Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq400 167 4e-39 seq93 167 4e-39 seq1 149 1e-33 seq345 127 3e-27 seq65 89.7 9e-16 >seq400 Length=1097662 Score = 167 bits (184), Expect = 4e-39 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 135800 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 135859 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 135860 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 135919 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 ||||||| | || | ||||||||||| | ||| || | ||||| Sbjct 135920 CTTGGCAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 135979 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 135980 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 136039 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 136040 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 136084 Score = 134 bits (148), Expect = 2e-29 Identities = 204/288 (71%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| || ||||||| || |||| | | |||||||| ||| || Sbjct 193662 CCCATGCTTTCGCACCCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 193721 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| | |||||||| ||||||||| |||||| | || || ||| Sbjct 193722 TCCTTCGTAGATCTCTGGATTTCACCCCTACACACGAAATTCCACTCTCCCCTGTCCCAC 193781 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCATAGTTTTCACATCTG 177 ||||| || ||||| | ||| || | | || | | | |||||| | Sbjct 193782 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCA--GTTTTTGGCGAC---TTTCACTTTCA 193836 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 || | | |||||||| ||||||||| |||| | | |||| | ||| |||||| || Sbjct 193837 ACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCC 193896 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 193897 CCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 193944 >seq93 Length=2366463 Score = 167 bits (184), Expect = 4e-39 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| || |||||| |||||||| | Sbjct 2082101 GCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 2082160 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| ||| | |||||| |||| || | | |||| || Sbjct 2082161 CCGATCTCTACGCATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 2082220 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 ||||||| | || | ||||||||||| | ||| || | ||||| Sbjct 2082221 CTTGGCAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTAAAA 2082280 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| |||||| Sbjct 2082281 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTA 2082340 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 2082341 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 2082385 >seq1 Length=6409783 Score = 149 bits (164), Expect = 1e-33 Identities = 204/285 (72%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| || ||| | |||||| || || |||| |||||||| | Sbjct 690519 GCTTTCGTCTCTCAGTGTTAGTGTTGGCCCAGCAGAGTGCTTTTGCCATTGGTGTTCTTT 690460 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || |||||||||||||||||| |||| | |||||| |||| || | | |||| | Sbjct 690459 CCGATCTCTACGCATTTCACCGCTCCACAGGAAATTCCCTCTGCCCCTACCGTACTCTAA 690400 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 ||||||| | || | ||||||||||| | ||| || | ||||| Sbjct 690399 CTTGGCAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTAGGATTTGACGGCGGACTTAAAA 690340 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | ||||||||||||| | ||| |||||||||||| ||| |||||| Sbjct 690339 AGCCACCTACAGACGCTTTACACCCAATCATTCCAGATAACGCTTGCATCCTCTGTATTA 690280 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 | |||||||||||||| ||||||| | ||||||||| ||| || Sbjct 690279 CTGCGGCTGCTGGCACAGAGTTAGCTGATGCTTATTCCCCAGATA 690235 >seq345 Length=1218342 Score = 127 bits (140), Expect = 3e-27 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 69 ATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAA 128 ||| |||||||||||||| || ||| | |||||| ||||| || | | |||| || Sbjct 620960 ATACCTACGCATTTCACCACTCCACCGGAAATTCCCTTTGCCCCTACCGTACTCCAGCTT 621019 Query 129 AACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCC 188 ||||||| | || | ||||||||||| | ||| | | ||||| | Sbjct 621020 GGCAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGATGGCGGACTTAAAAAGC 621079 Query 189 CGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCG 248 | |||||| | |||||| |||||| | |||||||||||||||| ||| ||||||||| Sbjct 621080 CACCTACAGACGCTTTACTCCCAATCATTCCGGATAACGCTTGCATCCTCTGTATTACCG 621139 Query 249 CGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 |||||||||||| ||||||||| ||||||||| Sbjct 621140 TGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 621174 >seq65 Length=2714061 Score = 89.7 bits (98), Expect = 9e-16 Identities = 165/241 (68%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 47 TTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGAT 106 |||| | |||||||| | || ||||||||||||| |||| ||| |||||| Sbjct 626435 TTCGTCGTTGGTGTTCTTTTTGATCTCTACGCATTTCATCGCTCCACCAAAAATTCCTTA 626376 Query 107 TGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGG-CTATGGGTTGAGCCCATAG 165 |||| | | |||| || ||||||| | || | ||| |||||||||| | Sbjct 626375 TGCCCTTACCATACTCCAGCTTGGCAGTTTCCACCGCCTGTCTAGGGGTTGAGCCTTAGG 626316 Query 166 TTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAA 225 ||| ||| ||||| || |||||| ||||| |||||| | || ||||| Sbjct 626315 ATTTGACAGTGGACTTAAAAAGCCACCTACATATGCTTTAAGCCCAATCATTCTAGATAA 626256 Query 226 CGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 | ||||| ||| |||||||| ||||||||||||| ||||| | | ||||||||| | Sbjct 626255 CACTTGCATCCTTTATATTACCGTGGCTGCTGGCACGGAGTTAACTGATGCTTATTCCCC 626196 Query 286 A 286 | Sbjct 626195 A 626195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828740167892