Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01]
7,452 sequences; 1,373,365,927 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq7 223 8e-56
seq432 217 3e-54
seq93 187 6e-45
seq400 167 5e-39
seq3223 120 7e-25
seq1 104 5e-20
seq176 91.5 3e-16
>seq7
Length=4387591
Score = 223 bits (246), Expect = 8e-56
Identities = 301/409 (74%), Gaps = 18/409 (4%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 1516705 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 1516764
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 1516765 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 1516824
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || |||||| | || | ||| ||||| || || | |
Sbjct 1516825 ACATTCTCGCTTCCGCTTCG--TCCACCGCTGC-TCGCGCGGGTGCTTC-CCTCTAAGGC 1516880
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | || ||| | ||||||||||||| ||| |||||
Sbjct 1516881 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTAA- 1516936
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| ||||||| | | || || |||||||||||||||||||||||||||
Sbjct 1516937 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 1516995
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||
Sbjct 1516996 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 1517055
Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 1517056 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 1517104
>seq432
Length=1036175
Score = 217 bits (240), Expect = 3e-54
Identities = 300/409 (73%), Gaps = 18/409 (4%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 790971 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 791030
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 791031 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 791090
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || |||||| | || | ||| ||||| || || | |
Sbjct 791091 ACATTCTCGCTTCCGCTTCG--TCCACCGCTGC-TCGCGCGGGTGCTTC-CCTCTAAGGC 791146
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | || ||| | ||||||||||||| ||| |||||
Sbjct 791147 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTAA- 791202
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| ||||||| | | || || |||||||||||||||||||||||||||
Sbjct 791203 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 791261
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||
Sbjct 791262 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 791321
Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| || |||||||||||||||| ||||| ||||||||||||||||
Sbjct 791322 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCAGGCTGTTTCCCTCTCG 791370
>seq93
Length=2366463
Score = 187 bits (206), Expect = 6e-45
Identities = 179/226 (79%), Gaps = 9/226 (4%)
Strand=Plus/Plus
Query 179 ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCC 234
||||||||||||| | || ||| | ||||||||||||| ||| ||||| |||
Sbjct 2071804 ACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTAA-CCC 2071859
Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294
|| | ||| ||||||| | | || || |||||||||||||||||||||||||||| |
Sbjct 2071860 CGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGT 2071918
Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354
||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||||
Sbjct 2071919 GGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGC 2071978
Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| |||||||||||||||| ||||| |||||||||||||||||
Sbjct 2071979 GGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 2072024
>seq400
Length=1097662
Score = 167 bits (184), Expect = 5e-39
Identities = 153/192 (80%), Gaps = 6/192 (3%)
Strand=Plus/Minus
Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268
||||||| | || |||| ||||| | |||||| |||| || ||| || |||||||
Sbjct 215552 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 215496
Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328
|||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 215495 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 215436
Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388
| ||| |||||| ||||| ||| | ||||||| ||||||| | ||||||||||
Sbjct 215435 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 215376
Query 389 GTTTCCCTCTCG 400
||||||||||||
Sbjct 215375 GTTTCCCTCTCG 215364
Score = 167 bits (184), Expect = 5e-39
Identities = 153/192 (80%), Gaps = 6/192 (3%)
Strand=Plus/Minus
Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268
||||||| | || |||| ||||| | |||||| |||| || ||| || |||||||
Sbjct 265689 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 265633
Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328
|||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 265632 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 265573
Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388
| ||| |||||| ||||| ||| | ||||||| ||||||| | ||||||||||
Sbjct 265572 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 265513
Query 389 GTTTCCCTCTCG 400
||||||||||||
Sbjct 265512 GTTTCCCTCTCG 265501
Score = 134 bits (148), Expect = 3e-29
Identities = 113/136 (83%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325
|||||||||||| |||||||||||||| |||||||||| | || |||||||||| |||||
Sbjct 130361 AGTGAGCTATTATGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCT 130420
Query 326 ACGCAACTCC-ACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTG 384
|| ||||| || |||||| ||||||| || ||||||||||||||| |||| |
Sbjct 130421 CTGC-ACTCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTAGTGATTCG 130479
Query 385 GGCTGTTTCCCTCTCG 400
|||| |||||||||||
Sbjct 130480 GGCTATTTCCCTCTCG 130495
>seq3223
Length=16365
Score = 120 bits (132), Expect = 7e-25
Identities = 250/358 (70%), Gaps = 27/358 (8%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGAC 59
||||||||||| ||||||| |||||| || ||||||||| | || ||| |||
Sbjct 569 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCTGTGGATGAACCTTG-- 512
Query 60 CCTGGA---ACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCAT 115
|||| |||||| | | |||| | | |||||| |||| | || ||||||
Sbjct 511 --TGGAGAAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAA 454
Query 116 GCCTGCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTG 173
||| ||||||| || ||| | |||||| | || | ||| ||||| || |
Sbjct 453 GCCAACATTCTCGCTTTCGCTTTG--TCCACCGCTGC-TCGCGCGGGTGCTTC-CCTTTA 398
Query 174 ACACG--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACT 227
| || ||||||||||||| | || ||| | ||||| ||||| | ||| ||
Sbjct 397 AGGCGGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAACTTCGACAGATTGCT 341
Query 228 TAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGT-GAGCTATTACGCACTCTT 286
||| ||||| | ||| |||||| | | || || |||| ||||||||||||||||||
Sbjct 340 TAA-CCCCGTT-CATCTTCGGCGTAAGAGCGCTCGATCAGTTGAGCTATTACGCACTCTT 283
Query 287 TCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTT 344
|||||| |||||||||| | || |||||||||| ||||| ||| | | || ||||||
Sbjct 282 TCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTT 225
>seq1
Length=6409783
Score = 104 bits (114), Expect = 5e-20
Identities = 87/107 (81%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325
|| |||||||||||||||||||||||| |||||||||| | || |||||||||| |||||
Sbjct 696194 AGAGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCT 696135
Query 326 ACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTA 372
||| | | || |||||| ||||||| || ||||||| ||||
Sbjct 696134 CTGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGACTTA 696088
>seq176
Length=1829295
Score = 91.5 bits (100), Expect = 3e-16
Identities = 86/110 (78%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 283 TCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCT 342
||||| || |||||||||||| |||||||| |||||| ||||| || ||||||| |
Sbjct 1318912 TCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGT 1318971
Query 343 TTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTT 392
|||||||| | || |||| ||| ||||||||| |||||| |||||
Sbjct 1318972 TTCCCACTTAACCATGACTTTGGGACCTTAGCTGGCAGTCTGGGTTGTTT 1319021
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177512245248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |