Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq29 242 6e-62 seq5603 80.6 4e-13 >seq29 Length=1368273 Score = 242 bits (268), Expect = 6e-62 Identities = 160/172 (93%), Gaps = 10/172 (6%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 1367873 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 1367816 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1367815 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 1367756 Query 121 CCCGG------ACCTGTCGGCCAAGGTGATAGACTCGTTG-AATAC-ATCAG 164 ||||| ||||||||||||||| |||||||||||| ||||| ||||| Sbjct 1367755 CCCGGCCGGGCACCTGTCGGCCAAGGCTATAGACTCGTTGAAATACTATCAG 1367704 Score = 241 bits (266), Expect = 2e-61 Identities = 190/225 (84%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| || || ||| |||||||| |||| |||||||||| ||||||||| ||||| | Sbjct 1317570 GTACAAAAGGTAGAGACATAGTCAACACGAG-TTGATGACTCACGCTTACTAAGAATT-C 1317513 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| Sbjct 1317512 CTCGTTGAAGACCATCAATTGCAATGATCTATCCCAGTCAAAATGAAATTTCAAAGATTA 1317453 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| ||| || | |||| ||| ||||||||||||||| | |||||| || || || Sbjct 1317452 CCCAAGCCTATCATCTAAGGCTATACACTCGTTGAATACATTAATGTAGCACGGATGTGG 1317393 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 || | ||||||||| |||||||||||||| |||||||||||||| Sbjct 1317392 CCTATAACATCTAAAAGCATCACAGACCTGATATTGCCTCAAACT 1317348 >seq5603 Length=3723 Score = 80.6 bits (88), Expect = 4e-13 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 163 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 214 |||||||||||||||||||||| ||||||||||||||||||||||| | ||| Sbjct 2370 AGTGTAGCGCGCGTGCGGCCCAAAACATCTAAGGGCATCACAGACCAGGTAT 2319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751955750910