Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01]
7,452 sequences; 1,373,365,927 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq842 134 8e-30
seq354 134 8e-30
seq94 134 8e-30
seq59 134 8e-30
seq49 134 8e-30
seq957 132 3e-29
seq114 116 2e-24
seq515 73.4 2e-11
>seq842
Length=479921
Score = 134 bits (148), Expect = 8e-30
Identities = 100/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 364218 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 364277
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 364278 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 364334
Score = 116 bits (128), Expect = 2e-24
Identities = 96/117 (82%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| ||||||||||| ||||| || |||||| |
Sbjct 414792 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGACGGAGTCCTAAAAGCAACATCCGTC 414851
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| || ||||| ||||| ||| | |||| |||||| |||||||||||||||
Sbjct 414852 GATCCCTGGTTGGCATCGTTTATTGTTGAAACTAGGACGGTGTCTGATCGTCTTCGA 414908
>seq354
Length=1203325
Score = 134 bits (148), Expect = 8e-30
Identities = 100/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 421724 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 421783
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 421784 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 421840
>seq94
Length=2365428
Score = 134 bits (148), Expect = 8e-30
Identities = 100/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 1591102 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 1591161
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 1591162 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 1591218
Score = 134 bits (148), Expect = 8e-30
Identities = 100/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 1604415 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 1604474
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 1604475 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 1604531
>seq59
Length=2824927
Score = 134 bits (148), Expect = 8e-30
Identities = 100/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 689655 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 689596
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 689595 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 689539
Score = 134 bits (148), Expect = 8e-30
Identities = 100/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 777871 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 777812
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 777811 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 777755
>seq49
Length=2931737
Score = 134 bits (148), Expect = 8e-30
Identities = 100/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 2688778 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 2688837
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 2688838 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 2688894
>seq957
Length=373148
Score = 132 bits (146), Expect = 3e-29
Identities = 99/116 (85%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 219804 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 219863
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCG 116
||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||
Sbjct 219864 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCG 219919
Score = 125 bits (138), Expect = 4e-27
Identities = 100/118 (85%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59
||||||||||||||||||||||| ||||||||| ||| ||||| || || ||| |
Sbjct 208185 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCAGAGTCCTAAAAGCAATATCCGC 208243
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||| |||||||| ||||| |||| |||||| ||||||||||||| ||||||||
Sbjct 208244 CGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATTGTCTTCGA 208301
>seq114
Length=2223408
Score = 116 bits (128), Expect = 2e-24
Identities = 96/117 (82%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 1172703 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 1172762
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||| ||| ||||| |||| |||||| |||||||||| || ||||| ||
Sbjct 1172763 GATCCCTGGTCGACATCGTTTATGGTTGAGACTAGGACGGTATCTAATTGTCTTTGA 1172819
>seq515
Length=902303
Score = 73.4 bits (80), Expect = 2e-11
Identities = 87/117 (74%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||| ||||||||||||||| || ||||| || ||||| || ||||| |
Sbjct 35173 GAATCCAAAGACTTTGATT-CTTAAAAGGTCTCGGCGGAGTCCTAAAAGCAACATTTGCT 35231
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| || |||||| | ||||| |||| ||| || || || ||||||||||||||||
Sbjct 35232 GATCTCTTGTCGGCCTCGTTTATGGTTGAGATTAGGATGGAATCTGATCGTCTTCGA 35288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278380550280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |