Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq432 268 1e-69 seq239 268 1e-69 seq404 215 8e-54 seq400 201 2e-49 seq1 98.7 2e-18 >seq432 Length=1036175 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 789578 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 789637 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 789638 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 789697 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 789698 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 789757 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 789758 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 789817 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 789818 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 789850 >seq239 Length=1496907 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 1066486 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 1066427 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 1066426 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 1066367 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 1066366 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 1066307 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 1066306 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 1066247 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 1066246 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 1066214 >seq404 Length=1096556 Score = 215 bits (238), Expect = 8e-54 Identities = 213/273 (78%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||| |||| | |||||| ||| |||| ||| |||||| Sbjct 528636 GGTGGGCTTACTACTTAGATAATTTCAACAGTTATCCGCTCCGCACTTGGCTACCCAGCG 528695 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| || |||||| |||| |||| ||||||||||||| Sbjct 528696 TTTACCGTGGGCAC-ATAACTGGTACATTAGAGGTGCGTCCTTCCCAGTCCTCTCGTACT 528754 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 ||||| || ||||||||| || |||||||| |||||| |||||||||| |||| || Sbjct 528755 AAGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTATCTCACG 528814 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 || |||| |||||||||| ||| || |||||||||| |||| ||||||||||||| || | Sbjct 528815 ACATTCTAAACCCAGCTCACGTACCGCTTTAATGGGAGAACTGCCCAACCCTTGGAACAT 528874 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||| | | || |||||||||||| Sbjct 528875 ACTACAGCCCCAAGTGGCGAAGAGCCGACATCG 528907 >seq400 Length=1097662 Score = 201 bits (222), Expect = 2e-49 Identities = 209/273 (77%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||| | || ||| |||||| || |||| ||| ||||| Sbjct 128703 GGTGGGCTTACTACTTAGATTCTTTTAGCAGTTATCCGCTCTGCACTTGGCTACCCAGTG 128762 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| || ||||||||||||||| Sbjct 128763 TTTACCGTGGGCATGATAACTGGTACACCAGAGGTGCGTCCTTCTCGGTCCTCTCGTACT 128822 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || || ||||| | |||| ||||| ||||||||| || Sbjct 128823 AGGGAAAGGTCCTCTCAATGCTCTAACACCCACACCAGATATGGACCAAACTGTCTCACG 128882 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 | ||| ||||||||||| ||| || ||| ||||||| || |||||||||||||| || | Sbjct 128883 ATGTTTTGAACCCAGCTTACGTACCGCTTGAATGGGCAAATAGCCCAACCCTTGGAACAT 128942 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||| | | || |||||||||||| Sbjct 128943 ACTACAGCCCCAAGTGGTGAAGAGCCGACATCG 128975 Score = 196 bits (216), Expect = 8e-48 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| || ||| ||||| ||| | Sbjct 217160 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTAGCATAACAACCGGTAC 217101 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 217100 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 217041 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 217040 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 216981 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 216980 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 216921 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 216920 AGTCGACATCG 216910 Score = 190 bits (210), Expect = 3e-46 Identities = 193/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| || ||| ||||| ||| | Sbjct 267297 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTAGCATAACAACCGGTAC 267238 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 267237 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 267178 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 267177 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 267118 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || ||||| |||||||| ||||| |||||||||| || | Sbjct 267117 ACCACTTGAATCGGCGAACAACCGAACCCCTGGGACCTTCTTCAACCCCAGGATGTGATG 267058 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 267057 AGTCGACATCG 267047 >seq1 Length=6409783 Score = 98.7 bits (108), Expect = 2e-18 Identities = 119/161 (74%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 721475 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCTCACTTGGCTACCCAGCG 721534 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | |||| || ||||||| |||| |||||||||||||||||| Sbjct 721535 TTTACCGTGGGCACGATAACTAGTACACCAGAAAAGCGTCCTTCCCGGTCCTCTCGTACT 721594 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATA 163 | ||| || ||||||||| || |||||||| || ||| Sbjct 721595 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGAATA 721635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780743633072