Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq621 125 6e-27 seq400 123 2e-26 seq1 122 7e-26 seq93 118 9e-25 >seq621 Length=738574 Score = 125 bits (138), Expect = 6e-27 Identities = 126/161 (78%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| || ||||||| ||| | ||| ||| ||| ||||||| |||||||| Sbjct 196516 CGAGTTGCAGCCTGCAATCCGAACTGAGGATGGGTTTT-TGGAGTTAGCTCACCCTCGCG 196458 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 || | ||| |||| ||| |||||||| ||||||| |||| |||||||| || Sbjct 196457 GGATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCA 196398 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||||| ||||||||||||| || |||| Sbjct 196397 TGATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 196357 >seq400 Length=1097662 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 192760 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 192818 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 192819 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 192878 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 192879 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 192918 Score = 113 bits (124), Expect = 4e-23 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 135247 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 135306 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| || |||||||| ||| ||| |||| |||||||| ||| Sbjct 135307 GGTCGCGACCCTTGGTCCCGGCCATTGTAGCACGCGTGTCGCCCAGGGCATAAGGGGCAT 135366 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 135367 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 135406 >seq1 Length=6409783 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 692372 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 692313 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 692312 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 692253 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 692252 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 692213 Score = 96.9 bits (106), Expect = 3e-18 Identities = 119/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||| || || ||||||| ||| | ||| ||| ||| ||| ||| ||||||||| Sbjct 691071 GAGTTGTAGCCTGCAATCCGAACTGAGGATGGGTTTT-TGGAGTTAACTCACCCTCGCGG 691013 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| ||||| || | ||||| ||| |||||||| ||| Sbjct 691012 GATTGCGACCCTTTGTCCCGGCCATTATAGCATGTGTGTCACCCAGTGCATAAGGGGCAT 690953 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||||| || |||| Sbjct 690952 GATGACTTGACGTCATCCTCACCTTCCTCCGACTTATCAC 690913 >seq93 Length=2366463 Score = 118 bits (130), Expect = 9e-25 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 2081548 CGAGTTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 2081607 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 2081608 GATCGCGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 2081667 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || ||||||||||||||| ||||||||||||| || Sbjct 2081668 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTT 2081702 Score = 98.7 bits (108), Expect = 8e-19 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGG 62 |||||| || || ||||||| ||| | ||| ||| ||| ||| |||||||||| Sbjct 2079643 GAGTTGTAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAACTCACCCTCGCGGG 2079702 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | ||| |||| ||| ||||| || | ||||| ||| |||||||| |||| Sbjct 2079703 ATTGCGACCCTTTGTCCCGGCCATTATAGCATGTGTGTCACCCAGTGCATAAGGGGCATG 2079762 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||| ||||||||||||| || |||| Sbjct 2079763 ATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 2079801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415969968440