Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Herrania_20umbratica_20[refseq_20GCF_5F002168275.1_202017-06-05] 6,074 sequences; 234,039,246 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq29 286 1e-74 seq9 120 9e-25 >seq29 Length=1368273 Score = 286 bits (316), Expect = 1e-74 Identities = 375/511 (73%), Gaps = 19/511 (4%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||| |||||||||| | || || || ||| ||| ||||||||||| |||||| Sbjct 1313322 TACTTATTCCAATTATCAAACTCATAA-AGCTAGATATTGTTATTTATTGTCCTTACCTC 1313264 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 | |||| |||||||||||||| | |||| || |||| | || ||||| |||| Sbjct 1313263 CTTATGTCAAGATTGGGTAATTTGTGTGCCTATTGTTTTCCCTATATTTGGTAATTGTTT 1313204 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 | |||| |||||| | |||| ||||||||||||||||| ||| || | ||| Sbjct 1313203 TTTAGGCCCCCTCTTCAGAATTGAACCCTAATTCCCCGTCACC-------ACTACAGTAA 1313151 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC 241 | || ||||||||||| |||| |||||| || |||||||| ||||| ||| |||| | | Sbjct 1313150 GACATTATCCTACCATTGAAATTTGATAAGGTAGAAATTTCAATGACGCATTGCCGACAC 1313091 Query 242 -AAGGCCATGCGATTCGTTAAGTTATTATGAATC-----ACCAAGGAGCCCCGAAGGGCG 295 || ||| ||| |||||| || |||| | |||| | ||| |||| | || | Sbjct 1313090 AAAAGCCGTGCAATTCGTCAAATTATCAAAAATCATCAGAGCAATGAGCAAAG-AGTGTA 1313032 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTC-CGAAGTCGGGGTTTTTAGCATGTATTAG 354 ||| || ||| | |||||| || | ||| ||||| ||| | | | ||||||||| Sbjct 1313031 TTGACCTTCTAT-TTATAAATGCATCTTTTCTAAAAGTCAAGGTATGTTGGATGTATTAG 1312973 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 ||||| |||||| | |||||||| ||| || ||| |||||| |||| |||||| ||| Sbjct 1312972 CTCTATAATTACTATGGTTATCCGAGTA-CCAGATACCATCAAACAAACTATAACTAATT 1312914 Query 415 TAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTA 473 |||| ||||||| ||| || ||| || || |||| || || |||| | |||||| | ||| Sbjct 1312913 TAATAAGCCATTTGCAATTCCACAGTCTAAATTGGTTCATGCTTACAAATGCATAGTTTA 1312854 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||| |||||||||||| || || Sbjct 1312853 ATCTTTGAGACACGCATATGACTACAGGTAG 1312823 >seq9 Length=8984705 Score = 120 bits (132), Expect = 9e-25 Identities = 118/146 (81%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 337 GTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCA 396 |||| | ||||||||||||||||||||||| |||||||| |||| || ||| |||| Sbjct 7850699 GTTTGTTGCATGTATTAGCTCTAGAATTACTTCGGTTATCTGAGTAG-CAGATACAATCA 7850641 Query 397 AATAAACGA-TAACTGATTTAATGAGCCATTCGCAG--TTTCACTGTAT-AGATTGCTTA 452 || |||| | |||| |||||| ||||||||| |||| ||||| ||| | | | | | | Sbjct 7850640 AACAAACTATTAACAGATTTAGTGAGCCATTTGCAGTTTTTCAATGTCTGAACTAGTTCA 7850581 Query 453 TACTTAGACATGCATGGCTTAATCTT 478 ||||| |||||||||||||||||||| Sbjct 7850580 TACTT-GACATGCATGGCTTAATCTT 7850556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510308258304