Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq432 214 4e-53 seq621 208 2e-51 seq400 206 7e-51 seq93 190 5e-46 seq7 138 3e-30 seq223 104 6e-20 >seq432 Length=1036175 Score = 214 bits (236), Expect = 4e-53 Identities = 307/415 (74%), Gaps = 16/415 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 791587 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 791643 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 791644 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 791699 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 791700 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 791757 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 791758 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 791814 Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | | |||||||||||| || |||||||||| | ||||||||||||||| | |||| Sbjct 791815 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 791873 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||||||| Sbjct 791874 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 791933 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | | ||||| | ||||| || || | ||||| || | ||||||| Sbjct 791934 TTGCAAGGGGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 791988 >seq621 Length=738574 Score = 208 bits (230), Expect = 2e-51 Identities = 306/415 (74%), Gaps = 16/415 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 199489 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 199433 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 199432 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 199377 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 199376 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 199319 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 |||| || || |||||| | | |||| | ||| ||| |||| |||| | | | Sbjct 199318 -GCCATTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 199262 Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | | |||||||||||| || |||||||||| | ||||||||||||||| | |||| Sbjct 199261 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 199203 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||||||| Sbjct 199202 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 199143 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | | ||||| | ||||| || || | ||||| || | ||||||| Sbjct 199142 TTGCAAGGGGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 199088 >seq400 Length=1097662 Score = 206 bits (228), Expect = 7e-51 Identities = 292/395 (74%), Gaps = 14/395 (4%) Strand=Plus/Plus Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88 || |||||| ||||||||||| |||||| ||||| | |||||| ||| || |||| Sbjct 130834 TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TCACCCAAGCTT-CATCCTGGT 130891 Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGA 148 ||| ||||||||| ||| | || ||||||||| | || ||| | |||||| |||| Sbjct 130892 CAT-GGATAGATCACCCAGGTT-CGGGTCTATAAGC-AGTGACAATT-GCCCTATGAAGA 130947 Query 149 CTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAGTCGC 206 ||||||||| |||||| ||| | ||| |||| | ||||||| || |||||| Sbjct 130948 CTCGCTTTT-GCTACGGCTCTGGTGGGTTCCCTTAACCAA-GCCACTGCCTATGAGTCGC 131005 Query 207 TGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGC-TCCCACTGCTTGTAC 265 | | |||| | ||| ||| |||| |||| | | | | | |||||||||||| Sbjct 131006 CGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGGGCTCCTCCCACTGCTTGGGA 131063 Query 266 GCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCA 325 || |||||||||| | ||||||||||||||| | |||||||||||| || |||||||| Sbjct 131064 GCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCACCCTTCCCTCA 131122 Query 326 CGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCAT 385 |||||||| ||| |||||||||| ||| |||||||||||||| | | ||||| | Sbjct 131123 CGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGGGGTCCTTGCTG 131182 Query 386 ATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||| || || | ||||| || | ||||||| Sbjct 131183 ATTCACACGGGATTCCACGTGCCCCATGCTACTCG 131217 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 214892 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 214834 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 214833 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 214774 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 214773 GTGGTCCCCC 214764 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 265029 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 264971 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 264970 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 264911 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 264910 GTGGTCCCCC 264901 >seq93 Length=2366463 Score = 190 bits (210), Expect = 5e-46 Identities = 296/406 (73%), Gaps = 19/406 (5%) Strand=Plus/Plus Query 20 TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTT 79 |||||| | || |||||| ||||||||||| |||| | ||||| | |||||| ||| Sbjct 2072333 TCCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTACTTAGTT-TCACCCAAGCTT- 2072389 Query 80 CAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCC 139 || |||| ||| ||||||||| ||| | ||| |||||||| | || ||| | ||| Sbjct 2072390 CATCCTGGTCAT-GGATAGATCACCCAGGTTT-GGGTCTATAAGC-AGTGACAATT-GCC 2072445 Query 140 CTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAA 197 ||| ||||||||||||| |||||| ||| | ||| |||| | ||||||| Sbjct 2072446 CTATGAAGACTCGCTTTT-GCTACGGCTCTGGTGGGTTCCCTTAACCAA-GCCACTGCCT 2072503 Query 198 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAAAGTGGGCTCCC 254 || |||||| | | |||| | ||| ||| |||| |||| ||| ||| | ||||| Sbjct 2072504 ATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCC--CAAGCTC--CTCCC 2072559 Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCG 314 |||||||| || |||||||||| | |||||||||||||| | |||||||||||| Sbjct 2072560 ACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCAGATG-GGGGTTCTTTTCA 2072618 Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374 || |||||||| ||||||| || |||| ||||| ||| |||||||||||||| | | Sbjct 2072619 CCCTTCCCTCATGGTACTACTTTGCTATTGGTCACCCAGGAGTATTTAGCCTTGCAAGGG 2072678 Query 375 GGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||| | ||||| || || | ||||| || | |||||| Sbjct 2072679 GGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGTTACTCG 2072724 >seq7 Length=4387591 Score = 138 bits (152), Expect = 3e-30 Identities = 229/314 (73%), Gaps = 15/314 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 1517321 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 1517377 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 1517378 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 1517433 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 1517434 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 1517491 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| || | | ||| | Sbjct 1517492 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTTATCTCGTAAACT 1517550 Query 247 GGG--CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 | ||||||||||||| || |||||||||| | ||||||||||| |||| || Sbjct 1517551 CGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACT-CCCTAAATAGG 1517609 Query 305 GTTCTTTTCGCCTT 318 ||||||||| |||| Sbjct 1517610 GTTCTTTTCCCCTT 1517623 >seq223 Length=1565877 Score = 104 bits (114), Expect = 6e-20 Identities = 199/287 (69%), Gaps = 11/287 (4%) Strand=Plus/Minus Query 137 GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTG 194 |||||| ||| ||||||||| |||| | ||| || ||| ||| | ||||||| Sbjct 77979 GCCCTATAAAGGCTCGCTTTT-GCTATGGCTCTGGTAGGTTCCTTTATCCAA-GCCACTG 77922 Query 195 AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAAAGTGGGCT 251 || ||| || ||| |||| | ||| ||| | || ||| ||| | | | || Sbjct 77921 CTTATGAGTAGCCGACTCATTCTTCAACAGGCAAGCGATCAGAGCCC--CGAGCTC--CT 77866 Query 252 CCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTT 311 |||||| |||| || || ||||||| ||||||||||||||| | | |||||||| Sbjct 77865 CCCACTACTTGCGAGCTTATGGTTTCATATTCTATTTCACTCCCCGATGAGAGGTTCTTT 77806 Query 312 TCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAG 371 || | |||||||| ||| || |||||||||||||| || ||||||| ||||| | Sbjct 77805 TCACTCTTCCCTCATAGTAATACTTCACTATCGGTCACCTAGGAGTATTTTGCCTTACAA 77746 Query 372 GATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 | ||||| | ||||| ||| | || | | ||| || | ||||| Sbjct 77745 GGGGGTCCTTACTGATTCACACAGAATTCCACATGCCCCATGCTACT 77699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241507475968