Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01]
7,452 sequences; 1,373,365,927 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq345 208 2e-51
seq400 206 6e-51
seq1 190 4e-46
seq93 161 2e-37
seq887 114 3e-23
seq26 98.7 2e-18
>seq345
Length=1218342
Score = 208 bits (230), Expect = 2e-51
Identities = 166/197 (84%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
|| || | ||| || |||||| || | |||||||||||| || | | |||||| ||||
Sbjct 621212 TTCACGACCCGTAGGCCTTCTATCTC-CACGCGGCATTG-CTCCGTTAAGCTTTCACCCA 621269
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
||| || |||||||||||||||||||||||||||||||| |||||||||||| | |||
Sbjct 621270 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCTAGT 621329
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| ||||||
Sbjct 621330 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 621389
Query 182 CAACTAGCTAATCCGAC 198
||||||||||||| |||
Sbjct 621390 CAACTAGCTAATCAGAC 621406
>seq400
Length=1097662
Score = 206 bits (228), Expect = 6e-51
Identities = 180/220 (82%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||||| | | | | ||||||| ||| |||||| |||| ||||||| |||||||||
Sbjct 193979 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 194036
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| ||
Sbjct 194037 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 194096
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
|||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||||
Sbjct 194097 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 194156
Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218
|||||||| ||||| | || ||||||||| | |||||
Sbjct 194157 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 194196
Score = 185 bits (204), Expect = 2e-44
Identities = 125/140 (89%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
|||||| || |||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 136258 CCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCC 136317
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
|||||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||
Sbjct 136318 AGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCT 136377
Query 179 CACCAACTAGCTAATCCGAC 198
|||||||||||||||| |||
Sbjct 136378 CACCAACTAGCTAATCAGAC 136397
Score = 159 bits (176), Expect = 7e-37
Identities = 124/145 (86%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
|| || | ||| || |||||| | | |||||||||||| || |||||||||||||||
Sbjct 136115 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 136172
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
||| || |||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 136173 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 136232
Query 122 GTGACTGATCATCCTCTCAGACCAG 146
||| |||||||||||||| ||||||
Sbjct 136233 GTGGCTGATCATCCTCTCGGACCAG 136257
Score = 131 bits (144), Expect = 4e-28
Identities = 147/193 (76%), Gaps = 3/193 (2%)
Strand=Plus/Minus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
|| |||| || || |||| || | | || || |||||| | |||||||||| |||||
Sbjct 429313 TTCACAACCCATAGGCCTT-TTACCCCCATGCAGCATTGCCCC-ATCAGGCTTTTGCCCA 429256
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
|||| || |||||||| |||||||||| ||||||||| | |||||||| | ||| |
Sbjct 429255 TTGTGGAAAATTCCCCATTGCTGCCTCCTATAGGAGTCTAAGCTGTGTCTCAAT-CCAAT 429197
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| || |||||| | ||||| ||| |||| || |||| || ||| ||| ||||||
Sbjct 429196 GTGGCTAGCCATCCTGTTGGACCAAGTACCGATCATCACCTTCGTAAGCTATTGCCTCAC 429137
Query 182 CAACTAGCTAATC 194
|||||| ||||||
Sbjct 429136 CAACTAACTAATC 429124
>seq1
Length=6409783
Score = 190 bits (210), Expect = 4e-46
Identities = 157/189 (83%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69
||| || |||||| | | || | ||||||| || | || |||||||||||||| ||
Sbjct 690196 CCGTAGGCCTTCTGCCTC-CAAGAGGCATTG-CTCCGTTAGACTTTCGCCCATTGTGAAA 690139
Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129
||||||||||||||||||||||||||| ||| | |||||||||| |||||||| ||||
Sbjct 690138 AATTCCCCACTGCTGCCTCCCGTAGGAGCGTGGGCTGTGTCTCAGTCCCAGTGTGGCTGA 690079
Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189
||||||||||||||||| ||| |||| ||| |||||| ||| ||| |||||| |||||||
Sbjct 690078 TCATCCTCTCAGACCAGCTACTGATCATCGTCTTGGTAAGCTATTGCCTCACTAACTAGC 690019
Query 190 TAATCCGAC 198
||||| |||
Sbjct 690018 TAATCAGAC 690010
>seq93
Length=2366463
Score = 161 bits (178), Expect = 2e-37
Identities = 190/252 (75%), Gaps = 19/252 (8%)
Strand=Plus/Plus
Query 87 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG 146
|||||||||||||||| |||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 2082499 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAG 2082558
Query 147 TTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCT 205
||| |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || |
Sbjct 2082559 CTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCC 2082618
Query 206 CATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATT 265
| || || ||| || ||| |||| | | | | | || | ||||||
Sbjct 2082619 CTCCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATT 2082664
Query 266 AGCGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCAC 323
||| |||||||| ||| | ||| || ||| ||||| ||| || || ||||||||
Sbjct 2082665 AGCAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCAC 2082722
Query 324 CCGTCCGCCGCT 335
||||||||| ||
Sbjct 2082723 CCGTCCGCCACT 2082734
>seq887
Length=435773
Score = 114 bits (126), Expect = 3e-23
Identities = 84/98 (86%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 96 AGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATC 155
||||||| |||||||||||| ||| |||| ||||||||||| ||||||||| ||| | ||
Sbjct 432384 AGTCTGGGCCGTGTCTCAGTCCCATTGTGGCTGATCATCCTTTCAGACCAGCTACTGGTC 432325
Query 156 GTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193
| |||||||| ||| ||| ||| ||||||||||||||
Sbjct 432324 ATTGCCTTGGTAAGCTATTGCCTTACCAACTAGCTAAT 432287
>seq26
Length=3464815
Score = 98.7 bits (108), Expect = 2e-18
Identities = 81/99 (82%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106
|||||||||| ||||||| || |||| | ||||||||||| ||||| ||||| | |||
Sbjct 3215753 TCAGGCTTTCACCCATTGCAAAAAATTCTCTACTGCTGCCTCTCGTAGAAGTCTAGGCCG 3215694
Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCA 145
| ||||||| |||| || ||||||||||||| |||||
Sbjct 3215693 TATCTCAGTCTCAGTATGGTTGATCATCCTCTCTGACCA 3215655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071920114560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |