Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq345 208 2e-51 seq400 206 6e-51 seq1 190 4e-46 seq93 161 2e-37 seq887 114 3e-23 seq26 98.7 2e-18 >seq345 Length=1218342 Score = 208 bits (230), Expect = 2e-51 Identities = 166/197 (84%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| || | |||||||||||| || | | |||||| |||| Sbjct 621212 TTCACGACCCGTAGGCCTTCTATCTC-CACGCGGCATTG-CTCCGTTAAGCTTTCACCCA 621269 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||||| |||||||||||| | ||| Sbjct 621270 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCTAGT 621329 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||| Sbjct 621330 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 621389 Query 182 CAACTAGCTAATCCGAC 198 ||||||||||||| ||| Sbjct 621390 CAACTAGCTAATCAGAC 621406 >seq400 Length=1097662 Score = 206 bits (228), Expect = 6e-51 Identities = 180/220 (82%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 193979 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 194036 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 194037 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 194096 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 194097 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 194156 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 194157 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 194196 Score = 185 bits (204), Expect = 2e-44 Identities = 125/140 (89%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 |||||| || |||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 136258 CCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCC 136317 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| ||| Sbjct 136318 AGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCT 136377 Query 179 CACCAACTAGCTAATCCGAC 198 |||||||||||||||| ||| Sbjct 136378 CACCAACTAGCTAATCAGAC 136397 Score = 159 bits (176), Expect = 7e-37 Identities = 124/145 (86%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | |||||||||||| || ||||||||||||||| Sbjct 136115 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 136172 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 136173 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 136232 Query 122 GTGACTGATCATCCTCTCAGACCAG 146 ||| |||||||||||||| |||||| Sbjct 136233 GTGGCTGATCATCCTCTCGGACCAG 136257 Score = 131 bits (144), Expect = 4e-28 Identities = 147/193 (76%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || |||| || || |||| || | | || || |||||| | |||||||||| ||||| Sbjct 429313 TTCACAACCCATAGGCCTT-TTACCCCCATGCAGCATTGCCCC-ATCAGGCTTTTGCCCA 429256 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| || |||||||| |||||||||| ||||||||| | |||||||| | ||| | Sbjct 429255 TTGTGGAAAATTCCCCATTGCTGCCTCCTATAGGAGTCTAAGCTGTGTCTCAAT-CCAAT 429197 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| || |||||| | ||||| ||| |||| || |||| || ||| ||| |||||| Sbjct 429196 GTGGCTAGCCATCCTGTTGGACCAAGTACCGATCATCACCTTCGTAAGCTATTGCCTCAC 429137 Query 182 CAACTAGCTAATC 194 |||||| |||||| Sbjct 429136 CAACTAACTAATC 429124 >seq1 Length=6409783 Score = 190 bits (210), Expect = 4e-46 Identities = 157/189 (83%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69 ||| || |||||| | | || | ||||||| || | || |||||||||||||| || Sbjct 690196 CCGTAGGCCTTCTGCCTC-CAAGAGGCATTG-CTCCGTTAGACTTTCGCCCATTGTGAAA 690139 Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129 ||||||||||||||||||||||||||| ||| | |||||||||| |||||||| |||| Sbjct 690138 AATTCCCCACTGCTGCCTCCCGTAGGAGCGTGGGCTGTGTCTCAGTCCCAGTGTGGCTGA 690079 Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189 ||||||||||||||||| ||| |||| ||| |||||| ||| ||| |||||| ||||||| Sbjct 690078 TCATCCTCTCAGACCAGCTACTGATCATCGTCTTGGTAAGCTATTGCCTCACTAACTAGC 690019 Query 190 TAATCCGAC 198 ||||| ||| Sbjct 690018 TAATCAGAC 690010 >seq93 Length=2366463 Score = 161 bits (178), Expect = 2e-37 Identities = 190/252 (75%), Gaps = 19/252 (8%) Strand=Plus/Plus Query 87 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG 146 |||||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| Sbjct 2082499 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAG 2082558 Query 147 TTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCT 205 ||| |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | Sbjct 2082559 CTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCC 2082618 Query 206 CATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATT 265 | || || ||| || ||| |||| | | | | | || | |||||| Sbjct 2082619 CTCCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATT 2082664 Query 266 AGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCAC 323 ||| |||||||| ||| | ||| || ||| ||||| ||| || || |||||||| Sbjct 2082665 AGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCAC 2082722 Query 324 CCGTCCGCCGCT 335 ||||||||| || Sbjct 2082723 CCGTCCGCCACT 2082734 >seq887 Length=435773 Score = 114 bits (126), Expect = 3e-23 Identities = 84/98 (86%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 96 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 155 ||||||| |||||||||||| ||| |||| ||||||||||| ||||||||| ||| | || Sbjct 432384 AGTCTGGGCCGTGTCTCAGTCCCATTGTGGCTGATCATCCTTTCAGACCAGCTACTGGTC 432325 Query 156 GTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 | |||||||| ||| ||| ||| |||||||||||||| Sbjct 432324 ATTGCCTTGGTAAGCTATTGCCTTACCAACTAGCTAAT 432287 >seq26 Length=3464815 Score = 98.7 bits (108), Expect = 2e-18 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||||| ||||||| || |||| | ||||||||||| ||||| ||||| | ||| Sbjct 3215753 TCAGGCTTTCACCCATTGCAAAAAATTCTCTACTGCTGCCTCTCGTAGAAGTCTAGGCCG 3215694 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCA 145 | ||||||| |||| || ||||||||||||| ||||| Sbjct 3215693 TATCTCAGTCTCAGTATGGTTGATCATCCTCTCTGACCA 3215655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071920114560