Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01]
7,452 sequences; 1,373,365,927 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq1 179 7e-43
seq345 178 3e-42
seq400 174 3e-41
seq93 170 4e-40
seq887 98.7 2e-18
seq26 78.8 2e-12
>seq1
Length=6409783
Score = 179 bits (198), Expect = 7e-43
Identities = 224/305 (73%), Gaps = 18/305 (6%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | | || |||| ||||||||| || || |||||||||||||||||||||
Sbjct 690173 GGCATTGCTCCGTTAGACTTTCGCCCATTGTGAAAAATTCCCCACTGCTGCCTCCCGTAG 690114
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||| ||||| |||||||||||||| |||||| | ||| |||||||| || ||||| |||
Sbjct 690113 GAGCGTGGGCTGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 690054
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| |||||| ||||| ||||| |||||| | ||||||||| || ||
Sbjct 690053 CATCGTCTTGGTAAGCTATTGCCTCACTAACTAGCTAATCAGACGCGAGCCCCTCCTTGG 689994
Query 181 G-CGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
| ||| || || ||| ||||| | | || | ||||||| | |
Sbjct 689993 GTGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAACAAT 689950
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
||||| || || |||| ||| || |||||||| || | | ||||||||||| |||
Sbjct 689949 CGTTTTCAGCTATTGTTCCCCTCCCAATGGCAGGTT-CTTATGCGTTACTCACCCATCCA 689891
Query 300 CCACT 304
|||||
Sbjct 689890 CCACT 689886
>seq345
Length=1218342
Score = 178 bits (196), Expect = 3e-42
Identities = 216/292 (74%), Gaps = 18/292 (6%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | | | | |||| ||||||| | || || |||||||||||||||||||||
Sbjct 621243 GGCATTGCTCCGTTAAGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 621302
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||| | |||||| | ||| |||||| | || ||||| |||
Sbjct 621303 GAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 621362
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || |
Sbjct 621363 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 621422
Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|| ||| || || ||| ||||| | | || | | |||||||
Sbjct 621423 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TAGGGGATATTAGCAGC 621466
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCA 291
|||||||| ||| |||| ||| || |||||||| || ||| ||||||||
Sbjct 621467 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCA 621517
>seq400
Length=1097662
Score = 174 bits (192), Expect = 3e-41
Identities = 129/151 (85%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 25 CCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCC 84
|||||| | || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136258 CCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCC 136317
Query 85 AATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCT 144
| |||||| | ||| |||||| | || ||||| |||| ||| |||||| |||||| ||
Sbjct 136318 AGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCT 136377
Query 145 CACCAACTACCTAATCGGCCGCGAGCCCATC 175
||||||||| |||||| | ||||||||| ||
Sbjct 136378 CACCAACTAGCTAATCAGACGCGAGCCCCTC 136408
Score = 136 bits (150), Expect = 8e-30
Identities = 122/153 (80%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| ||||||
Sbjct 194019 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 194078
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||||||||||||||||||| |||||| | ||| || || || |||| ||| | ||
Sbjct 194079 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 194138
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159
|||||| || ||| || ||||||||||||||
Sbjct 194139 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 194171
Score = 127 bits (140), Expect = 4e-27
Identities = 96/113 (85%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 136146 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 136205
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGC 113
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||
Sbjct 136206 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGC 136258
Score = 114 bits (126), Expect = 3e-23
Identities = 125/165 (76%), Gaps = 1/165 (1%)
Strand=Plus/Minus
Query 11 CATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGC 70
||||||| ||| ||||||||| || || ||||| |||||||||| ||||||||| ||
Sbjct 429272 CATCAGGCTTTTGCCCATTGTGGAAAATTCCCCATTGCTGCCTCCTATAGGAGTCTAAGC 429213
Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130
|||||||| ||| |||||||| || ||| | | || |||||||| || |||
Sbjct 429212 TGTGTCTCAATCC-AATGTGGCTAGCCATCCTGTTGGACCAAGTACCGATCATCACCTTC 429154
Query 131 GTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175
|| |||||| ||||||||||| |||||| |||||||| ||
Sbjct 429153 GTAAGCTATTGCCTCACCAACTAACTAATCAAATGCGAGCCCCTC 429109
>seq93
Length=2366463
Score = 170 bits (188), Expect = 4e-40
Identities = 191/253 (75%), Gaps = 18/253 (7%)
Strand=Plus/Plus
Query 53 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGG 112
||||||||||||||||||||||||||||||||| |||||| | ||| |||||| | || |
Sbjct 2082499 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAG 2082558
Query 113 CTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCC 172
|||| |||| ||| |||||| |||||| ||||||||||| |||||| | |||||||||
Sbjct 2082559 CTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCC 2082618
Query 173 ATCTTTCAGC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTA 231
|| | || ||| || || ||| ||||| | | || | ||||
Sbjct 2082619 CTCCTCGGGCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTA 2082662
Query 232 TTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCA 291
||||| |||||||| ||| |||| ||| || |||||||| || ||| ||||||||
Sbjct 2082663 TTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCA 2082721
Query 292 CCCGTCCGCCACT 304
|||||||||||||
Sbjct 2082722 CCCGTCCGCCACT 2082734
>seq887
Length=435773
Score = 98.7 bits (108), Expect = 2e-18
Identities = 92/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 62 AGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATC 121
|||||||||||||||||||||||| |||||| | ||| ||| |||| || ||||| | ||
Sbjct 432384 AGTCTGGGCCGTGTCTCAGTCCCATTGTGGCTGATCATCCTTTCAGACCAGCTACTGGTC 432325
Query 122 GTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178
| | |||||| |||||| || |||||||| ||||| | || ||||| || ||
Sbjct 432324 ATTGCCTTGGTAAGCTATTGCCTTACCAACTAGCTAATTAGATGCAAGCCCCTCCTT 432268
>seq26
Length=3464815
Score = 78.8 bits (86), Expect = 2e-12
Identities = 73/93 (78%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72
||||| |||| ||||||| || || | | ||||||||||| ||||| ||||| |||||
Sbjct 3215753 TCAGGCTTTCACCCATTGCAAAAAATTCTCTACTGCTGCCTCTCGTAGAAGTCTAGGCCG 3215694
Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTC 105
| |||||||| || | ||| | ||| ||||||
Sbjct 3215693 TATCTCAGTCTCAGTATGGTTGATCATCCTCTC 3215661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 998325599232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |