Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01]
7,452 sequences; 1,373,365,927 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq345 309 9e-82
seq1 284 4e-74
seq400 269 8e-70
seq93 226 9e-57
seq65 150 5e-34
seq887 109 2e-21
seq26 75.2 3e-11
>seq345
Length=1218342
Score = 309 bits (342), Expect = 9e-82
Identities = 278/344 (81%), Gaps = 5/344 (1%)
Strand=Plus/Minus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| ||| || |||||||||||||| |||||||||| |
Sbjct 621409 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 621350
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||| ||||| |||||| | | |||||||||||| ||| |||||||||||||||||
Sbjct 621349 CCGAGAGGATGATCAGCCACACTAGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 621290
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT-G 338
||||||||||| || | ||||||| ||||| | | | ||||| |||||||| | ||| |
Sbjct 621289 CAGTGGGGAATTTTCCGCAATGGGTGAAAGCTTAACGGAGCAATGCCGCGTG-GAGATAG 621231
Query 339 AAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAG 396
||||||| |||||||| || ||| | ||| ||||| |||||||||| | |||
Sbjct 621230 AAGGCCTACGGGTCGTGAACTTCTTTTCTCGGAGAAGAAGCAATGACGGTATCTAGGGAA 621171
Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456
|||| ||||||||| |||||||||||| ||||||||| ||| || ||||||||||
Sbjct 621170 TAAGCATCGGCTAACTCTGTGCCAGCAGCCACGGTAATACAGAGGATGCAAGCGTTATCC 621111
Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
||||| | | ||| |||||| || |||||||| || |||||||
Sbjct 621110 GGAATGA-TTGGGAGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 621068
>seq1
Length=6409783
Score = 284 bits (314), Expect = 4e-74
Identities = 270/343 (79%), Gaps = 3/343 (1%)
Strand=Plus/Plus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
||||||||||||||||||| || ||| || |||||||||| ||| |||||||||| |
Sbjct 690007 CGCGTCTGATTAGCTAGTTAGTGAGGCAATAGCTTACCAAGACGATGATCAGTAGCTGGT 690066
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
|||||||| ||||| |||||| ||| |||||||||| | ||| ||||||||||||||||
Sbjct 690067 CTGAGAGGATGATCAGCCACACTGGGACTGAGACACAGCCCACGCTCCTACGGGAGGCAG 690126
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||||||||| || |||||||||| |||| || | | ||||| ||| | || | ||
Sbjct 690127 CAGTGGGGAATTTTTCACAATGGGCGAAAGTCTAACGGAGCAATGCCTCTTGGAGGCAGA 690186
Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397
|||||| |||||| | || ||| | | | ||||| |||||||||| || |||
Sbjct 690187 AGGCCTACGGGTCATGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAAT 690246
Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457
|||| | ||||||| |||||||||||||| ||||||| ||| || ||||||||| |
Sbjct 690247 AAGCATCAGCTAACTCTGTGCCAGCAGCCGCAGTAATACAGAGGATGCAAGCGTTATCTG 690306
Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||| | | ||| |||||| || |||||||| || |||||||
Sbjct 690307 GAATGA-TTGGGTGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 690348
>seq400
Length=1097662
Score = 269 bits (298), Expect = 8e-70
Identities = 258/327 (79%), Gaps = 5/327 (2%)
Strand=Plus/Minus
Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227
||||| |||||||| |||||| |||| |||||| | | ||| |||| | || ||
Sbjct 194171 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 194112
Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287
||||| |||||| ||| |||||||||||| || ||||| ||||| |||||||||||||
Sbjct 194111 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 194052
Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345
||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | |
Sbjct 194051 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 193992
Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403
| | | |||||||||| || || | | ||| ||||| | ||| ||||| |||||||
Sbjct 193991 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 193932
Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463
||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| |
Sbjct 193931 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 193872
Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490
|| |||||||||||| |||||| |||
Sbjct 193871 CT-GGGCGTAAAGGGCACGTAGGCGGT 193846
Score = 260 bits (288), Expect = 4e-67
Identities = 229/282 (81%), Gaps = 5/282 (2%)
Strand=Plus/Minus
Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281
|||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||||
Sbjct 136250 GAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCA 136191
Query 282 GTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAG 341
||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||||
Sbjct 136190 GTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAAG 136131
Query 342 GCCTTCGGGTCGTAAAGCTCTGTCCTC---AAGGAAGATAATGACGGTACTTGAGGAGGA 398
|||| |||||||| || ||| | | | || |||| |||||||||| || ||| |
Sbjct 136130 GCCTACGGGTCGTGAACTTCTTTTCCCGGAAAAGAAG-CAATGACGGTATCTGGGGAATA 136072
Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458
||| ||||||||| |||||||||||||||||||||| ||| || ||||||||||||
Sbjct 136071 AGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTATCCGG 136012
Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
