Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01]
7,452 sequences; 1,373,365,927 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq432 264 3e-68
seq400 248 2e-63
seq7 242 9e-62
seq93 230 6e-58
seq239 159 9e-37
seq459 91.5 4e-16
seq665 89.7 1e-15
seq1529 87.8 5e-15
seq2895 80.6 7e-13
>seq432
Length=1036175
Score = 264 bits (292), Expect = 3e-68
Identities = 307/418 (73%), Gaps = 27/418 (6%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| ||| ||| ||||||| ||| ||||||
Sbjct 790318 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 790377
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790378 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 790437
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188
| ||||||||||||||| |||||||||||| || ||| | | | || | |||
Sbjct 790438 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 790497
Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248
| || |||||||||||| |||||||||||| ||| ||| | ||| || |||
Sbjct 790498 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATGGTCTTACGACTTT 790557
Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308
|| ||| |||||||||| ||||||||||| |||||||| || |||||
Sbjct 790558 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 790611
Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368
||| ||| | ||| | ||||||||||||||||||| || ||
Sbjct 790612 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 790654
Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426
||||| |||||||| ||||| |||| || ||| ||||||||||||| | ||||
Sbjct 790655 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 790712
>seq400
Length=1097662
Score = 248 bits (274), Expect = 2e-63
Identities = 302/412 (73%), Gaps = 21/412 (5%)
Strand=Plus/Minus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
||| | |||||||||| | || ||||||||||| | ||| | |||||||||| ||
Sbjct 216464 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 216405
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 216404 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 216345
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186
| |||| ||||| ||||||||||||||||||||| || | ||||| || | ||
Sbjct 216344 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--AC 216291
Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246
| | ||||||| |||||||||||| |||| || |||||| || || | |
Sbjct 216290 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 216231
Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306
| ||||||| ||||||||||||||||||||||| | |||||||| | | | | |
Sbjct 216230 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 216171
Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366
| | | || || |||| ||||||||||||||||||| | |
Sbjct 216170 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 216126
Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418
||||||| ||||||||| | ||||||||||||||| | |||| ||||||
Sbjct 216125 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 216074
Score = 242 bits (268), Expect = 9e-62
Identities = 297/406 (73%), Gaps = 21/406 (5%)
Strand=Plus/Minus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||| | || ||||||||| | | ||| | |||||||||| || |||||
Sbjct 266595 GCATCTTCACGGAGAATTCAATTTCTCCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTT 266536
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
|| |||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||
Sbjct 266535 ACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTA 266476
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192
||||| ||||||||||||||||||||| || | ||||| || | || | |
Sbjct 266475 GAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--ACTTCTCC 266422
Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252
||||||| |||||||||||| |||| || |||||| || || | || ||||
Sbjct 266421 TTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAG 266362
Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312
||| ||||||||||||||||||||||| | |||||||| | | | | | | | |
Sbjct 266361 AGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAA 266302
