Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq432 333 6e-89 seq7 318 1e-84 seq93 307 2e-81 seq400 284 3e-74 seq239 172 1e-40 seq1529 149 1e-33 seq665 134 3e-29 seq459 120 6e-25 >seq432 Length=1036175 Score = 333 bits (368), Expect = 6e-89 Identities = 288/353 (82%), Gaps = 8/353 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||||||||| |||||| Sbjct 790318 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 790377 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 790378 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 790437 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||| | | | || | || Sbjct 790438 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 790497 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| ||||||| |||| |||||||||||||| || ||| || ||||| |||||| Sbjct 790498 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATGGTCTTACGACTTT 790557 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCA 299 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | Sbjct 790558 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGT 790617 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 790618 GAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 790669 >seq7 Length=4387591 Score = 318 bits (352), Expect = 1e-84 Identities = 262/315 (83%), Gaps = 8/315 (3%) Strand=Plus/Plus Query 45 TTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAA 104 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1516090 TTGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAA 1516149 Query 105 TTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTG 164 ||||||||||||||||||||||||||||||||||||||| || ||||||| || | | Sbjct 1516150 TTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGG 1516209 Query 165 CTTCGAT-TGCTC---TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTC 220 || | | | || | || | |||| ||||||| |||| |||||||||||||| | Sbjct 1516210 CTCCCCTGTCATCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCC 1516269 Query 221 CTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCC 280 | ||| || ||||| |||||| || || ||||||||||||||||||||||||| ||||| Sbjct 1516270 CCATATATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCC 1516329 Query 281 TATTCTCTGCG---GCCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATT 337 | || ||||| ||| | || |||||||||||||||| ||||||||||| ||| Sbjct 1516330 TGGTCACTGCGACCCCCTTTGTGAG-GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATT 1516388 Query 338 TTGCCGAGTTCCTTA 352 ||||||||||||||| Sbjct 1516389 TTGCCGAGTTCCTTA 1516403 >seq93 Length=2366463 Score = 307 bits (340), Expect = 2e-81 Identities = 273/336 (81%), Gaps = 14/336 (4%) Strand=Plus/Plus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 ||||||||||| || | | |||||| |||||| ||||||| |||||||||| ||||||| Sbjct 2070992 ATTTCACCGAGCCTCTCTTCGAGACAATGCCCAGATCGTTATGCCTTTCGTGTGGGTCGG 2071051 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 146 ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 2071052 AACTTACCCGATAAGGAATTTTGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 2071111 Query 147 TGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCCCC-------TTAACCTTCCA 199 ||||||| | || | | || ||| || | ||| || || || ||||||| Sbjct 2071112 CGGGGCTT-CGGTCGCCGGCTCCCTTG-TC-ATCAGGTCACCAACTTCGTTGACCTTCCG 2071168 Query 200 GCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTT 259 |||| |||||||||||||| || ||| || ||||| |||||| || || ||||||||||| Sbjct 2071169 GCACTGGGCAGGCGTCAGCCCCCATATATGGTCTTACGACTTTGCGGAGACCTGTGTTTT 2071228 Query 260 TGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCATAGACAGGCACCCCTTC 316 |||||||||||||| |||||| || ||||| ||| | || |||||||||||| Sbjct 2071229 TGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGTGAG-GAGGCACCCCTTC 2071287 Query 317 TCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||| ||||||||||| |||||||||||||||||| Sbjct 2071288 TCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 2071323 >seq400 Length=1097662 Score = 284 bits (314), Expect = 3e-74 Identities = 282/364 (77%), Gaps = 6/364 (2%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||| |||| || | ||| | ||| |||| |||||| Sbjct 129443 GCATCTTCACAGAAATGTCTATTTCATCGAGCCTCTCTCTGAAATAGTACCCAGATCGTT 129502 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||| |||||||||| ||||||||||| |||||||||||||||||||||||| ||| Sbjct 129503 ACGCCTTTTGTGCGGGTCGAAACTTACCCGATAAGGAATTTCGCTACCTTAGGACCATTA 129562 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTA----ACAG 182 |||||| || ||||||| ||||||| || || | ||| | | | || || Sbjct 129563 TAGTTATGGTCGCCGTTCACTGGGGTTTCGGTCGTCGGCTCCCCTGTCATTAGGTCACCA 129622 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||| |||||| ||||| |||||||||||||| || | | || ||||| |||||| Sbjct 129623 ACTTCCTTGACCTTCTAGCACTGGGCAGGCGTCAGCCCCCAGATATAGTCTTACGACTTT 129682 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG--GCCTGTCAT 300 || | ||||||||||||||||||||||||| | ||||| || ||||| || | || Sbjct 129683 GCGAAGACCTGTGTTTTTGGTAAACAGTCGCCCGAGCCTAGTCACTGCGACCCCCTTTAT 129742 Query 301 AGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGT 360 || ||||||||||||| ||||||||||| ||||||||||||||||||| | ||| Sbjct 129743 GAGGAGACACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAAAGAGAGT 129802 Query 361 TCTC 364 | || Sbjct 129803 TATC 129806 Score = 273 bits (302), Expect = 5e-71 Identities = 286/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 216464 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 216405 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 216404 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 216345 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | |||| Sbjct 216344 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAAC 216293 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 216292 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 216233 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 216232 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 216173 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 216172 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 216113 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 216112 CTTCGACATGGTTCTC 216097 Score = 266 bits (294), Expect = 7e-69 Identities = 281/370 (76%), Gaps = 20/370 (5%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||| ||| ||| || ||||||| | | ||||| Sbjct 266595 GCATCTTCACGGAGAATTCAATTTCTCCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTT 266536 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||||||| ||||| ||||| ||||||||||||||||||||||||||| |||| Sbjct 266535 ACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTA 266476 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 |||||| |||||||||||| ||||||| |||| ||| | ||||| || Sbjct 266475 GAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAACACTTCT 266424 Query 187 CCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 |||| |||||||||||||||||||| ||||| ||||||||||| || | ||||||| Sbjct 266423 CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGC 266364 Query 245 AGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC------ 298 ||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 266363 AGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCA 266304 Query 299 ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAAC 354 | ||| || |||||||||||||| |||||||||||||||||||||||||||||| Sbjct 266303 AAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGA 266244 Query 355 AATAGTTCTC 364 || |||||| Sbjct 266243 CATGGTTCTC 266234 >seq239 Length=1496907 Score = 172 bits (190), Expect = 1e-40 Identities = 127/148 (86%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||| | || | |||||| |||||| |||||| Sbjct 1065746 GCATCTTCACAGACATGTCTATTTCACCGTGCCTCTCTCCGAGACAATGCCCAGATCGTT 1065687 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 | |||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||| Sbjct 1065686 ATGCCTTTCGTGTGGGTCGGAACTTACCCGATAAGGAATTTTGCTACCTTAGGACCGTTA 1065627 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTT 154 ||||||||||||||||| || ||||||| Sbjct 1065626 TAGTTACGGCCGCCGTTCACCGGGGCTT 1065599 >seq1529 Length=99461 Score = 149 bits (164), Expect = 1e-33 Identities = 194/261 (74%), Gaps = 13/261 (5%) Strand=Plus/Plus Query 28 TTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGA 87 |||| ||||| || | | ||| ||||||||||| ||||||||||| || | ||| ||| Sbjct 22327 TTTC-CCGAGCCTCTCTCTAAGATAGTGCCCAAAT-GTTACGCCTTTTGTACTGGTTGGA 22384 Query 88 ACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACT 147 | ||||| |||||||||||||||||| |||| |||| |||| |||| | |||| || || Sbjct 22385 ATTTACCTGACAAGGAATTTCGCTACTTTAGAACCGCTATAATTACAGTCGCCATTCACC 22444 Query 148 GGGGCTTAAGTTCACT-GCTTCGATTGCTCTAACAGATC-------CCCTTAACCTTCCA 199 | ||||| | |||| ||||| ||| || | ||| || ||||| |||||| Sbjct 22445 GAGGCTT-TGGCCACTGGCTTCCCTTG-TC-ATCAGGTCACCAACTTCCTTAGCCTTCCG 22501 Query 200 GCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTT 259 ||| |||||| | ||||| || || || ||||| |||||| | ||||| ||||||| Sbjct 22502 GCAGTGGGCAGTCATCAGCCCCCTTATATGGTCTTACGACTTTGTGAAAACCAGTGTTTT 22561 Query 260 TGGTAAACAGTCGCTTGGGCC 280 || || || ||| || || || Sbjct 22562 TGATATACGGTCACTAGGACC 22582 >seq665 Length=678873 Score = 134 bits (148), Expect = 3e-29 Identities = 177/241 (73%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 48 AGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTT 107 ||| ||||||||||| |||||| |||| |||| ||| |||| ||||| |||||||||||| Sbjct 390111 AGATAGTGCCCAAATAGTTACGTCTTTTGTGCTGGTGGGAATTTACCTGACAAGGAATTT 390170 Query 108 CGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACT-GCT 166 | |||| |||| || | |||| |||||| |||| || || | ||||| | |||| ||| Sbjct 390171 CACTACTTTAGAACTGCTATAATTACGGTCGCCATTCACCGAGGCTT-TGGCCACTGGCT 390229 Query 167 TCGATTGCTCTAACAGATC-------CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCT 219 || ||| || | ||| || |||||||||||| ||| |||||| | ||||| Sbjct 390230 TCCCTTG-TC-ATCAGGTCACCAACTTCCTTAACCTTCCGGCAGTGGGCAGTCATCAGCC 390287 Query 220 CCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGC 279 || || || ||||| |||||| | | | | || |||||| || | ||| || || | Sbjct 390288 CCCTTATATGGTCTTACGACTTTGTGAAGAACAGTATTTTTGATATATGGTCACTAGGAC 390347 Query 280 C 280 | Sbjct 390348 C 390348 >seq459 Length=1003533 Score = 120 bits (132), Expect = 6e-25 Identities = 138/185 (75%), Gaps = 7/185 (4%) Strand=Plus/Plus Query 48 AGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTT 107 ||||||||||||||||| ||| ||||| |||| ||| |||| ||||| |||||||||||| Sbjct 141846 AGACAGTGCCCAAATCGCTACACCTTTTGTGCTGGTTGGAATTTACCTGACAAGGAATTT 141905 Query 108 CGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTT 167 |||| |||| || |||||| ||| | |||| || || | ||||| | || ||| || Sbjct 141906 TCCTACTTTAGAACTGTTATAATTATAGTCGCCATTCACCGAGGCTT-TGGTCGCTGGTT 141964 Query 168 CGATTGCTC------TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCC 221 | | || | || | |||||||||||||||| |||||| | ||||| || Sbjct 141965 CCCCTTGTCATCAAGTCACCAACTTCCTTAACCTTCCAGCAGTGGGCAGTCATCAGCCCC 142024 Query 222 TATAC 226 ||||| Sbjct 142025 TATAC 142029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062320829952