Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01]
7,452 sequences; 1,373,365,927 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq432 255 2e-65
seq621 250 9e-64
seq93 214 7e-53
seq400 178 5e-42
seq7 178 5e-42
seq223 96.9 1e-17
>seq432
Length=1036175
Score = 255 bits (282), Expect = 2e-65
Identities = 343/470 (73%), Gaps = 27/470 (6%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 791521 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 791580
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| ||
Sbjct 791581 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 791640
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 791641 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 791700
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | ||||||| |||||||||||||||||||| || || ||||
Sbjct 791701 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 791753
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| | | | |||| |||||||||||||| |||||||| |||| |
Sbjct 791754 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 791807
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
|| ||| | |||| || | ||| || | ||||||| || |||||||||
Sbjct 791808 GCC--CCGGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 791860
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| |
Sbjct 791861 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 791920
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
||||||||||| ||| || ||||| | |||||||||| ||| ||
Sbjct 791921 GGAGTATTTAGCCTTGCAAGGGGGTCCTTGCTGATTCACACGGGATTCCA 791970
>seq621
Length=738574
Score = 250 bits (276), Expect = 9e-64
Identities = 342/470 (73%), Gaps = 27/470 (6%)
Strand=Plus/Minus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 199555 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 199496
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| ||
Sbjct 199495 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 199436
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 199435 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 199376
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | ||||||| |||||||||||||||||||| || || ||||
Sbjct 199375 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 199323
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || || | | | |||| |||||||||||||| |||||||| |||| |
Sbjct 199322 CCAAGC--CATTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA----GA 199269
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
|| ||| | |||| || | ||| || | ||||||| || |||||||||
Sbjct 199268 GCC--CCGGGCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 199216
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||||| ||||| ||||||||| ||||||||||||||| | |||||||||||||| |
Sbjct 199215 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCA 199156
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
||||||||||| ||| || ||||| | |||||||||| ||| ||
Sbjct 199155 GGAGTATTTAGCCTTGCAAGGGGGTCCTTGCTGATTCACACGGGATTCCA 199106
>seq93
Length=2366463
Score = 214 bits (236), Expect = 7e-53
Identities = 328/461 (71%), Gaps = 29/461 (6%)
Strand=Plus/Plus
Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206
|||||||||||| |||||| ||||| | | ||| || |||| ||||||||||| |||
Sbjct 2072267 AATGCATTTCGGAGAGAACTAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCAT 2072326
Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCG 266
| |||||| || | | |||||| | ||| ||||||| |||| || || | |||| |
Sbjct 2072327 AACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTACTTAGTTTCACCCAAG 2072386
Query 267 CTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GTGCCACTCATAC 324
||||| |||| |||||||||||||| | || |||||| | | | ||| || |
Sbjct 2072387 CTTCATCCTGGTCATGGATAGATCACCCAGGTTTGGGTCTATAAGCAGTGACAAT----T 2072442
Query 325 GCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGG-----TTAACCTCGCGAC 379
||||||| |||||||||| ||||||||| | ||| |||||| || |
Sbjct 2072443 GCCCTATGAAGACTCGCTTTTGCTACGGCT----CTGGTGGGTTCCCTTAACCAAGC--C 2072496
Query 380 ACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAG 438
|| | | | |||| |||||||||||||| |||||||| |||| | || ||
Sbjct 2072497 ACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAGCCCCAA--- 2072550
Query 439 GCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCA 498
|| | |||| || | ||| || | ||||||| || ||||||||||||| |
Sbjct 2072551 GCTC-----CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCAGATG 2072605
Query 499 GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTT 558
||||| ||||||||| |||||||| |||||| | ||||| ||||||| ||||||||||
Sbjct 2072606 GGGGTTCTTTTCACCCTTCCCTCATGGTACTACTTTGCTATTGGTCACCCAGGAGTATTT 2072665
Query 559 AGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
|| ||| || ||||| | |||||||||| ||| ||
Sbjct 2072666 AGCCTTGCAAGGGGGTCCTTGCTGATTCACACGGGATTCCA 2072706
Score = 77.0 bits (84), Expect = 1e-11
Identities = 66/82 (80%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| |||||||||||| |||||| ||||| | | ||| || |||| ||||||
Sbjct 2072175 GCTGCGCCTCAATGCATTTCGGAGAGAACTAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 2072234
Query 197 CCCTATCCACAGGTCATCCCCT 218
||||| ||||| |||||| ||
Sbjct 2072235 CCCTAACCACAACTCATCCGCT 2072256
>seq400
Length=1097662
Score = 178 bits (196), Expect = 5e-42
Identities = 274/384 (71%), Gaps = 29/384 (8%)
Strand=Plus/Plus
Query 224 TTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGG 283
|||||| | ||| ||||||| ||||||| || | |||| |||||| |||| |||||
Sbjct 130837 TTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGG 130896
Query 284 ATAGATCACTTCGCTTCGGGTCT-TGATC-GTGCCACTCATACGCCCTATTCGGACTCGC 341
||||||||| | ||||||||| | | | ||| || | ||||||| |||||||
Sbjct 130897 ATAGATCACCCAGGTTCGGGTCTATAAGCAGTGACAATT----GCCCTATGAAGACTCGC 130952
Query 342 TTTCGCTACGGCTACCCCACACGGGTT-----AACCTCGCGACACAACGCAA-ACTCGCA 395
||| ||||||||| | ||||| |||| || ||| | | | ||||
Sbjct 130953 TTTTGCTACGGCT----CTGGTGGGTTCCCTTAACCAAGC--CACTGCCTATGAGTCGCC 131006
Query 396 GGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACG 455
