Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 6e-15 >seq2 Length=14367614 Score = 87.8 bits (96), Expect = 6e-15 Identities = 104/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 49 TGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTA 108 ||||||| ||||| ||||||||||| | ||| | || |||||||||||| | ||| Sbjct 8275501 TGATCTATCCATGACCAGGATGAAGCTTTGGTGAAACTAAGTGGAGGTCCGAAACGACTG 8275442 Query 109 ATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAAC-AAACTTGGAA 167 |||| ||| ||| | ||||||| |||| ||| ||||||| || | | ||| | || Sbjct 8275441 ATGTCGAAGAATCAATGGATGAGTTGTGATTAGAGGTGAAATGCCACTCTGAACCTAAAA 8275382 Query 168 ATAGCTGGTTCTCTCCGAAA 187 ||||| |||||| | |||| Sbjct 8275381 CTAGCTAGTTCTCCCTGAAA 8275362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689497373696