Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01]
7,452 sequences; 1,373,365,927 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq1 206 7e-51
seq345 201 3e-49
seq400 183 7e-44
seq93 179 9e-43
seq887 96.9 8e-18
seq26 95.1 3e-17
seq65 87.8 4e-15
>seq1
Length=6409783
Score = 206 bits (228), Expect = 7e-51
Identities = 289/404 (72%), Gaps = 30/404 (7%)
Strand=Plus/Minus
Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70
||||| ||||||||| | | || | ||||| ||| | | || ||| ||||||||||| ||
Sbjct 690198 ACCCGTAGGCCTTCTGCCTCCAAGAGGCATTGCTCCGTTAGACTTTCGCCCATTGTGAAA 690139
Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130
||||||||||||||||||||||||||| ||| | |||||||||| ||||||||||||
Sbjct 690138 AATTCCCCACTGCTGCCTCCCGTAGGAGCGTGGGCTGTGTCTCAGTCCCAGTGTGGCTGA 690079
Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190
|||||||||||||||||||| |||| ||| || ||| || ||| || | | |||||||
Sbjct 690078 TCATCCTCTCAGACCAGCTACTGATCATCGTCTTGGTAAGCTATTGCCTCACTAACTAGC 690019
Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250
||||| | | | | ||| || | || ||| ||| |||| || |
Sbjct 690018 TAATCAGACGCGAGCCCCTCC----TTGGGTGG------ATTCCTCCT-TTTGCTCCTCA 689970
Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310
| | || | ||||||| | | ||||| ||| || | ||||||| ||||| |||
Sbjct 689969 GCC--TACGGGGTATTAACAATCGTTTTCAGCTATTGTTCCCCTCCCAATGGCAGGTTCT 689912
Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370
| | |||||||||| ||| ||||| ||| || || |||| |||
Sbjct 689911 TATGCGTTACTCACCCATCCACCACT------GGAAACACCA-----CTTC------CCG 689869
Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
| |||||||||||||||| || |||||| ||| |||| |||||
Sbjct 689868 TCCGACTTGCATGTGTTAAGCATGCCGCTAGCATTCATCCTGAG 689825
>seq345
Length=1218342
Score = 201 bits (222), Expect = 3e-49
Identities = 159/191 (83%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| ||||||||| | |||||||||| ||| | | | |||| | ||||||
Sbjct 621212 TTCACGACCCGTAGGCCTTCTATCTCCACGCGGCATTGCTCCGTTAAGCTTTCACCCATT 621271
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct 621272 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCTAGTGT 621331
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | |||
Sbjct 621332 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 621391
Query 185 ACTAGCTAATC 195
|||||||||||
Sbjct 621392 ACTAGCTAATC 621402
>seq400
Length=1097662
Score = 183 bits (202), Expect = 7e-44
Identities = 127/144 (88%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||
Sbjct 136115 TTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 136174
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 136175 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 136234
Query 125 GGCTGGTCATCCTCTCAGACCAGC 148
||||| |||||||||| |||||||
Sbjct 136235 GGCTGATCATCCTCTCGGACCAGC 136258
Score = 170 bits (188), Expect = 5e-40
Identities = 154/193 (80%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61
|||||||| | | | | ||||||||| |||||| || |||| ||| ||||| |||||
Sbjct 193979 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 194038
Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121
||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| ||||
Sbjct 194039 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 194098
Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181
|||||||| |||||| |||||||||| | ||| | | || ||| ||| |||||
Sbjct 194099 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 194158
Query 182 CCAACTAGCTAAT 194
||||||| |||||
Sbjct 194159 CCAACTACCTAAT 194171
Score = 168 bits (186), Expect = 2e-39
Identities = 119/136 (88%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 60 CCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 119
|||||| | || |||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 136258 CCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCC 136317
Query 120 AGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCC 179
|||||||||| |||||||||| ||||||||| |||| |||||| ||| || ||| ||
Sbjct 136318 AGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCT 136377
Query 180 CGCCAACTAGCTAATC 195
| ||||||||||||||
Sbjct 136378 CACCAACTAGCTAATC 136393
>seq93
Length=2366463
Score = 179 bits (198), Expect = 9e-43
Identities = 237/327 (72%), Gaps = 30/327 (9%)
Strand=Plus/Plus
Query 88 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 147
|||||||||||||||| |||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 2082499 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAG 2082558
Query 148 CTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTC 207
||| |||| |||||| ||| || ||| || | |||||||||||||| | | | |
Sbjct 2082559 CTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCC 2082618
Query 208 ATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTA 267
||| || | || ||| ||| |||| || | | | || | |||||||
Sbjct 2082619 CTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCAGCC--TACGGGGTATTA 2082665
Query 268 GCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCG 327
|| |||||||||| ||| | ||||||| ||||| ||| | | |||||||||||
Sbjct 2082666 GCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 2082725
Query 328 TCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTT 387
||||||||| ||| || || |||| |||| |||||||||||||||
Sbjct 2082726 TCCGCCACT------GGAAACACCA-----CTTC------CCGTCCGACTTGCATGTGTT 2082768
Query 388 AGGCCTGCCGCCAGCGTTCAATCTGAG 414
| || ||||||||||||||| |||||
Sbjct 2082769 AAGCATGCCGCCAGCGTTCATCCTGAG 2082795
>seq887
Length=435773
Score = 96.9 bits (106), Expect = 8e-18
Identities = 80/98 (82%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 97 AGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATC 156
||||||| |||||||||||| ||| |||||||| ||||||| |||||||||||| | ||
Sbjct 432384 AGTCTGGGCCGTGTCTCAGTCCCATTGTGGCTGATCATCCTTTCAGACCAGCTACTGGTC 432325
Query 157 GTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194
| |||| ||| || ||| || |||||||||||||
Sbjct 432324 ATTGCCTTGGTAAGCTATTGCCTTACCAACTAGCTAAT 432287
>seq26
Length=3464815
Score = 95.1 bits (104), Expect = 3e-17
Identities = 82/102 (80%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107
|||||||| | ||||||| || |||| | ||||||||||| ||||| ||||| | |||
Sbjct 3215753 TCAGGCTTTCACCCATTGCAAAAAATTCTCTACTGCTGCCTCTCGTAGAAGTCTAGGCCG 3215694
Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCT 149
| ||||||| |||| ||| || |||||||||| ||||| ||
Sbjct 3215693 TATCTCAGTCTCAGTATGGTTGATCATCCTCTCTGACCATCT 3215652
>seq65
Length=2714061
Score = 87.8 bits (96), Expect = 4e-15
Identities = 83/105 (79%), Gaps = 1/105 (1%)
Strand=Plus/Minus
Query 36 GGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 95
||||| || ||||||||| |||||||| || |||| |||||||| || | | |||
Sbjct 626129 GGCATTACTCTATCAGGCTTTTGCCCATTGCATAAAATTCTCCACTGCTACCACTCATAG 626070
Query 96 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140
|||||| | | |||||| ||| |||||||||||| ||||| ||||
Sbjct 626069 GAGTCTAGGCTGTGTCTTAGT-CCAGTGTGGCTGATCATCATCTC 626026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222308906752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |