Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq15 86.0 2e-14 seq2 80.6 1e-12 >seq15 Length=6219335 Score = 86.0 bits (94), Expect = 2e-14 Identities = 115/159 (72%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 || |||||||||||||||||| ||| | | | ||| |||| ||||||| || |||| Sbjct 4102892 AACGCATTTCGGGGAGAACCAACTAGCTCTAGGTTCACGTGGCATTTCACCT-TAACCAC 4102834 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCG 266 | |||||| || | | |||||| | ||| | ||| | |||| | || | |||| | Sbjct 4102833 AACTCATCCGCTGATTCTTCAACATCAGTCGATTCAGACCTCTATTTAGTTTCACCCAAG 4102774 Query 267 CTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 ||| | | || |||||||||||||| | |||||||| Sbjct 4102773 CTTTATCTTGGTCATGGATAGATCACCAAGGTTCGGGTC 4102735 >seq2 Length=14367614 Score = 80.6 bits (88), Expect = 1e-12 Identities = 106/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTT-GATTGGCCTTTCACCCCTATCCA 205 || ||||||| |||||||| ||||| | ||| || |||| ||||||| ||| || Sbjct 8275356 AACGCATTTCAGGGAGAACTAGCTAGTTTTAGGTTCAGAGTGGCATTTCACCTCTAATCA 8275415 Query 206 CAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGC 265 || |||||| | | | ||| || | ||| | ||||| ||||||| || | ||| Sbjct 8275416 CAACTCATCCATTGATTCTTCGACATCAGTCGTTTCGGACCTCCACTTAGTTTCACCAAA 8275475 Query 266 GCTTCAACCTGCCCATGGATAGATCA 291 |||||| |||| ||||||||||||| Sbjct 8275476 GCTTCATCCTGGTCATGGATAGATCA 8275501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817489598976