Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq7 223 8e-56 seq432 217 3e-54 seq93 187 6e-45 seq400 167 5e-39 seq3223 120 7e-25 seq1 104 5e-20 seq176 91.5 3e-16 >seq7 Length=4387591 Score = 223 bits (246), Expect = 8e-56 Identities = 301/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 1516705 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 1516764 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 1516765 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 1516824 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||| | || | ||| ||||| || || | | Sbjct 1516825 ACATTCTCGCTTCCGCTTCG--TCCACCGCTGC-TCGCGCGGGTGCTTC-CCTCTAAGGC 1516880 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| ||||| Sbjct 1516881 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTAA- 1516936 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 1516937 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 1516995 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 1516996 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 1517055 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 1517056 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 1517104 >seq432 Length=1036175 Score = 217 bits (240), Expect = 3e-54 Identities = 300/409 (73%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 790971 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 791030 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 791031 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 791090 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||| | || | ||| ||||| || || | | Sbjct 791091 ACATTCTCGCTTCCGCTTCG--TCCACCGCTGC-TCGCGCGGGTGCTTC-CCTCTAAGGC 791146 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| ||||| Sbjct 791147 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTAA- 791202 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 791203 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 791261 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 791262 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 791321 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| |||||||||||||||| Sbjct 791322 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCAGGCTGTTTCCCTCTCG 791370 >seq93 Length=2366463 Score = 187 bits (206), Expect = 6e-45 Identities = 179/226 (79%), Gaps = 9/226 (4%) Strand=Plus/Plus Query 179 ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCC 234 ||||||||||||| | || ||| | ||||||||||||| ||| ||||| ||| Sbjct 2071804 ACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTAA-CCC 2071859 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || | ||| ||||||| | | || || |||||||||||||||||||||||||||| | Sbjct 2071860 CGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGT 2071918 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354 ||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||||| Sbjct 2071919 GGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGC 2071978 Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 2071979 GGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 2072024 >seq400 Length=1097662 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 215552 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 215496 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 215495 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 215436 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 215435 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 215376 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 215375 GTTTCCCTCTCG 215364 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 265689 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 265633 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 265632 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 265573 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 265572 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 265513 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 265512 GTTTCCCTCTCG 265501 Score = 134 bits (148), Expect = 3e-29 Identities = 113/136 (83%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 |||||||||||| |||||||||||||| |||||||||| | || |||||||||| ||||| Sbjct 130361 AGTGAGCTATTATGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCT 130420 Query 326 ACGCAACTCC-ACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTG 384 || ||||| || |||||| ||||||| || ||||||||||||||| |||| | Sbjct 130421 CTGC-ACTCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTAGTGATTCG 130479 Query 385 GGCTGTTTCCCTCTCG 400 |||| ||||||||||| Sbjct 130480 GGCTATTTCCCTCTCG 130495 >seq3223 Length=16365 Score = 120 bits (132), Expect = 7e-25 Identities = 250/358 (70%), Gaps = 27/358 (8%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGAC 59 ||||||||||| ||||||| |||||| || ||||||||| | || ||| ||| Sbjct 569 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCTGTGGATGAACCTTG-- 512 Query 60 CCTGGA---ACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCAT 115 |||| |||||| | | |||| | | |||||| |||| | || |||||| Sbjct 511 --TGGAGAAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAA 454 Query 116 GCCTGCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTG 173 ||| ||||||| || ||| | |||||| | || | ||| ||||| || | Sbjct 453 GCCAACATTCTCGCTTTCGCTTTG--TCCACCGCTGC-TCGCGCGGGTGCTTC-CCTTTA 398 Query 174 ACACG--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACT 227 | || ||||||||||||| | || ||| | ||||| ||||| | ||| || Sbjct 397 AGGCGGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAACTTCGACAGATTGCT 341 Query 228 TAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGT-GAGCTATTACGCACTCTT 286 ||| ||||| | ||| |||||| | | || || |||| |||||||||||||||||| Sbjct 340 TAA-CCCCGTT-CATCTTCGGCGTAAGAGCGCTCGATCAGTTGAGCTATTACGCACTCTT 283 Query 287 TCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTT 344 |||||| |||||||||| | || |||||||||| ||||| ||| | | || |||||| Sbjct 282 TCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTT 225 >seq1 Length=6409783 Score = 104 bits (114), Expect = 5e-20 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 || |||||||||||||||||||||||| |||||||||| | || |||||||||| ||||| Sbjct 696194 AGAGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCT 696135 Query 326 ACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTA 372 ||| | | || |||||| ||||||| || ||||||| |||| Sbjct 696134 CTGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGACTTA 696088 >seq176 Length=1829295 Score = 91.5 bits (100), Expect = 3e-16 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 283 TCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCT 342 ||||| || |||||||||||| |||||||| |||||| ||||| || ||||||| | Sbjct 1318912 TCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGT 1318971 Query 343 TTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTT 392 |||||||| | || |||| ||| ||||||||| |||||| ||||| Sbjct 1318972 TTCCCACTTAACCATGACTTTGGGACCTTAGCTGGCAGTCTGGGTTGTTT 1319021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177512245248