|||||||||||||| |||||||| |||| | || ||| | |||| ||
Sbjct 131007 GGCTCATTCTTCAACAGGCACGCGGTCAGA--GCCCCG----GGCTC-----CTCCCACT 131055
Query 456 GATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTT 515
| ||| || | ||||||| || ||||||||||||||| ||||| ||||||||| |
Sbjct 131056 GCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCT 131115
Query 516 TCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTC 575
|||||||||||||| | |||||||||||||| |||||||||||| ||| || ||||
Sbjct 131116 TCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGGGGTC 131175
Query 576 CCGCCAGATTCACACGAAATTTCA 599
| | |||||||||| ||| ||
Sbjct 131176 CTTGCTGATTCACACGGGATTCCA 131199
Score = 141 bits (156), Expect = 3e-31
Identities = 165/220 (75%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146
||||| |||||| |||| ||||||||||||| || | ||| ||||| || |
Sbjct 215275 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 215216
Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206
||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| ||||
Sbjct 215215 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 215156
Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265
| ||||||||| | ||| | || || ||||||||||||||||| | | ||| | |
Sbjct 215155 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 215096
Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305
||||||||||| ||||| |||||| | | ||||||||
Sbjct 215095 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC 215056
Score = 141 bits (156), Expect = 3e-31
Identities = 165/220 (75%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146
||||| |||||| |||| ||||||||||||| || | ||| ||||| || |
Sbjct 265412 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 265353
Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206
||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| ||||
Sbjct 265352 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 265293
Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265
| ||||||||| | ||| | || || ||||||||||||||||| | | ||| | |
Sbjct 265292 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 265233
Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305
||||||||||| ||||| |||||| | | ||||||||
Sbjct 265232 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC 265193
Score = 134 bits (148), Expect = 5e-29
Identities = 131/169 (78%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| |||||||||||| |||||| ||||| | | ||| || |||| ||||||
Sbjct 130646 GCTGCGCCTCAATGCATTTCGGAGAGAACTAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 130705
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||| | |||||| || | | |||||| | ||| ||||||| ||||||| ||
Sbjct 130706 CCCTAACCATAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 130765
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305
| |||| |||||| |||| |||||||||||||| | ||||||||
Sbjct 130766 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTC 130814
Score = 109 bits (120), Expect = 2e-21
Identities = 104/132 (79%), Gaps = 2/132 (2%)
Strand=Plus/Minus
Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505
|| |||| |||||| ||| | | |||||| || ||| ||||||| |||| |
Sbjct 214897 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTC 214838
Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565
||||||||||||||||||||||||||| |||||||||||| |||| || |||||||||
Sbjct 214837 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 214778
Query 566 ACGGGTGGTCCC 577
||||||||||
Sbjct 214777 GAGGGTGGTCCC 214766
Score = 109 bits (120), Expect = 2e-21
Identities = 104/132 (79%), Gaps = 2/132 (2%)
Strand=Plus/Minus
Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505
|| |||| |||||| ||| | | |||||| || ||| ||||||| |||| |
Sbjct 265034 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTC 264975
Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565
||||||||||||||||||||||||||| |||||||||||| |||| || |||||||||
Sbjct 264974 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 264915
Query 566 ACGGGTGGTCCC 577
||||||||||
Sbjct 264914 GAGGGTGGTCCC 264903
>seq7
Length=4387591
Score = 178 bits (196), Expect = 5e-42
Identities = 275/386 (71%), Gaps = 24/386 (6%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 1517255 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 1517314
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| ||
Sbjct 1517315 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 1517374
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 1517375 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 1517434
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | ||||||| |||||||||||||||||||| || || ||||
Sbjct 1517435 ACAAT----TGCCCTATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 1517487
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| | | | |||| |||||||||||||| |||||||| || | || ||
Sbjct 1517488 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTTATCTCGT 1517545
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
||| | || |||| || | ||| || | ||||||| || |||||||||
Sbjct 1517546 -----AAACTCGCT---CCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCAC 1517597
Query 490 TCCCCGCCAGGGGTACTTTTCACCTT 515
|||| |||| |||||| ||||
Sbjct 1517598 TCCCTAAATAGGGTTCTTTTCCCCTT 1517623
>seq223
Length=1565877
Score = 96.9 bits (106), Expect = 1e-17
Identities = 102/133 (77%), Gaps = 1/133 (1%)
Strand=Plus/Minus
Query 468 ATGGTTTCAGGTACTATTTCACTCCCCGCC-AGGGGTACTTTTCACCTTTCCCTCACGGT 526
||||||||| | ||||||||||||||| || ||| |||||||| |||||||| ||
Sbjct 77847 ATGGTTTCATATTCTATTTCACTCCCCGATGAGAGGTTCTTTTCACTCTTCCCTCATAGT 77788
Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTC 586
| | | | |||||||||||| |||||||||| | |||| || ||||| | |||||
Sbjct 77787 AATACTTCACTATCGGTCACCTAGGAGTATTTTGCCTTACAAGGGGGTCCTTACTGATTC 77728
Query 587 ACACGAAATTTCA 599
|||| |||| ||
Sbjct 77727 ACACAGAATTCCA 77715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817464552448
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