score = 80.6 bits (88), Expect = 4e-13
Identities = 49/52 (94%), Gaps = 0/52 (0%)
Strand=Plus/Minus
Query 163 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 214
|||||||||||||||||||||| ||||||||||||||||||||||| | |||
Sbjct 2370 AGTGTAGCGCGCGTGCGGCCCAAAACATCTAAGGGCATCACAGACCAGGTAT 2319
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751955750910
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |