Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq29 161 2e-37 seq5603 80.6 5e-13 >seq29 Length=1368273 Score = 161 bits (178), Expect = 2e-37 Identities = 131/158 (83%), Gaps = 7/158 (4%) Strand=Plus/Plus Query 177 CAACGAGTTCATCACCTTGGCCGGAAGGT------CTGGGTAATCTTGTTAAACTCTGTC 230 |||||||| || ||||||||| |||| | |||||||||| | ||| | || Sbjct 1367716 CAACGAGTCTATAGCCTTGGCCGACAGGTGCCCGGCCGGGTAATCTT-TGAAATTTCATC 1367774 Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGT 290 ||| |||||||||| |||||||||| ||| ||||||||||||||| ||||||||||||| Sbjct 1367775 GTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGA 1367834 Query 291 GTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||| |||||||| ||||||||||||||||||| Sbjct 1367835 GTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 1367872 Score = 156 bits (172), Expect = 8e-36 Identities = 169/223 (76%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 |||||||||||||| |||||||||||||| ||||||||| | |||| || || ||||| Sbjct 1317348 AGTTTGAGGCAATATCAGGTCTGTGATGCTTTTAGATGTTATAGGCCACATCCGTGCTAC 1317407 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | | | | |||||||| || |||| | | ||| ||||||||||| | ||| | Sbjct 1317408 ATTAATGTATTCAACGAGTGTATAGCCTTAGATGATAGGCTTGGGTAATCTT-TGAAATT 1317466 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | || |||||||| |||||||||| || ||||||||||||||| | ||||||| Sbjct 1317467 TCATTTTGACTGGGATAGATCATTGCAATTGATGGTCTTCAACGAGGAATTCTTAGTAAG 1317526 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || | ||||||| | || ||||| || ||| || || |||||| Sbjct 1317527 CGTGAGTCATCAACTCGTGTTGACTATGTCTCTACCTTTTGTA 1317569 >seq5603 Length=3723 Score = 80.6 bits (88), Expect = 5e-13 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 117 ATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168 ||| | ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 2319 ATACCTGGTCTGTGATGCCCTTAGATGTTTTGGGCCGCACGCGCGCTACACT 2370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947142467072