Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq400 230 6e-58 seq93 230 6e-58 seq1 190 5e-46 seq345 120 8e-25 seq65 102 2e-19 >seq400 Length=1097662 Score = 230 bits (254), Expect = 6e-58 Identities = 297/409 (73%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 136084 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 136025 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 136024 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 135965 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||||| || |||| | || Sbjct 135964 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTGCCAAGCTGGAGTACGGTAGG 135905 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 135904 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 135845 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| ||||||| || | Sbjct 135844 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 135785 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||| | | || | | | Sbjct 135784 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTGGGCGCTGTGCGTATCGA 135725 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 135724 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 135676 Score = 188 bits (208), Expect = 2e-45 Identities = 244/334 (73%), Gaps = 10/334 (3%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 193944 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 193885 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || ||||||| ||||||||||||| | || ||||||| | | || || ||| Sbjct 193884 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 193828 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || |||| | | ||| | | || ||| ||||| | ||| | Sbjct 193827 AAGTCGC---CAAAAACTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGGGACAGGG 193771 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | |||||| ||||||| | |||| | | |||||| |||| || Sbjct 193770 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCAGAGATCTACGAAGGAACGCCAAAAGC 193711 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| |||||||| ||| || Sbjct 193710 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACGGG 193651 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 193650 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 193617 >seq93 Length=2366463 Score = 230 bits (254), Expect = 6e-58 Identities = 297/409 (73%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 2082385 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 2082326 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 2082325 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 2082266 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||||| || |||| | || Sbjct 2082265 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTGCCAAGCTGGAGTACGGTAGG 2082206 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 2082205 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 2082146 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| ||||||| || | Sbjct 2082145 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 2082086 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||| | | || | | | Sbjct 2082085 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTGGGCGCTGTGCGTATCGA 2082026 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 2082025 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 2081977 Score = 114 bits (126), Expect = 3e-23 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| |||||||||||||| || | | ||||||||| | |||| || Sbjct 2080403 GGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGACGAAAGC 2080344 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||||| |||||||| || | |||||||| ||||||| || |||||||| Sbjct 2080343 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGA 2080284 Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG- 368 ||||| ||||||| ||| |||||||| ||| | | || | | | || || Sbjct 2080283 TACCCCAGTAGTCCTAGCCGTAAACGATGGATACTGGGCGCTGTGCGTATCGACCCGTGC 2080224 Query 369 -GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || ||||||||||||| |||| ||||| ||||| ||| Sbjct 2080223 AGTGCTGTAGCTAACGCGTTAAGTATCCCGCCCGGGGAGTAC 2080182 >seq1 Length=6409783 Score = 190 bits (210), Expect = 5e-46 Identities = 243/335 (73%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| | ||||||| |||||||||||||| ||||||| ||| ||| Sbjct 690235 TATCTGGGGAATAAGCATCAGCTAACTCTGTGCCAGCAGCCGCAGTAATACAGAGGATGC 690294 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| ||||| | |||| ||||||||| | ||| || | | |||| | | || Sbjct 690295 AAGCGTTATCTGGAATGATTGGGTGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 690354 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||| ||||| |||| ||| || | | ||||| |||||| | || Sbjct 690355 CAAATCCTAGGGCTCAACCCTGGACAGGCGGTGGAAACTGCCAAGTTAGAGTACGGTAGG 690414 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | |||||||||||| Sbjct 690415 GGCAGAGGGAATTTCCTGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAATGG 690474 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 | || ||| | ||||| |||||| || || | |||||||| |||||| || | Sbjct 690475 CAAAAGCACTCTGCTGGGCCAACACTAACACTGAGAGACGAAAGCTAAGGGAGCGAATGG 690534 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||| ||||||| ||| |||| ||| Sbjct 690535 GATTAGATACCCCAGTAGTCCTAGCCGTAAATGAT 690569 Score = 118 bits (130), Expect = 3e-24 Identities = 160/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| | |||||||||||| || | | ||||||||| |||||| || Sbjct 691607 GGAATTTCCGGTGGAGCGGCGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGC 691666 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||||| |||||||| || | |||||||| ||||||| || |||||||| Sbjct 691667 ACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGA 691726 Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG- 368 ||||| ||||||| ||| |||||||| ||| | | || | | | || || Sbjct 691727 TACCCCAGTAGTCCTAGCCGTAAACGATGGATACTGGGCGCTGTGCGTATCAACCCGTGC 691786 Query 369 -GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || ||||||||||||| |||| ||||||||||| ||| Sbjct 691787 AGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 691828 >seq345 Length=1218342 Score = 120 bits (132), Expect = 8e-25 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||||| |||||||||||| ||||||||| ||| ||||||||||| Sbjct 621173 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCACGGTAATACAGAGGATGCAAGCGTTA 621114 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||||| | |||| ||||||||| | ||| || | | |||| | | | ||||||| Sbjct 621113 TCCGGAATGATTGGGAGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCATCAAATCCC 621054 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 ||||| |||| ||| || | | ||||| || |||| | || || | Sbjct 621053 AGGGCTCAACCCTGGACAGGCGGTGGAAACTGCCAAGCTGGAGTACGGTAGGGGCAAAGG 620994 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATAT 224 ||||| | ||| || ||||||||||||| ||| Sbjct 620993 GAATTTCCGGTGGAGTGGTGAAATGCGTAGGTAT 620960 >seq65 Length=2714061 Score = 102 bits (112), Expect = 2e-19 Identities = 221/328 (67%), Gaps = 2/328 (1%) Strand=Plus/Plus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| | | ||||| ||||||||||||| |||||||| ||| |||||| |||| Sbjct 626199 GAATAAGCATCAGTTAACTCCGTGCCAGCAGCCACGGTAATATAAAGGATGCAAGTGTTA 626258 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||| | ||||| |||||| | | ||| || | | |||| | ||| |||||| Sbjct 626259 TCTAGAATGATTGGGCTTAAAGCATATGTAGGTGGCTTTTTAAGTCCACTGTCAAATCCT 626318 Query 131 CGGGCTTAA-CCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGT 189 |||| || || || || | | ||||| || |||| || | || Sbjct 626319 AAGGCTCAACCCCTAGACAGGCGGTGGAAACTGCCAAGCTGGAGTATGGTAAGGGCATAA 626378 Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| ||| ||| ||||||||||||| || | ||||||||| | |||| | Sbjct 626379 GGAATTTTTGGTGGAGCGATGAAATGCGTAGAGATCAAAAAGAACACCAACGACGAAAGT 626438 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||||| |||| |||| | | | || ||| |||| | || |||||||| Sbjct 626439 ACTCTACTGGGCCAACATTGACATTGAGAGATGAGAGC-AGGGGTGTGAATGGGATTAGA 626497 Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337 |||| ||||||| ||| |||| ||| Sbjct 626498 TACCTCAGTAGTCCTAGCCATAAATGAT 626525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289503899008