Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq432 264 3e-68 seq400 248 2e-63 seq7 242 9e-62 seq93 230 6e-58 seq239 159 9e-37 seq459 91.5 4e-16 seq665 89.7 1e-15 seq1529 87.8 5e-15 seq2895 80.6 7e-13 >seq432 Length=1036175 Score = 264 bits (292), Expect = 3e-68 Identities = 307/418 (73%), Gaps = 27/418 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 790318 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 790377 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 790378 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 790437 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 790438 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 790497 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| ||| | ||| || ||| Sbjct 790498 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATGGTCTTACGACTTT 790557 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 790558 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 790611 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 790612 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 790654 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 790655 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 790712 >seq400 Length=1097662 Score = 248 bits (274), Expect = 2e-63 Identities = 302/412 (73%), Gaps = 21/412 (5%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 216464 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 216405 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 216404 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 216345 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||||| || | || Sbjct 216344 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--AC 216291 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||||||||||| |||| || |||||| || || | | Sbjct 216290 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 216231 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 216230 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 216171 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 216170 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 216126 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 216125 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 216074 Score = 242 bits (268), Expect = 9e-62 Identities = 297/406 (73%), Gaps = 21/406 (5%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || ||||||||| | | ||| | |||||||||| || ||||| Sbjct 266595 GCATCTTCACGGAGAATTCAATTTCTCCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTT 266536 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || |||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| Sbjct 266535 ACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTA 266476 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 ||||| ||||||||||||||||||||| || | ||||| || | || | | Sbjct 266475 GAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--ACTTCTCC 266422 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 ||||||| |||||||||||| |||| || |||||| || || | || |||| Sbjct 266421 TTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAG 266362 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312 ||| ||||||||||||||||||||||| | |||||||| | | | | | | | | Sbjct 266361 AGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAA 266302 Query 313 CGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGC 372 || || |||| ||||||||||||||||||| | | |||||| Sbjct 266301 ---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCATTTTGC 266257 Query 373 CTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 | ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 266256 CGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 266211 Score = 176 bits (194), Expect = 1e-41 Identities = 284/411 (69%), Gaps = 27/411 (7%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || |||||| ||| ||| || | || || |||||| Sbjct 129443 GCATCTTCACAGAAATGTCTATTTCATCGAGCCTCTCTCTGAAATAGTACCCAGATCGTT 129502 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| || |||| ||||| ||||||||||| |||||||||||||||||||||||| ||| Sbjct 129503 ACGCCTTTTGTGCGGGTCGAAACTTACCCGATAAGGAATTTCGCTACCTTAGGACCATTA 129562 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | |||| || ||||||| || |||| |||| || ||| | | |||| | ||| Sbjct 129563 TAGTTATGGTCGCCGTTCACTGGGGTTTCGGTCGTCGGCTCCCCTGTCATTAGGTCACCA 129622 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||| |||| |||||||||||| ||| | | | ||| || ||| Sbjct 129623 ACTTCCTTGACCTTCTAGCACTGGGCAGGCGTCAGCCCCCAGATATAGTCTTACGACTTT 129682 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || || |||||||||| ||||||||||| |||| || || ||||| | | | Sbjct 129683 GCGAAGACCTGTGTTTTTGGTAAACAGTCGCCCGAGCCTAGTCACTGCGACCCCCTTTA- 129741 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 | |||| |||| ||||||||||||||||||| || || Sbjct 129742 --TGAGGAG--------ACACC------------CCTTCTCCCGAAGTTACGGGGCTATT 129779 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||||| |||||||| ||||| |||| || | | |||||||||||| Sbjct 129780 TTGCCGAGTTCCTTAAAGAGAGTTATCTCGTGCCCTTATGTATTCTCTACC 129830 >seq7 Length=4387591 Score = 242 bits (268), Expect = 9e-62 Identities = 278/378 (74%), Gaps = 27/378 (7%) Strand=Plus/Plus Query 53 GAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 112 ||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 1516092 GAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 1516151 Query 113 TCGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT 172 ||||||||||||||||||||| ||||||||||||||| |||||||||||| || ||| Sbjct 1516152 TCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCT 1516211 Query 173 ----TCGCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCT 228 | | | || | ||| | || |||||||||||| |||||||||||| ||| Sbjct 1516212 CCCCTGTCATCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCC 1516271 Query 229 ATACGTCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTG 288 ||| | ||| || ||||| ||| |||||||||| ||||||||||| |||||| Sbjct 1516272 ATATATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTG 1516331 Query 289 GTATCTTCGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCT 348 || || ||||| ||| ||| | ||| | |||||| Sbjct 1516332 GTCACTGCGACC------CCCTTTGTGAGGA-----------------GGCACCCCTTCT 1516368 Query 349 CCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGG 408 ||||||||||||| || ||||||| |||||||| ||||| |||| || ||| || Sbjct 1516369 CCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGG 1516428 Query 409 TATTCTCTACCCAACCAC 426 ||||||||||| | |||| Sbjct 1516429 TATTCTCTACCTACCCAC 1516446 >seq93 Length=2366463 Score = 230 bits (254), Expect = 6e-58 Identities = 297/414 (72%), Gaps = 27/414 (7%) Strand=Plus/Plus Query 17 CTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGC 76 |||||||| || | ||||||| ||| ||| | |||||| ||| ||||||| || Sbjct 2070976 CTTCACAGACATATTTATTTCACCGAGCCTCTCTTCGAGACAATGCCCAGATCGTTATGC 2071035 Query 77 CATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGT 136 | |||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| || Sbjct 2071036 CTTTCGTGTGGGTCGGAACTTACCCGATAAGGAATTTTGCTACCTTAGGACCGTTATAGT 2071095 Query 137 TACGGCCGCCGTTTACCGGGGCTTCGATCAAGAG----CTTCGCGTTAGCTAACCCCATC 192 ||||||||||||| |||||||||||| || | ||| | | || | ||| | Sbjct 2071096 TACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCTTGTCATCAGGTCACCAACTT 2071155 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 || |||||||||||| |||||||||||| ||| ||| | ||| || ||||| | Sbjct 2071156 CGTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATGGTCTTACGACTTTGCGG 2071215 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312 || |||||||||| ||||||||||| |||||||| || ||||| ||| Sbjct 2071216 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CCCTTT 2071269 Query 313 CGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGC 372 ||| | ||| | ||||||||||||||||||| || |||||| Sbjct 2071270 GTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGC 2071312 Query 373 CTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | |||||||| ||||| |||| || ||| || |||||||||| | |||| Sbjct 2071313 CGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGCATTCTCTACCTACCCAC 2071366 >seq239 Length=1496907 Score = 159 bits (176), Expect = 9e-37 Identities = 127/153 (83%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| | | ||| |||||| ||| |||||| Sbjct 1065746 GCATCTTCACAGACATGTCTATTTCACCGTGCCTCTCTCCGAGACAATGCCCAGATCGTT 1065687 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 | ||| |||||| ||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 1065686 ATGCCTTTCGTGTGGGTCGGAACTTACCCGATAAGGAATTTTGCTACCTTAGGACCGTTA 1065627 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 | ||||||||||||||| |||||||||||| || Sbjct 1065626 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTC 1065594 >seq459 Length=1003533 Score = 91.5 bits (100), Expect = 4e-16 Identities = 138/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Plus Query 54 AGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTT 113 |||||| ||| |||| ||| || || |||| ||| |||| ||||| |||||||||||| Sbjct 141846 AGACAGTGCCCAAATCGCTACACCTTTTGTGCTGGTTGGAATTTACCTGACAAGGAATTT 141905 Query 114 CGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTT 173 |||| |||| || ||||| ||| | |||| || |||| ||||| | || | || Sbjct 141906 TCCTACTTTAGAACTGTTATAATTATAGTCGCCATTCACCGAGGCTTTGGTC-GCTGGTT 141964 Query 174 CGCGTTAGC-TAACCCCATCAA-----TTAACCTTCCGGCACCGGGCAGGCGTCACACCC 227 | | || | | | || ||| |||||||||| ||| |||||| | ||| ||| Sbjct 141965 CCCCTTGTCATCAAGTCACCAACTTCCTTAACCTTCCAGCAGTGGGCAGTCATCAGCCCC 142024 Query 228 TATACGTCCACTTT 241 ||||||| ||||| Sbjct 142025 TATACGTTAACTTT 142038 >seq665 Length=678873 Score = 89.7 bits (98), Expect = 1e-15 Identities = 124/174 (71%), Gaps = 5/174 (3%) Strand=Plus/Plus Query 54 AGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTT 113 ||| || ||| || |||||| | || |||| ||| |||| ||||| |||||||||||| Sbjct 390111 AGATAGTGCCCAAATAGTTACGTCTTTTGTGCTGGTGGGAATTTACCTGACAAGGAATTT 390170 Query 114 CGCTACCTTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTT 173 | |||| |||| || | ||| |||||| |||| || |||| ||||| | || |||| Sbjct 390171 CACTACTTTAGAACTGCTATAATTACGGTCGCCATTCACCGAGGCTTTGGCCACTGGCTT 390230 Query 174 C-----GCGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCA 222 | | | || | ||| | |||||||||||||| |||||| | ||| Sbjct 390231 CCCTTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCAGTGGGCAGTCATCA 390284 >seq1529 Length=99461 Score = 87.8 bits (96), Expect = 5e-15 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 70 GTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 129 |||||||| || || | ||| |||| ||||| |||||||||||||||||| |||| |||| Sbjct 22361 GTTACGCCTTTTGTACTGGTTGGAATTTACCTGACAAGGAATTTCGCTACTTTAGAACCG 22420 Query 130 TTATTGTTACGGCCGCCGTTTACCGGGGCTT 160 ||| |||| | |||| || |||| ||||| Sbjct 22421 CTATAATTACAGTCGCCATTCACCGAGGCTT 22451 >seq2895 Length=20765 Score = 80.6 bits (88), Expect = 7e-13 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||| || | || ||||| ||| ||||| ||| ||||| ||||| |||||| ||| Sbjct 12648 ATCGTTGCGTCTTTTGTGCAACTCGAAACTTTCCCCACAAGAAATTTTATTACCTTGGGA 12707 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 ||||||| |||| || ||| | ||| ||||||||||| Sbjct 12708 CCGTTATAGTTATGGTTGCCTTGCACCAGGGCTTCGATC 12746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260706045184