||| | | |||||||||| || |||||||| || |||||||
Sbjct 136011 AATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 135971
Score = 178 bits (196), Expect = 4e-42
Identities = 125/143 (87%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| ||| || |||||||||||||| |||||||||| |
Sbjct 136400 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 136341
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||
Sbjct 136340 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 136281
Query 280 CAGTGGGGAATATTGCACAATGG 302
||||||||||| || | ||||||
Sbjct 136280 CAGTGGGGAATTTTCCGCAATGG 136258
Score = 129 bits (142), Expect = 2e-27
Identities = 148/198 (75%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
||| | ||||||| |||||||| ||| || |||||| |||| || |||| ||| |
Sbjct 429117 CGCATTTGATTAGTTAGTTGGTGAGGCAATAGCTTACGAAGGTGATGATCGGTACTTGGT 429176
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| | ||| || ||||||||||| |||||||| | | ||||||| ||||||||
Sbjct 429177 CCAACAGGATGGCTAGCCACATTGGAT-TGAGACACAGCTTAGACTCCTATAGGAGGCAG 429235
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
|| |||||||| || |||||||||||||||||||||| |||| || || || | | |
Sbjct 429236 CAATGGGGAATTTTCCACAATGGGCAAAAGCCTGATGGGGCAATGCTGCATGGGGGTAAA 429295
Query 340 AGGCCTTCGGGTCGTAAA 357
|||||| |||| || ||
Sbjct 429296 AGGCCTATGGGTTGTGAA 429313
>seq93
Length=2366463
Score = 226 bits (250), Expect = 9e-57
Identities = 263/347 (76%), Gaps = 11/347 (3%)
Strand=Plus/Minus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| ||| || |||||||||||||| |||||||||| |
Sbjct 2082613 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT 2082554
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGA--GGC 277
| |||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||| | |
Sbjct 2082553 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGACCGTC 2082494
Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGC-CTGATGCAGCAACGCCGCGTGAGCGA 336
|| || | || | || | |||| |||||| |||||||| |
Sbjct 2082493 GTCACCCCTTAAAAG-GCGTTACCCGCTTTCGGACTGA--CAGCAATGCCGCGTGGAGGT 2082437
Query 337 TGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTC---AAGGAAGATAATGACGGTACTTGAG 393
|||||||| |||||||| || ||| | | | || |||| |||||||||| || |
Sbjct 2082436 AGAAGGCCTACGGGTCGTGAACTTCTTTTCCCGGAAAAGAAGC-AATGACGGTATCTGGG 2082378
Query 394 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 453
|| |||| ||||||||| |||||||||||||||||||||| ||| || |||||||
Sbjct 2082377 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTA 2082318
Query 454 TCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||||||| | | |||||||||| || |||||||| || |||||||
Sbjct 2082317 TCCGGAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 2082272
>seq65
Length=2714061
Score = 150 bits (166), Expect = 5e-34
Identities = 213/296 (72%), Gaps = 4/296 (1%)
Strand=Plus/Plus
Query 207 ATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTC 266
||||||||| | |||| | ||||| |||||| |||| || |||||| | | | ||||
Sbjct 626011 ATCAGTAGCTAGCTCGAGATGATGATCAGCCACACTGGA-CTAAGACACAGCCTAGACTC 626069
Query 267 CTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCC 326
||| | | || |||||||| |||| || ||||||||||||||||||| || || |||
Sbjct 626070 CTATGAGTGGTAGCAGTGGAGAATTTTATGCAATGGGCAAAAGCCTGATAGAGTAATGCC 626129
Query 327 GCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACG 384
| | | |||||| | || ||| | || ||| | |||| |||| |||||
Sbjct 626130 ATATAAAGGTAGAAGGCTTGCGAGTCATGAACTTCTTTTCTCATAAAAGAAGCAATGAAA 626189
Query 385 GTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 444
||| || ||| |||| | | ||||| ||||||||||||| |||||||| ||| |
Sbjct 626190 GTATGTGGGGAATAAGCATCAGTTAACTCCGTGCCAGCAGCCACGGTAATATAAAGGATG 626249
Query 445 CTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
| || |||||| |||| | | |||| ||||| | |||||||| || |||||||
Sbjct 626250 CAAGTGTTATCTAGAATGA-TTGGGCTTAAAGCATATGTAGGTGGCTTTTTAAGTC 626304
>seq887
Length=435773
Score = 109 bits (120), Expect = 2e-21
Identities = 87/105 (83%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220
|| ||| |||||||||||||||||| || |||||||||||| | || ||||||| | |
Sbjct 432280 GCATCTAATTAGCTAGTTGGTAAGGCAATAGCTTACCAAGGCAATGACCAGTAGCTGGTC 432339
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACT 265
||| ||| ||||| |||||| ||| |||||||||||| ||| |||
Sbjct 432340 TGAAAGGATGATCAGCCACAATGGGACTGAGACACGGCCCAGACT 432384
>seq26
Length=3464815
Score = 75.2 bits (82), Expect = 3e-11
Identities = 95/130 (73%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 193 TTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGA 252
||||||| || | |||||| | | |||||| ||||| ||| | || |||||||
Sbjct 3215635 TTACCAAAGCAATGATCAGATGGTCA---GAGAGGATGATCAACCATACTGAGACTGAGA 3215691
Query 253 CACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCT 312
|||| | | ||| ||||| ||||||||||| | |||| || ||||||| |||||||
Sbjct 3215692 TACGGCCTAGACTTCTACGAGAGGCAGCAGTAGAGAATTTTTTGCAATGGGTGAAAGCCT 3215751
Query 313 GATGCAGCAA 322
|| |||||
Sbjct 3215752 GACAGAGCAA 3215761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497488398848
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