Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01]
7,452 sequences; 1,373,365,927 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq432 107 2e-21
seq400 107 2e-21
seq7 96.9 4e-18
seq239 80.6 3e-13
seq93 80.6 3e-13
>seq432
Length=1036175
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 790289 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 790348
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 790349 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 790407
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 790408 ACAAGGAATTTCGCTACCTTAGGACCGTTA 790437
>seq400
Length=1097662
Score = 107 bits (118), Expect = 2e-21
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || |||| || |||||||||| || | | ||||||||| |
Sbjct 216489 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 216430
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| |||||||||||||||||||| ||||| |
Sbjct 216429 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 216370
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||| ||||
Sbjct 216369 GACAAGGAATTTCGCTACCTTAGGACAGTTA 216339
Score = 98.7 bits (108), Expect = 1e-18
Identities = 110/151 (73%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || ||| || |||||||||| || | | ||||||| | |
Sbjct 266626 CGGGGTCTTACCGTCTAGCCGTTGGTGCTCCGCATCTTCACGGAGAATTCAATTTCTCCG 266567
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| |||||||||||||||||||| ||||| |
Sbjct 266566 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 266507
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||| ||||
Sbjct 266506 GACAAGGAATTTCGCTACCTTAGGACAGTTA 266476
Score = 78.8 bits (86), Expect = 1e-12
Identities = 54/61 (89%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || || |||| ||||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct 129502 TACGCCTTTTGTGCGGGTCGAAACTTACCCGATAAGGAATTTCGCTACCTTAGGACCATT 129561
Query 173 A 173
|
Sbjct 129562 A 129562
>seq7
Length=4387591
Score = 96.9 bits (106), Expect = 4e-18
Identities = 58/61 (95%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516111 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 1516170
Query 173 A 173
|
Sbjct 1516171 A 1516171
>seq239
Length=1496907
Score = 80.6 bits (88), Expect = 3e-13
Identities = 52/57 (91%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|| |||||| ||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1065683 CCTTTCGTGTGGGTCGGAACTTACCCGATAAGGAATTTTGCTACCTTAGGACCGTTA 1065627
>seq93
Length=2366463
Score = 80.6 bits (88), Expect = 3e-13
Identities = 52/57 (91%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 117 CCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|| |||||| ||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 2071035 CCTTTCGTGTGGGTCGGAACTTACCCGATAAGGAATTTTGCTACCTTAGGACCGTTA 2071091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547160496948
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |