Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01]
7,452 sequences; 1,373,365,927 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq432 214 4e-53
seq621 208 2e-51
seq400 206 7e-51
seq93 190 5e-46
seq7 138 3e-30
seq223 104 6e-20
>seq432
Length=1036175
Score = 214 bits (236), Expect = 4e-53
Identities = 307/415 (74%), Gaps = 16/415 (4%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 791587 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 791643
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 791644 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 791699
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 791700 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 791757
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||||| || |||||| | | |||| | ||| ||| |||| |||| | | |
Sbjct 791758 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 791814
Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305
| | |||||||||||| || |||||||||| | ||||||||||||||| | ||||
Sbjct 791815 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 791873
Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365
|||||||| || |||||||||||||||| ||| |||||||||| ||| |||||||||||
Sbjct 791874 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 791933
Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||| | | ||||| | ||||| || || | ||||| || | |||||||
Sbjct 791934 TTGCAAGGGGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 791988
>seq621
Length=738574
Score = 208 bits (230), Expect = 2e-51
Identities = 306/415 (74%), Gaps = 16/415 (4%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 199489 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 199433
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 199432 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 199377
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 199376 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 199319
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
|||| || || |||||| | | |||| | ||| ||| |||| |||| | | |
Sbjct 199318 -GCCATTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGG 199262
Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305
| | |||||||||||| || |||||||||| | ||||||||||||||| | ||||
Sbjct 199261 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 199203
Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365
|||||||| || |||||||||||||||| ||| |||||||||| ||| |||||||||||
Sbjct 199202 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 199143
Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||| | | ||||| | ||||| || || | ||||| || | |||||||
Sbjct 199142 TTGCAAGGGGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 199088
>seq400
Length=1097662
Score = 206 bits (228), Expect = 7e-51
Identities = 292/395 (74%), Gaps = 14/395 (4%)
Strand=Plus/Plus
Query 29 TTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCC 88
|| |||||| ||||||||||| |||||| ||||| | |||||| ||| || ||||
Sbjct 130834 TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TCACCCAAGCTT-CATCCTGGT 130891
Query 89 CATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGA 148
||| ||||||||| ||| | || ||||||||| | || ||| | |||||| ||||
Sbjct 130892 CAT-GGATAGATCACCCAGGTT-CGGGTCTATAAGC-AGTGACAATT-GCCCTATGAAGA 130947
Query 149 CTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAGTCGC 206
||||||||| |||||| ||| | ||| |||| | ||||||| || ||||||
Sbjct 130948 CTCGCTTTT-GCTACGGCTCTGGTGGGTTCCCTTAACCAA-GCCACTGCCTATGAGTCGC 131005
Query 207 TGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGC-TCCCACTGCTTGTAC 265
| | |||| | ||| ||| |||| |||| | | | | | ||||||||||||
Sbjct 131006 CGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCCGGGCTCCTCCCACTGCTTGGGA 131063
Query 266 GCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCA 325
|| |||||||||| | ||||||||||||||| | |||||||||||| || ||||||||
Sbjct 131064 GCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGGTTCTTTTCACCCTTCCCTCA 131122
Query 326 CGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCAT 385
|||||||| ||| |||||||||| ||| |||||||||||||| | | ||||| |
Sbjct 131123 CGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGGGGTCCTTGCTG 131182
Query 386 ATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||||| || || | ||||| || | |||||||
Sbjct 131183 ATTCACACGGGATTCCACGTGCCCCATGCTACTCG 131217
Score = 102 bits (112), Expect = 2e-19
Identities = 102/130 (78%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312
|||| |||| ||||| | | ||||| ||| ||| ||||||| | ||||||||||
Sbjct 214892 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 214834
Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372
| |||||||||||||||||| || | |||||||||| | || | || |||| ||| ||||
Sbjct 214833 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 214774
Query 373 ATGGTCCCCC 382
|||||||||
Sbjct 214773 GTGGTCCCCC 214764
Score = 102 bits (112), Expect = 2e-19
Identities = 102/130 (78%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312
|||| |||| ||||| | | ||||| ||| ||| ||||||| | ||||||||||
Sbjct 265029 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 264971
Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372
| |||||||||||||||||| || | |||||||||| | || | || |||| ||| ||||
Sbjct 264970 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 264911
Query 373 ATGGTCCCCC 382
|||||||||
Sbjct 264910 GTGGTCCCCC 264901
>seq93
Length=2366463
Score = 190 bits (210), Expect = 5e-46
Identities = 296/406 (73%), Gaps = 19/406 (5%)
Strand=Plus/Plus
Query 20 TCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTT 79
|||||| | || |||||| ||||||||||| |||| | ||||| | |||||| |||
Sbjct 2072333 TCCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCTACTTAGTT-TCACCCAAGCTT- 2072389
Query 80 CAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCC 139
|| |||| ||| ||||||||| ||| | ||| |||||||| | || ||| | |||
Sbjct 2072390 CATCCTGGTCAT-GGATAGATCACCCAGGTTT-GGGTCTATAAGC-AGTGACAATT-GCC 2072445
Query 140 CTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAA 197
||| ||||||||||||| |||||| ||| | ||| |||| | |||||||
Sbjct 2072446 CTATGAAGACTCGCTTTT-GCTACGGCTCTGGTGGGTTCCCTTAACCAA-GCCACTGCCT 2072503
Query 198 ATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAAAGTGGGCTCCC 254
|| |||||| | | |||| | ||| ||| |||| |||| ||| ||| | |||||
Sbjct 2072504 ATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCC--CAAGCTC--CTCCC 2072559
Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCG 314
|||||||| || |||||||||| | |||||||||||||| | ||||||||||||
Sbjct 2072560 ACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCAGATG-GGGGTTCTTTTCA 2072618
Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374
|| |||||||| ||||||| || |||| ||||| ||| |||||||||||||| | |
Sbjct 2072619 CCCTTCCCTCATGGTACTACTTTGCTATTGGTCACCCAGGAGTATTTAGCCTTGCAAGGG 2072678
Query 375 GGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||||| | ||||| || || | ||||| || | ||||||
Sbjct 2072679 GGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGTTACTCG 2072724
>seq7
Length=4387591
Score = 138 bits (152), Expect = 3e-30
Identities = 229/314 (73%), Gaps = 15/314 (5%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 1517321 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 1517377
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 1517378 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 1517433
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 1517434 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 1517491
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||||| || |||||| | | |||| | ||| ||| |||| || | | ||| |
Sbjct 1517492 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTTATCTCGTAAACT 1517550
Query 247 GGG--CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304
| ||||||||||||| || |||||||||| | ||||||||||| |||| ||
Sbjct 1517551 CGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACT-CCCTAAATAGG 1517609
Query 305 GTTCTTTTCGCCTT 318
||||||||| ||||
Sbjct 1517610 GTTCTTTTCCCCTT 1517623
>seq223
Length=1565877
Score = 104 bits (114), Expect = 6e-20
Identities = 199/287 (69%), Gaps = 11/287 (4%)
Strand=Plus/Minus
Query 137 GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTG 194
|||||| ||| ||||||||| |||| | ||| || ||| ||| | |||||||
Sbjct 77979 GCCCTATAAAGGCTCGCTTTT-GCTATGGCTCTGGTAGGTTCCTTTATCCAA-GCCACTG 77922
Query 195 AAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAAAGTGGGCT 251
|| ||| || ||| |||| | ||| ||| | || ||| ||| | | | ||
Sbjct 77921 CTTATGAGTAGCCGACTCATTCTTCAACAGGCAAGCGATCAGAGCCC--CGAGCTC--CT 77866
Query 252 CCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTT 311
|||||| |||| || || ||||||| ||||||||||||||| | | ||||||||
Sbjct 77865 CCCACTACTTGCGAGCTTATGGTTTCATATTCTATTTCACTCCCCGATGAGAGGTTCTTT 77806
Query 312 TCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAG 371
|| | |||||||| ||| || |||||||||||||| || ||||||| ||||| |
Sbjct 77805 TCACTCTTCCCTCATAGTAATACTTCACTATCGGTCACCTAGGAGTATTTTGCCTTACAA 77746
Query 372 GATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418
| ||||| | ||||| ||| | || | | ||| || | |||||
Sbjct 77745 GGGGGTCCTTACTGATTCACACAGAATTCCACATGCCCCATGCTACT 77699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241507475968
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