Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1 206 7e-51 seq345 201 3e-49 seq400 183 7e-44 seq93 179 9e-43 seq887 96.9 8e-18 seq26 95.1 3e-17 seq65 87.8 4e-15 >seq1 Length=6409783 Score = 206 bits (228), Expect = 7e-51 Identities = 289/404 (72%), Gaps = 30/404 (7%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | || | ||||| ||| | | || ||| ||||||||||| || Sbjct 690198 ACCCGTAGGCCTTCTGCCTCCAAGAGGCATTGCTCCGTTAGACTTTCGCCCATTGTGAAA 690139 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 ||||||||||||||||||||||||||| ||| | |||||||||| |||||||||||| Sbjct 690138 AATTCCCCACTGCTGCCTCCCGTAGGAGCGTGGGCTGTGTCTCAGTCCCAGTGTGGCTGA 690079 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||||||||||||| |||| ||| || ||| || ||| || | | ||||||| Sbjct 690078 TCATCCTCTCAGACCAGCTACTGATCATCGTCTTGGTAAGCTATTGCCTCACTAACTAGC 690019 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| || | || ||| ||| |||| || | Sbjct 690018 TAATCAGACGCGAGCCCCTCC----TTGGGTGG------ATTCCTCCT-TTTGCTCCTCA 689970 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | || | ||||||| | | ||||| ||| || | ||||||| ||||| ||| Sbjct 689969 GCC--TACGGGGTATTAACAATCGTTTTCAGCTATTGTTCCCCTCCCAATGGCAGGTTCT 689912 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||| ||| ||||| ||| || || |||| ||| Sbjct 689911 TATGCGTTACTCACCCATCCACCACT------GGAAACACCA-----CTTC------CCG 689869 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||| || |||||| ||| |||| ||||| Sbjct 689868 TCCGACTTGCATGTGTTAAGCATGCCGCTAGCATTCATCCTGAG 689825 >seq345 Length=1218342 Score = 201 bits (222), Expect = 3e-49 Identities = 159/191 (83%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||||| | |||||||||| ||| | | | |||| | |||||| Sbjct 621212 TTCACGACCCGTAGGCCTTCTATCTCCACGCGGCATTGCTCCGTTAAGCTTTCACCCATT 621271 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct 621272 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCTAGTGT 621331 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 621332 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 621391 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 621392 ACTAGCTAATC 621402 >seq400 Length=1097662 Score = 183 bits (202), Expect = 7e-44 Identities = 127/144 (88%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| ||||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 136115 TTCACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 136174 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 136175 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 136234 Query 125 GGCTGGTCATCCTCTCAGACCAGC 148 ||||| |||||||||| ||||||| Sbjct 136235 GGCTGATCATCCTCTCGGACCAGC 136258 Score = 170 bits (188), Expect = 5e-40 Identities = 154/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 193979 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 194038 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 194039 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 194098 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 194099 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 194158 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 194159 CCAACTACCTAAT 194171 Score = 168 bits (186), Expect = 2e-39 Identities = 119/136 (88%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 60 CCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 119 |||||| | || |||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 136258 CCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCC 136317 Query 120 AGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCC 179 |||||||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || Sbjct 136318 AGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCT 136377 Query 180 CGCCAACTAGCTAATC 195 | |||||||||||||| Sbjct 136378 CACCAACTAGCTAATC 136393 >seq93 Length=2366463 Score = 179 bits (198), Expect = 9e-43 Identities = 237/327 (72%), Gaps = 30/327 (9%) Strand=Plus/Plus Query 88 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 147 |||||||||||||||| |||||||||||| |||||||||||| |||||||||| |||||| Sbjct 2082499 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAG 2082558 Query 148 CTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTC 207 ||| |||| |||||| ||| || ||| || | |||||||||||||| | | | | Sbjct 2082559 CTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCC 2082618 Query 208 ATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTA 267 ||| || | || ||| ||| |||| || | | | || | ||||||| Sbjct 2082619 CTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTCAGCC--TACGGGGTATTA 2082665 Query 268 GCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCG 327 || |||||||||| ||| | ||||||| ||||| ||| | | ||||||||||| Sbjct 2082666 GCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 2082725 Query 328 TCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTT 387 ||||||||| ||| || || |||| |||| ||||||||||||||| Sbjct 2082726 TCCGCCACT------GGAAACACCA-----CTTC------CCGTCCGACTTGCATGTGTT 2082768 Query 388 AGGCCTGCCGCCAGCGTTCAATCTGAG 414 | || ||||||||||||||| ||||| Sbjct 2082769 AAGCATGCCGCCAGCGTTCATCCTGAG 2082795 >seq887 Length=435773 Score = 96.9 bits (106), Expect = 8e-18 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 97 AGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATC 156 ||||||| |||||||||||| ||| |||||||| ||||||| |||||||||||| | || Sbjct 432384 AGTCTGGGCCGTGTCTCAGTCCCATTGTGGCTGATCATCCTTTCAGACCAGCTACTGGTC 432325 Query 157 GTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 | |||| ||| || ||| || ||||||||||||| Sbjct 432324 ATTGCCTTGGTAAGCTATTGCCTTACCAACTAGCTAAT 432287 >seq26 Length=3464815 Score = 95.1 bits (104), Expect = 3e-17 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 48 TCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 107 |||||||| | ||||||| || |||| | ||||||||||| ||||| ||||| | ||| Sbjct 3215753 TCAGGCTTTCACCCATTGCAAAAAATTCTCTACTGCTGCCTCTCGTAGAAGTCTAGGCCG 3215694 Query 108 TGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCT 149 | ||||||| |||| ||| || |||||||||| ||||| || Sbjct 3215693 TATCTCAGTCTCAGTATGGTTGATCATCCTCTCTGACCATCT 3215652 >seq65 Length=2714061 Score = 87.8 bits (96), Expect = 4e-15 Identities = 83/105 (79%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 36 GGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 95 ||||| || ||||||||| |||||||| || |||| |||||||| || | | ||| Sbjct 626129 GGCATTACTCTATCAGGCTTTTGCCCATTGCATAAAATTCTCCACTGCTACCACTCATAG 626070 Query 96 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140 |||||| | | |||||| ||| |||||||||||| ||||| |||| Sbjct 626069 GAGTCTAGGCTGTGTCTTAGT-CCAGTGTGGCTGATCATCATCTC 626026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222308906752