Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1 179 7e-43 seq345 178 3e-42 seq400 174 3e-41 seq93 170 4e-40 seq887 98.7 2e-18 seq26 78.8 2e-12 >seq1 Length=6409783 Score = 179 bits (198), Expect = 7e-43 Identities = 224/305 (73%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | | || |||| ||||||||| || || ||||||||||||||||||||| Sbjct 690173 GGCATTGCTCCGTTAGACTTTCGCCCATTGTGAAAAATTCCCCACTGCTGCCTCCCGTAG 690114 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||| ||||| |||||||||||||| |||||| | ||| |||||||| || ||||| ||| Sbjct 690113 GAGCGTGGGCTGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 690054 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||| ||||| |||||| | ||||||||| || || Sbjct 690053 CATCGTCTTGGTAAGCTATTGCCTCACTAACTAGCTAATCAGACGCGAGCCCCTCCTTGG 689994 Query 181 G-CGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 | ||| || || ||| ||||| | | || | ||||||| | | Sbjct 689993 GTGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAACAAT 689950 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 ||||| || || |||| ||| || |||||||| || | | ||||||||||| ||| Sbjct 689949 CGTTTTCAGCTATTGTTCCCCTCCCAATGGCAGGTT-CTTATGCGTTACTCACCCATCCA 689891 Query 300 CCACT 304 ||||| Sbjct 689890 CCACT 689886 >seq345 Length=1218342 Score = 178 bits (196), Expect = 3e-42 Identities = 216/292 (74%), Gaps = 18/292 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | | | | |||| ||||||| | || || ||||||||||||||||||||| Sbjct 621243 GGCATTGCTCCGTTAAGCTTTCACCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 621302 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||| | |||||| | ||| |||||| | || ||||| ||| Sbjct 621303 GAGTCTGGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 621362 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 621363 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 621422 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | | ||||||| Sbjct 621423 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TAGGGGATATTAGCAGC 621466 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCA 291 |||||||| ||| |||| ||| || |||||||| || ||| |||||||| Sbjct 621467 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCA 621517 >seq400 Length=1097662 Score = 174 bits (192), Expect = 3e-41 Identities = 129/151 (85%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 25 CCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCC 84 |||||| | || || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 136258 CCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCC 136317 Query 85 AATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCT 144 | |||||| | ||| |||||| | || ||||| |||| ||| |||||| |||||| || Sbjct 136318 AGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCT 136377 Query 145 CACCAACTACCTAATCGGCCGCGAGCCCATC 175 ||||||||| |||||| | ||||||||| || Sbjct 136378 CACCAACTAGCTAATCAGACGCGAGCCCCTC 136408 Score = 136 bits (150), Expect = 8e-30 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 194019 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 194078 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 194079 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 194138 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 194139 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 194171 Score = 127 bits (140), Expect = 4e-27 Identities = 96/113 (85%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 136146 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 136205 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGC 113 ||||||||||||||||||||||||| |||||| | ||| |||||| | || || Sbjct 136206 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGC 136258 Score = 114 bits (126), Expect = 3e-23 Identities = 125/165 (76%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 11 CATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGC 70 ||||||| ||| ||||||||| || || ||||| |||||||||| ||||||||| || Sbjct 429272 CATCAGGCTTTTGCCCATTGTGGAAAATTCCCCATTGCTGCCTCCTATAGGAGTCTAAGC 429213 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 |||||||| ||| |||||||| || ||| | | || |||||||| || ||| Sbjct 429212 TGTGTCTCAATCC-AATGTGGCTAGCCATCCTGTTGGACCAAGTACCGATCATCACCTTC 429154 Query 131 GTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 || |||||| ||||||||||| |||||| |||||||| || Sbjct 429153 GTAAGCTATTGCCTCACCAACTAACTAATCAAATGCGAGCCCCTC 429109 >seq93 Length=2366463 Score = 170 bits (188), Expect = 4e-40 Identities = 191/253 (75%), Gaps = 18/253 (7%) Strand=Plus/Plus Query 53 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGG 112 ||||||||||||||||||||||||||||||||| |||||| | ||| |||||| | || | Sbjct 2082499 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAG 2082558 Query 113 CTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCC 172 |||| |||| ||| |||||| |||||| ||||||||||| |||||| | ||||||||| Sbjct 2082559 CTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCC 2082618 Query 173 ATCTTTCAGC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTA 231 || | || ||| || || ||| ||||| | | || | |||| Sbjct 2082619 CTCCTCGGGCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTA 2082662 Query 232 TTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCA 291 ||||| |||||||| ||| |||| ||| || |||||||| || ||| |||||||| Sbjct 2082663 TTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCA 2082721 Query 292 CCCGTCCGCCACT 304 ||||||||||||| Sbjct 2082722 CCCGTCCGCCACT 2082734 >seq887 Length=435773 Score = 98.7 bits (108), Expect = 2e-18 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 62 AGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATC 121 |||||||||||||||||||||||| |||||| | ||| ||| |||| || ||||| | || Sbjct 432384 AGTCTGGGCCGTGTCTCAGTCCCATTGTGGCTGATCATCCTTTCAGACCAGCTACTGGTC 432325 Query 122 GTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178 | | |||||| |||||| || |||||||| ||||| | || ||||| || || Sbjct 432324 ATTGCCTTGGTAAGCTATTGCCTTACCAACTAGCTAATTAGATGCAAGCCCCTCCTT 432268 >seq26 Length=3464815 Score = 78.8 bits (86), Expect = 2e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| || || | | ||||||||||| ||||| ||||| ||||| Sbjct 3215753 TCAGGCTTTCACCCATTGCAAAAAATTCTCTACTGCTGCCTCTCGTAGAAGTCTAGGCCG 3215694 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTC 105 | |||||||| || | ||| | ||| |||||| Sbjct 3215693 TATCTCAGTCTCAGTATGGTTGATCATCCTCTC 3215661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998325599232