Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05]
6,074 sequences; 234,039,246 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq29 140 5e-31
seq5603 80.6 4e-13
>seq29
Length=1368273
Score = 140 bits (154), Expect = 5e-31
Identities = 101/117 (86%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| ||| |||| ||||| | | || |||| | ||||||||| |||||||||||| || |
Sbjct 1314178 CTAGTTAACAGGGTAAGGCCACATTTGTTAACAGAATTAACCTGACAAATCACTCAACTA 1314119
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||| |||| ||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1314118 ACTAACAACGACCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAATTTGTC 1314062
Score = 111 bits (122), Expect = 3e-22
Identities = 159/218 (73%), Gaps = 7/218 (3%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | | | |||||| || || |||| | ||||||||| ||||||||||
Sbjct 1317426 ACTCGTTGAATACATTAATGTAGCACGGATGTGGCCTATAACATCTAAAAGCATCACAGA 1317367
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119
|||| ||||||||||||| || || || |||| | ||||||| | || |||| ||
Sbjct 1317366 CCTGATATTGCCTCAAAC-TCTGTTAGC-CTAAGCGACCATAGTCCTTTCAAAAAGCTAG 1317309
Query 120 CCACCAACCATAGTCGATGGGGCTA-TTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178
||| || || | | | || |||||| || ||||||| || |||| ||||
Sbjct 1317308 CCATGAAGGATCACC--TCTGAATAGCTTAGCAAGTCGAGGTCTCATTTGTTAATAGAAT 1317251
Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216
|||| |||||||||| |||| |||||||||| ||| ||
Sbjct 1317250 TAACTAGACAAATCAATCCAACAACTAAGAATGGCTAT 1317213
>seq5603
Length=3723
Score = 80.6 bits (88), Expect = 4e-13
Identities = 49/52 (94%), Gaps = 0/52 (0%)
Strand=Plus/Minus
Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69
|||||||||||||||||||||| ||||||||||||||||||||||| | |||
Sbjct 2370 AGTGTAGCGCGCGTGCGGCCCAAAACATCTAAGGGCATCACAGACCAGGTAT 2319
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796753114794
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |