Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05]
6,074 sequences; 234,039,246 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq29 161 2e-37
seq5603 80.6 5e-13
>seq29
Length=1368273
Score = 161 bits (178), Expect = 2e-37
Identities = 131/158 (83%), Gaps = 7/158 (4%)
Strand=Plus/Plus
Query 177 CAACGAGTTCATCACCTTGGCCGGAAGGT------CTGGGTAATCTTGTTAAACTCTGTC 230
|||||||| || ||||||||| |||| | |||||||||| | ||| | ||
Sbjct 1367716 CAACGAGTCTATAGCCTTGGCCGACAGGTGCCCGGCCGGGTAATCTT-TGAAATTTCATC 1367774
Query 231 GTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGT 290
||| |||||||||| |||||||||| ||| ||||||||||||||| |||||||||||||
Sbjct 1367775 GTGATGGGGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGA 1367834
Query 291 GTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||||||||| |||||||| |||||||||||||||||||
Sbjct 1367835 GTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 1367872
Score = 156 bits (172), Expect = 8e-36
Identities = 169/223 (76%), Gaps = 1/223 (0%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|||||||||||||| |||||||||||||| ||||||||| | |||| || || |||||
Sbjct 1317348 AGTTTGAGGCAATATCAGGTCTGTGATGCTTTTAGATGTTATAGGCCACATCCGTGCTAC 1317407
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
| | | | |||||||| || |||| | | ||| ||||||||||| | ||| |
Sbjct 1317408 ATTAATGTATTCAACGAGTGTATAGCCTTAGATGATAGGCTTGGGTAATCTT-TGAAATT 1317466
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
| || |||||||| |||||||||| || ||||||||||||||| | |||||||
Sbjct 1317467 TCATTTTGACTGGGATAGATCATTGCAATTGATGGTCTTCAACGAGGAATTCTTAGTAAG 1317526
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|| | ||||||| | || ||||| || ||| || || ||||||
Sbjct 1317527 CGTGAGTCATCAACTCGTGTTGACTATGTCTCTACCTTTTGTA 1317569
>seq5603
Length=3723
Score = 80.6 bits (88), Expect = 5e-13
Identities = 49/52 (94%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 117 ATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACT 168
||| | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2319 ATACCTGGTCTGTGATGCCCTTAGATGTTTTGGGCCGCACGCGCGCTACACT 2370
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947142467072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |