Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 3e-18 >seq1 Length=15579451 Score = 98.7 bits (108), Expect = 3e-18 Identities = 176/253 (70%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||| | || || ||||||| || | || ||||||| | ||| || Sbjct 6750137 GCATCTTCGTAAATATGTCTATTTCACGGAATATCTCTCCGAGACAGTGTTCAGATCATT 6750196 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 | ||| || ||| || | |||||||| | ||| ||||||||||||||||||||| | Sbjct 6750197 ATGCCTTTTGTGTGAGTTGAAACTTACCTAAAAAG-AATTTCGCTACCTTAGGACCGGTG 6750255 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 | | |||| |||||||| |||||||||| || | | ||| | | | | || | Sbjct 6750256 TAGATACGACCGCCGTTCACCGGGGCTTTCATTCAAACCTT---ATAACCCTTCTCCTT- 6750311 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 ||||| |||| |||| ||||||| |||| | |||||| || | || | | || || Sbjct 6750312 -TTTAACTTTCCAGCACTGGGCAGGTGTCAGA--CTATACATCGAGTTACCTCTTAGCGA 6750368 Query 253 AGTGCTGTGTTTT 265 ||| ||||||||| Sbjct 6750369 AGTCCTGTGTTTT 6750381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260723419008