Query 313 CGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGC 372
|| || |||| ||||||||||||||||||| | | ||||||
Sbjct 266301 ---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCATTTTGC 266257
Query 373 CTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418
| ||||||||| | ||||||||||||||| | |||| ||||||
Sbjct 266256 CGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 266211
Score = 176 bits (194), Expect = 1e-41
Identities = 284/411 (69%), Gaps = 27/411 (7%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || |||||| ||| ||| || | || || ||||||
Sbjct 129443 GCATCTTCACAGAAATGTCTATTTCATCGAGCCTCTCTCTGAAATAGTACCCAGATCGTT 129502
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||||| || |||| ||||| ||||||||||| |||||||||||||||||||||||| |||
Sbjct 129503 ACGCCTTTTGTGCGGGTCGAAACTTACCCGATAAGGAATTTCGCTACCTTAGGACCATTA 129562
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188
| |||| || ||||||| || |||| |||| || ||| | | |||| | |||
Sbjct 129563 TAGTTATGGTCGCCGTTCACTGGGGTTTCGGTCGTCGGCTCCCCTGTCATTAGGTCACCA 129622
Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248
| || |||||| |||| |||||||||||| ||| | | | ||| || |||
Sbjct 129623 ACTTCCTTGACCTTCTAGCACTGGGCAGGCGTCAGCCCCCAGATATAGTCTTACGACTTT 129682
Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308
|| || |||||||||| ||||||||||| |||| || || ||||| | | |
Sbjct 129683 GCGAAGACCTGTGTTTTTGGTAAACAGTCGCCCGAGCCTAGTCACTGCGACCCCCTTTA- 129741
Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368
| |||| |||| ||||||||||||||||||| || ||
Sbjct 129742 --TGAGGAG--------ACACC------------CCTTCTCCCGAAGTTACGGGGCTATT 129779
Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419
||||| |||||||| ||||| |||| || | | ||||||||||||
Sbjct 129780 TTGCCGAGTTCCTTAAAGAGAGTTATCTCGTGCCCTTATGTATTCTCTACC 129830
>seq7
Length=4387591
Score = 242 bits (268), Expect = 9e-62
Identities = 278/378 (74%), Gaps = 27/378 (7%)
Strand=Plus/Plus
Query 53 GAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 112
||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1516092 GAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 1516151
Query 113 TCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT 172
||||||||||||||||||||| ||||||||||||||| |||||||||||| || |||
Sbjct 1516152 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCT 1516211
Query 173 ----TCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCT 228
| | | || | ||| | || |||||||||||| |||||||||||| |||
Sbjct 1516212 CCCCTGTCATCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCC 1516271
Query 229 ATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTG 288
||| | ||| || ||||| ||| |||||||||| ||||||||||| ||||||
Sbjct 1516272 ATATATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTG 1516331
Query 289 GTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCT 348
|| || ||||| ||| ||| | ||| | ||||||
Sbjct 1516332 GTCACTGCGACC------CCCTTTGTGAGGA-----------------GGCACCCCTTCT 1516368
Query 349 CCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGG 408
||||||||||||| || ||||||| |||||||| ||||| |||| || ||| ||
Sbjct 1516369 CCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGG 1516428
Query 409 TATTCTCTACCCAACCAC 426
||||||||||| | ||||
Sbjct 1516429 TATTCTCTACCTACCCAC 1516446
>seq93
Length=2366463
Score = 230 bits (254), Expect = 6e-58
Identities = 297/414 (72%), Gaps = 27/414 (7%)
Strand=Plus/Plus
Query 17 CTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGC 76
|||||||| || | ||||||| ||| ||| | |||||| ||| ||||||| ||
Sbjct 2070976 CTTCACAGACATATTTATTTCACCGAGCCTCTCTTCGAGACAATGCCCAGATCGTTATGC 2071035
Query 77 CATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGT 136
| |||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| ||
Sbjct 2071036 CTTTCGTGTGGGTCGGAACTTACCCGATAAGGAATTTTGCTACCTTAGGACCGTTATAGT 2071095
Query 137 TACGGCCGCCGTTTACCGGGGCTTCGATCAAGAG----CTTCGCGTTAGCTAACCCCATC 192
||||||||||||| |||||||||||| || | ||| | | || | ||| |
Sbjct 2071096 TACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCTTGTCATCAGGTCACCAACTT 2071155
Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252
|| |||||||||||| |||||||||||| ||| ||| | ||| || ||||| |
Sbjct 2071156 CGTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATGGTCTTACGACTTTGCGG 2071215
Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312
|| |||||||||| ||||||||||| |||||||| || ||||| |||
Sbjct 2071216 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CCCTTT 2071269
Query 313 CGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGC 372
||| | ||| | ||||||||||||||||||| || ||||||
Sbjct 2071270 GTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGC 2071312
Query 373 CTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426
| |||||||| ||||| |||| || ||| || |||||||||| | ||||
Sbjct 2071313 CGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGCATTCTCTACCTACCCAC 2071366
>seq239
Length=1496907
Score = 159 bits (176), Expect = 9e-37
Identities = 127/153 (83%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| | | ||| |||||| ||| ||||||
Sbjct 1065746 GCATCTTCACAGACATGTCTATTTCACCGTGCCTCTCTCCGAGACAATGCCCAGATCGTT 1065687
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
| ||| |||||| ||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1065686 ATGCCTTTCGTGTGGGTCGGAACTTACCCGATAAGGAATTTTGCTACCTTAGGACCGTTA 1065627
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165
| ||||||||||||||| |||||||||||| ||
Sbjct 1065626 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTC 1065594
>seq459
Length=1003533
Score = 91.5 bits (100), Expect = 4e-16
Identities = 138/194 (71%), Gaps = 7/194 (4%)
Strand=Plus/Plus
Query 54 AGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTT 113
|||||| ||| |||| ||| || || |||| ||| |||| ||||| ||||||||||||
Sbjct 141846 AGACAGTGCCCAAATCGCTACACCTTTTGTGCTGGTTGGAATTTACCTGACAAGGAATTT 141905
Query 114 CGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTT 173
|||| |||| || ||||| ||| | |||| || |||| ||||| | || | ||
Sbjct 141906 TCCTACTTTAGAACTGTTATAATTATAGTCGCCATTCACCGAGGCTTTGGTC-GCTGGTT 141964
Query 174 CGCGTTAGC-TAACCCCATCAA-----TTAACCTTCCGGCACCGGGCAGGCGTCACACCC 227
| | || | | | || ||| |||||||||| ||| |||||| | ||| |||
Sbjct 141965 CCCCTTGTCATCAAGTCACCAACTTCCTTAACCTTCCAGCAGTGGGCAGTCATCAGCCCC 142024
Query 228 TATACGTCCACTTT 241
||||||| |||||
Sbjct 142025 TATACGTTAACTTT 142038
>seq665
Length=678873
Score = 89.7 bits (98), Expect = 1e-15
Identities = 124/174 (71%), Gaps = 5/174 (3%)
Strand=Plus/Plus
Query 54 AGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTT 113
||| || ||| || |||||| | || |||| ||| |||| ||||| ||||||||||||
Sbjct 390111 AGATAGTGCCCAAATAGTTACGTCTTTTGTGCTGGTGGGAATTTACCTGACAAGGAATTT 390170
Query 114 CGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTT 173
| |||| |||| || | ||| |||||| |||| || |||| ||||| | || ||||
Sbjct 390171 CACTACTTTAGAACTGCTATAATTACGGTCGCCATTCACCGAGGCTTTGGCCACTGGCTT 390230
Query 174 C-----GCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCA 222
| | | || | ||| | |||||||||||||| |||||| | |||
Sbjct 390231 CCCTTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCAGTGGGCAGTCATCA 390284
>seq1529
Length=99461
Score = 87.8 bits (96), Expect = 5e-15
Identities = 74/91 (81%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 70 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 129
|||||||| || || | ||| |||| ||||| |||||||||||||||||| |||| ||||
Sbjct 22361 GTTACGCCTTTTGTACTGGTTGGAATTTACCTGACAAGGAATTTCGCTACTTTAGAACCG 22420
Query 130 TTATTGTTACGGCCGCCGTTTACCGGGGCTT 160
||| |||| | |||| || |||| |||||
Sbjct 22421 CTATAATTACAGTCGCCATTCACCGAGGCTT 22451
>seq2895
Length=20765
Score = 80.6 bits (88), Expect = 7e-13
Identities = 77/99 (78%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
|||||| || | || ||||| ||| ||||| ||| ||||| ||||| |||||| |||
Sbjct 12648 ATCGTTGCGTCTTTTGTGCAACTCGAAACTTTCCCCACAAGAAATTTTATTACCTTGGGA 12707
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165
||||||| |||| || ||| | ||| |||||||||||
Sbjct 12708 CCGTTATAGTTATGGTTGCCTTGCACCAGGGCTTCGATC 12746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260706045184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |