Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq345 309 9e-82 seq1 284 4e-74 seq400 269 8e-70 seq93 226 9e-57 seq65 150 5e-34 seq887 109 2e-21 seq26 75.2 3e-11 >seq345 Length=1218342 Score = 309 bits (342), Expect = 9e-82 Identities = 278/344 (81%), Gaps = 5/344 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 621409 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 621350 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| | | |||||||||||| ||| ||||||||||||||||| Sbjct 621349 CCGAGAGGATGATCAGCCACACTAGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 621290 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT-G 338 ||||||||||| || | ||||||| ||||| | | | ||||| |||||||| | ||| | Sbjct 621289 CAGTGGGGAATTTTCCGCAATGGGTGAAAGCTTAACGGAGCAATGCCGCGTG-GAGATAG 621231 Query 339 AAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAG 396 ||||||| |||||||| || ||| | ||| ||||| |||||||||| | ||| Sbjct 621230 AAGGCCTACGGGTCGTGAACTTCTTTTCTCGGAGAAGAAGCAATGACGGTATCTAGGGAA 621171 Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 |||| ||||||||| |||||||||||| ||||||||| ||| || |||||||||| Sbjct 621170 TAAGCATCGGCTAACTCTGTGCCAGCAGCCACGGTAATACAGAGGATGCAAGCGTTATCC 621111 Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||| | | ||| |||||| || |||||||| || ||||||| Sbjct 621110 GGAATGA-TTGGGAGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 621068 >seq1 Length=6409783 Score = 284 bits (314), Expect = 4e-74 Identities = 270/343 (79%), Gaps = 3/343 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||||||||||||||||| || ||| || |||||||||| ||| |||||||||| | Sbjct 690007 CGCGTCTGATTAGCTAGTTAGTGAGGCAATAGCTTACCAAGACGATGATCAGTAGCTGGT 690066 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| ||||| |||||| ||| |||||||||| | ||| |||||||||||||||| Sbjct 690067 CTGAGAGGATGATCAGCCACACTGGGACTGAGACACAGCCCACGCTCCTACGGGAGGCAG 690126 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || |||||||||| |||| || | | ||||| ||| | || | || Sbjct 690127 CAGTGGGGAATTTTTCACAATGGGCGAAAGTCTAACGGAGCAATGCCTCTTGGAGGCAGA 690186 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 |||||| |||||| | || ||| | | | ||||| |||||||||| || ||| Sbjct 690187 AGGCCTACGGGTCATGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAAT 690246 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| | ||||||| |||||||||||||| ||||||| ||| || ||||||||| | Sbjct 690247 AAGCATCAGCTAACTCTGTGCCAGCAGCCGCAGTAATACAGAGGATGCAAGCGTTATCTG 690306 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | ||| |||||| || |||||||| || ||||||| Sbjct 690307 GAATGA-TTGGGTGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 690348 >seq400 Length=1097662 Score = 269 bits (298), Expect = 8e-70 Identities = 258/327 (79%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 194171 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 194112 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 194111 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 194052 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 194051 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 193992 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 193991 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 193932 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 193931 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 193872 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || |||||||||||| |||||| ||| Sbjct 193871 CT-GGGCGTAAAGGGCACGTAGGCGGT 193846 Score = 260 bits (288), Expect = 4e-67 Identities = 229/282 (81%), Gaps = 5/282 (2%) Strand=Plus/Minus Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||||| Sbjct 136250 GAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCA 136191 Query 282 GTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAG 341 ||||||||| || | |||||||| ||||||||| | ||||| |||||||| | |||| Sbjct 136190 GTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAAG 136131 Query 342 GCCTTCGGGTCGTAAAGCTCTGTCCTC---AAGGAAGATAATGACGGTACTTGAGGAGGA 398 |||| |||||||| || ||| | | | || |||| |||||||||| || ||| | Sbjct 136130 GCCTACGGGTCGTGAACTTCTTTTCCCGGAAAAGAAG-CAATGACGGTATCTGGGGAATA 136072 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 ||| ||||||||| |||||||||||||||||||||| ||| || |||||||||||| Sbjct 136071 AGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGG 136012 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| | | |||||||||| || |||||||| || ||||||| Sbjct 136011 AATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 135971 Score = 178 bits (196), Expect = 4e-42 Identities = 125/143 (87%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 136400 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 136341 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 136340 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 136281 Query 280 CAGTGGGGAATATTGCACAATGG 302 ||||||||||| || | |||||| Sbjct 136280 CAGTGGGGAATTTTCCGCAATGG 136258 Score = 129 bits (142), Expect = 2e-27 Identities = 148/198 (75%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||| | ||||||| |||||||| ||| || |||||| |||| || |||| ||| | Sbjct 429117 CGCATTTGATTAGTTAGTTGGTGAGGCAATAGCTTACGAAGGTGATGATCGGTACTTGGT 429176 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | | ||| || ||||||||||| |||||||| | | ||||||| |||||||| Sbjct 429177 CCAACAGGATGGCTAGCCACATTGGAT-TGAGACACAGCTTAGACTCCTATAGGAGGCAG 429235 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 || |||||||| || |||||||||||||||||||||| |||| || || || | | | Sbjct 429236 CAATGGGGAATTTTCCACAATGGGCAAAAGCCTGATGGGGCAATGCTGCATGGGGGTAAA 429295 Query 340 AGGCCTTCGGGTCGTAAA 357 |||||| |||| || || Sbjct 429296 AGGCCTATGGGTTGTGAA 429313 >seq93 Length=2366463 Score = 226 bits (250), Expect = 9e-57 Identities = 263/347 (76%), Gaps = 11/347 (3%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | Sbjct 2082613 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 2082554 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGA--GGC 277 | |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||| | | Sbjct 2082553 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGACCGTC 2082494 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGC-CTGATGCAGCAACGCCGCGTGAGCGA 336 || || | || | || | |||| |||||| |||||||| | Sbjct 2082493 GTCACCCCTTAAAAG-GCGTTACCCGCTTTCGGACTGA--CAGCAATGCCGCGTGGAGGT 2082437 Query 337 TGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTC---AAGGAAGATAATGACGGTACTTGAG 393 |||||||| |||||||| || ||| | | | || |||| |||||||||| || | Sbjct 2082436 AGAAGGCCTACGGGTCGTGAACTTCTTTTCCCGGAAAAGAAGC-AATGACGGTATCTGGG 2082378 Query 394 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 453 || |||| ||||||||| |||||||||||||||||||||| ||| || ||||||| Sbjct 2082377 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTA 2082318 Query 454 TCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||| | | |||||||||| || |||||||| || ||||||| Sbjct 2082317 TCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 2082272 >seq65 Length=2714061 Score = 150 bits (166), Expect = 5e-34 Identities = 213/296 (72%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 207 ATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTC 266 ||||||||| | |||| | ||||| |||||| |||| || |||||| | | | |||| Sbjct 626011 ATCAGTAGCTAGCTCGAGATGATGATCAGCCACACTGGA-CTAAGACACAGCCTAGACTC 626069 Query 267 CTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCC 326 ||| | | || |||||||| |||| || ||||||||||||||||||| || || ||| Sbjct 626070 CTATGAGTGGTAGCAGTGGAGAATTTTATGCAATGGGCAAAAGCCTGATAGAGTAATGCC 626129 Query 327 GCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACG 384 | | | |||||| | || ||| | || ||| | |||| |||| ||||| Sbjct 626130 ATATAAAGGTAGAAGGCTTGCGAGTCATGAACTTCTTTTCTCATAAAAGAAGCAATGAAA 626189 Query 385 GTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 444 ||| || ||| |||| | | ||||| ||||||||||||| |||||||| ||| | Sbjct 626190 GTATGTGGGGAATAAGCATCAGTTAACTCCGTGCCAGCAGCCACGGTAATATAAAGGATG 626249 Query 445 CTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | || |||||| |||| | | |||| ||||| | |||||||| || ||||||| Sbjct 626250 CAAGTGTTATCTAGAATGA-TTGGGCTTAAAGCATATGTAGGTGGCTTTTTAAGTC 626304 >seq887 Length=435773 Score = 109 bits (120), Expect = 2e-21 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 || ||| |||||||||||||||||| || |||||||||||| | || ||||||| | | Sbjct 432280 GCATCTAATTAGCTAGTTGGTAAGGCAATAGCTTACCAAGGCAATGACCAGTAGCTGGTC 432339 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACT 265 ||| ||| ||||| |||||| ||| |||||||||||| ||| ||| Sbjct 432340 TGAAAGGATGATCAGCCACAATGGGACTGAGACACGGCCCAGACT 432384 >seq26 Length=3464815 Score = 75.2 bits (82), Expect = 3e-11 Identities = 95/130 (73%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 193 TTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGA 252 ||||||| || | |||||| | | |||||| ||||| ||| | || ||||||| Sbjct 3215635 TTACCAAAGCAATGATCAGATGGTCA---GAGAGGATGATCAACCATACTGAGACTGAGA 3215691 Query 253 CACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCT 312 |||| | | ||| ||||| ||||||||||| | |||| || ||||||| ||||||| Sbjct 3215692 TACGGCCTAGACTTCTACGAGAGGCAGCAGTAGAGAATTTTTTGCAATGGGTGAAAGCCT 3215751 Query 313 GATGCAGCAA 322 || ||||| Sbjct 3215752 GACAGAGCAA 3215761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497488398848