Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq29 140 5e-31 seq5603 80.6 4e-13 >seq29 Length=1368273 Score = 140 bits (154), Expect = 5e-31 Identities = 101/117 (86%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| ||| |||| ||||| | | || |||| | ||||||||| |||||||||||| || | Sbjct 1314178 CTAGTTAACAGGGTAAGGCCACATTTGTTAACAGAATTAACCTGACAAATCACTCAACTA 1314119 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| |||| ||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 1314118 ACTAACAACGACCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAATTTGTC 1314062 Score = 111 bits (122), Expect = 3e-22 Identities = 159/218 (73%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | | | |||||| || || |||| | ||||||||| |||||||||| Sbjct 1317426 ACTCGTTGAATACATTAATGTAGCACGGATGTGGCCTATAACATCTAAAAGCATCACAGA 1317367 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||| ||||||||||||| || || || |||| | ||||||| | || |||| || Sbjct 1317366 CCTGATATTGCCTCAAAC-TCTGTTAGC-CTAAGCGACCATAGTCCTTTCAAAAAGCTAG 1317309 Query 120 CCACCAACCATAGTCGATGGGGCTA-TTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 ||| || || | | | || |||||| || ||||||| || |||| |||| Sbjct 1317308 CCATGAAGGATCACC--TCTGAATAGCTTAGCAAGTCGAGGTCTCATTTGTTAATAGAAT 1317251 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216 |||| |||||||||| |||| |||||||||| ||| || Sbjct 1317250 TAACTAGACAAATCAATCCAACAACTAAGAATGGCTAT 1317213 >seq5603 Length=3723 Score = 80.6 bits (88), Expect = 4e-13 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 18 AGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 69 |||||||||||||||||||||| ||||||||||||||||||||||| | ||| Sbjct 2370 AGTGTAGCGCGCGTGCGGCCCAAAACATCTAAGGGCATCACAGACCAGGTAT 2319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796753114794