Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq432 255 2e-65 seq621 250 9e-64 seq93 214 7e-53 seq400 178 5e-42 seq7 178 5e-42 seq223 96.9 1e-17 >seq432 Length=1036175 Score = 255 bits (282), Expect = 2e-65 Identities = 343/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 791521 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 791580 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 791581 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 791640 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 791641 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 791700 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 791701 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 791753 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 791754 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 791807 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || ||| | |||| || | ||| || | ||||||| || ||||||||| Sbjct 791808 GCC--CCGGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 791860 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 791861 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 791920 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| || ||||| | |||||||||| ||| || Sbjct 791921 GGAGTATTTAGCCTTGCAAGGGGGTCCTTGCTGATTCACACGGGATTCCA 791970 >seq621 Length=738574 Score = 250 bits (276), Expect = 9e-64 Identities = 342/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Minus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 199555 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 199496 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 199495 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 199436 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 199435 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 199376 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 199375 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 199323 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || || | | | |||| |||||||||||||| |||||||| |||| | Sbjct 199322 CCAAGC--CATTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 199269 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || ||| | |||| || | ||| || | ||||||| || ||||||||| Sbjct 199268 GCC--CCGGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 199216 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| | Sbjct 199215 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 199156 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| || ||||| | |||||||||| ||| || Sbjct 199155 GGAGTATTTAGCCTTGCAAGGGGGTCCTTGCTGATTCACACGGGATTCCA 199106 >seq93 Length=2366463 Score = 214 bits (236), Expect = 7e-53 Identities = 328/461 (71%), Gaps = 29/461 (6%) Strand=Plus/Plus Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 |||||||||||| |||||| ||||| | | ||| || |||| ||||||||||| ||| Sbjct 2072267 AATGCATTTCGGAGAGAACTAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCAT 2072326 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCG 266 | |||||| || | | |||||| | ||| ||||||| |||| || || | |||| | Sbjct 2072327 AACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTACTTAGTTTCACCCAAG 2072386 Query 267 CTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GTGCCACTCATAC 324 ||||| |||| |||||||||||||| | || |||||| | | | ||| || | Sbjct 2072387 CTTCATCCTGGTCATGGATAGATCACCCAGGTTTGGGTCTATAAGCAGTGACAAT----T 2072442 Query 325 GCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGG-----TTAACCTCGCGAC 379 ||||||| |||||||||| ||||||||| | ||| |||||| || | Sbjct 2072443 GCCCTATGAAGACTCGCTTTTGCTACGGCT----CTGGTGGGTTCCCTTAACCAAGC--C 2072496 Query 380 ACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAG 438 || | | | |||| |||||||||||||| |||||||| |||| | || || Sbjct 2072497 ACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAGCCCCAA--- 2072550 Query 439 GCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCA 498 || | |||| || | ||| || | ||||||| || ||||||||||||| | Sbjct 2072551 GCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCAGATG 2072605 Query 499 GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTT 558 ||||| ||||||||| |||||||| |||||| | ||||| ||||||| |||||||||| Sbjct 2072606 GGGGTTCTTTTCACCCTTCCCTCATGGTACTACTTTGCTATTGGTCACCCAGGAGTATTT 2072665 Query 559 AGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 || ||| || ||||| | |||||||||| ||| || Sbjct 2072666 AGCCTTGCAAGGGGGTCCTTGCTGATTCACACGGGATTCCA 2072706 Score = 77.0 bits (84), Expect = 1e-11 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| |||||||||||| |||||| ||||| | | ||| || |||| |||||| Sbjct 2072175 GCTGCGCCTCAATGCATTTCGGAGAGAACTAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 2072234 Query 197 CCCTATCCACAGGTCATCCCCT 218 ||||| ||||| |||||| || Sbjct 2072235 CCCTAACCACAACTCATCCGCT 2072256 >seq400 Length=1097662 Score = 178 bits (196), Expect = 5e-42 Identities = 274/384 (71%), Gaps = 29/384 (8%) Strand=Plus/Plus Query 224 TTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGG 283 |||||| | ||| ||||||| ||||||| || | |||| |||||| |||| ||||| Sbjct 130837 TTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGG 130896 Query 284 ATAGATCACTTCGCTTCGGGTCT-TGATC-GTGCCACTCATACGCCCTATTCGGACTCGC 341 ||||||||| | ||||||||| | | | ||| || | ||||||| ||||||| Sbjct 130897 ATAGATCACCCAGGTTCGGGTCTATAAGCAGTGACAATT----GCCCTATGAAGACTCGC 130952 Query 342 TTTCGCTACGGCTACCCCACACGGGTT-----AACCTCGCGACACAACGCAA-ACTCGCA 395 ||| ||||||||| | ||||| |||| || ||| | | | |||| Sbjct 130953 TTTTGCTACGGCT----CTGGTGGGTTCCCTTAACCAAGC--CACTGCCTATGAGTCGCC 131006 Query 396 GGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACG 455 |||||||||||||| |||||||| |||| | || ||| | |||| || Sbjct 131007 GGCTCATTCTTCAACAGGCACGCGGTCAGA--GCCCCG----GGCTC-----CTCCCACT 131055 Query 456 GATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTT 515 | ||| || | ||||||| || ||||||||||||||| ||||| ||||||||| | Sbjct 131056 GCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCT 131115 Query 516 TCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTC 575 |||||||||||||| | |||||||||||||| |||||||||||| ||| || |||| Sbjct 131116 TCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGGGGTC 131175 Query 576 CCGCCAGATTCACACGAAATTTCA 599 | | |||||||||| ||| || Sbjct 131176 CTTGCTGATTCACACGGGATTCCA 131199 Score = 141 bits (156), Expect = 3e-31 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | ||| ||||| || | Sbjct 215275 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 215216 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |||| Sbjct 215215 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 215156 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || ||||||||||||||||| | | ||| | | Sbjct 215155 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 215096 Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 ||||||||||| ||||| |||||| | | |||||||| Sbjct 215095 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC 215056 Score = 141 bits (156), Expect = 3e-31 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | ||| ||||| || | Sbjct 265412 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 265353 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |||| Sbjct 265352 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 265293 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || ||||||||||||||||| | | ||| | | Sbjct 265292 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 265233 Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 ||||||||||| ||||| |||||| | | |||||||| Sbjct 265232 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC 265193 Score = 134 bits (148), Expect = 5e-29 Identities = 131/169 (78%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| |||||||||||| |||||| ||||| | | ||| || |||| |||||| Sbjct 130646 GCTGCGCCTCAATGCATTTCGGAGAGAACTAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 130705 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||| | |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 130706 CCCTAACCATAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 130765 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 | |||| |||||| |||| |||||||||||||| | |||||||| Sbjct 130766 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTC 130814 Score = 109 bits (120), Expect = 2e-21 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | | |||||| || ||| ||||||| |||| | Sbjct 214897 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTC 214838 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| Sbjct 214837 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 214778 Query 566 ACGGGTGGTCCC 577 |||||||||| Sbjct 214777 GAGGGTGGTCCC 214766 Score = 109 bits (120), Expect = 2e-21 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | | |||||| || ||| ||||||| |||| | Sbjct 265034 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTC 264975 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| Sbjct 264974 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 264915 Query 566 ACGGGTGGTCCC 577 |||||||||| Sbjct 264914 GAGGGTGGTCCC 264903 >seq7 Length=4387591 Score = 178 bits (196), Expect = 5e-42 Identities = 275/386 (71%), Gaps = 24/386 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 1517255 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 1517314 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 1517315 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 1517374 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 1517375 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 1517434 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | ||||||| |||||||||||||||||||| || || |||| Sbjct 1517435 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 1517487 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| || | || || Sbjct 1517488 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTTATCTCGT 1517545 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 ||| | || |||| || | ||| || | ||||||| || ||||||||| Sbjct 1517546 -----AAACTCGCT---CCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 1517597 Query 490 TCCCCGCCAGGGGTACTTTTCACCTT 515 |||| |||| |||||| |||| Sbjct 1517598 TCCCTAAATAGGGTTCTTTTCCCCTT 1517623 >seq223 Length=1565877 Score = 96.9 bits (106), Expect = 1e-17 Identities = 102/133 (77%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 468 ATGGTTTCAGGTACTATTTCACTCCCCGCC-AGGGGTACTTTTCACCTTTCCCTCACGGT 526 ||||||||| | ||||||||||||||| || ||| |||||||| |||||||| || Sbjct 77847 ATGGTTTCATATTCTATTTCACTCCCCGATGAGAGGTTCTTTTCACTCTTCCCTCATAGT 77788 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTC 586 | | | | |||||||||||| |||||||||| | |||| || ||||| | ||||| Sbjct 77787 AATACTTCACTATCGGTCACCTAGGAGTATTTTGCCTTACAAGGGGGTCCTTACTGATTC 77728 Query 587 ACACGAAATTTCA 599 |||| |||| || Sbjct 77727 ACACAGAATTCCA 77715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817464552448