Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq400 277 4e-72 seq93 277 4e-72 seq1 246 7e-63 seq345 156 1e-35 seq65 145 2e-32 seq621 111 4e-22 seq1463 100 7e-19 seq334 75.2 3e-11 >seq400 Length=1097662 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 136080 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 136021 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 136020 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 135961 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||||| ||| |||| | | ||||||| Sbjct 135960 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTGCCAAGCTGGAGTACGGTAGGGGCA 135901 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 135900 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 135841 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 135840 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 135781 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| ||||| || | | | ||| || | Sbjct 135780 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTGGGCG-CTGTGCGTATCGACCC 135722 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 135721 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 135677 Score = 221 bits (244), Expect = 3e-55 Identities = 255/340 (75%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 193948 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 193889 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | ||| Sbjct 193888 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 193829 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | | ||| |||| | ||||| | || || ||||| Sbjct 193828 AAAGTC---GCCAAAAACTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGGGAC 193775 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 ||||| ||||||||| | |||||| |||||||| | |||| | | |||||| ||| Sbjct 193774 AGGGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCAGAGATCTACGAAGGAACGCCAA 193715 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| || ||||||| |||||||| || Sbjct 193714 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAA 193655 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 | ||||||||||||||||||||||| |||||||||||||| Sbjct 193654 CGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 193615 >seq93 Length=2366463 Score = 277 bits (306), Expect = 4e-72 Identities = 306/405 (76%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 2082381 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 2082322 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 2082321 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 2082262 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||||| ||| |||| | | ||||||| Sbjct 2082261 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTGCCAAGCTGGAGTACGGTAGGGGCA 2082202 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 2082201 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 2082142 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 2082141 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 2082082 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| ||||| || | | | ||| || | Sbjct 2082081 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTGGGCG-CTGTGCGTATCGACCC 2082023 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 2082022 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 2081978 Score = 150 bits (166), Expect = 4e-34 Identities = 182/245 (74%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 165 GCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTA 224 ||| |||| | | ||||||| |||||| | ||| |||||||||||||||||| || Sbjct 2080426 GCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCG 2080367 Query 225 GGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAG 284 | | |||||||| | |||| || |||||| | | |||||||||||| |||||| Sbjct 2080366 GAAAGAACACCAACGACGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAG 2080307 Query 285 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAG 344 | ||||||| || ||||||||||||| ||||||| ||||||||||||| ||||| | Sbjct 2080306 CTAGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTGG 2080247 Query 345 GTGTCGGGGCGCAT-AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGG 403 | | | | ||| || | | | |||| | ||| ||||| ||||||| || || ||| Sbjct 2080246 GCG-CTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCCGGG 2080188 Query 404 GAGTA 408 ||||| Sbjct 2080187 GAGTA 2080183 >seq1 Length=6409783 Score = 246 bits (272), Expect = 7e-63 Identities = 299/405 (74%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| | ||||||| |||||||||||||| ||||||| ||| || ||| Sbjct 690239 TGGGGAATAAGCATCAGCTAACTCTGTGCCAGCAGCCGCAGTAATACAGAGGATGCAAGC 690298 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||| ||||| | |||| |||||| || |||||||| || ||||||| | || ||| Sbjct 690299 GTTATCTGGAATGATTGGGTGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 690358 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 ||| |||||||||| || || | |||||||| | |||||| | | ||||||| Sbjct 690359 TCCTAGGGCTCAACCCTGGACAGGCGGTGGAAACTGCCAAGTTAGAGTACGGTAGGGGCA 690418 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||| || Sbjct 690419 GAGGGAATTTCCTGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAATGGCAAA 690478 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | ||| |||||||| ||||||| |||||| || ||||| Sbjct 690479 AGCACTCTGCTGGGCCAACACTAACACTGAGAGACGAAAGCTAAGGGAGCGAATGGGATT 690538 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| |||||||| |||| ||||| || | | | ||| || | Sbjct 690539 AGATACCCCAGTAGTCCTAGCCGTAAATGATGGATACTGGGCG-CTGTGCGTATCGACCC 690597 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | || |||||| ||||||| || ||||||||||| Sbjct 690598 GTGCAGTGCTGTCGCTAACGCATTAAGTATCCCGCCTGGGGAGTA 690642 Score = 172 bits (190), Expect = 1e-40 Identities = 207/279 (74%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 131 GGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGA 190 |||||||||| || || | |||||||| ||| |||| | | ||||||| ||| Sbjct 691550 GGCTCAACCCTGGACAGGCGGTGGAAACTGCCAAGCTGGAGTACGGTAGGGGCAGAGGGA 691609 Query 191 ATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGC 250 ||| | ||| ||||| |||||||||||| || | | |||||||| |||||| || Sbjct 691610 ATTTCCGGTGGAGCGGCGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCACT 691669 Query 251 TTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATAC 310 |||||| | | |||||||||||| ||||||| ||||||| || ||||||||||| Sbjct 691670 CTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATAC 691729 Query 311 CCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCGG 369 || ||||||| ||||||||||||| ||||| || | | | ||| || || | | | Sbjct 691730 CCCAGTAGTCCTAGCCGTAAACGATGGATACTGGGCG-CTGTGCGTATCAACCCGTGCAG 691788 Query 370 TGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| | ||| ||||| ||||||| || ||||||||||| Sbjct 691789 TGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 691827 >seq345 Length=1218342 Score = 156 bits (172), Expect = 1e-35 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||| |||||||||||| ||||||||| ||| || ||||||||||| Sbjct 621169 AAGCATCGGCTAACTCTGTGCCAGCAGCCACGGTAATACAGAGGATGCAAGCGTTATCCG 621110 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| | |||| |||||| || |||||||| || ||||||| | | ||| | | || Sbjct 621109 GAATGATTGGGAGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCATCAAATCCCAGGG 621050 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 |||||||| || || | |||||||| ||| |||| | | |||||||| ||||| Sbjct 621049 CTCAACCCTGGACAGGCGGTGGAAACTGCCAAGCTGGAGTACGGTAGGGGCAAAGGGAAT 620990 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATT 223 | | ||| || |||||||||||||| |||| Sbjct 620989 TTCCGGTGGAGTGGTGAAATGCGTAGGTATT 620959 >seq65 Length=2714061 Score = 145 bits (160), Expect = 2e-32 Identities = 239/342 (70%), Gaps = 2/342 (1%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| | | ||||| ||||||||||||| |||||||| ||| || || Sbjct 626195 TGGGGAATAAGCATCAGTTAACTCCGTGCCAGCAGCCACGGTAATATAAAGGATGCAAGT 626254 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||| |||| | ||||| ||||| | |||||||| || ||||||| || ||| Sbjct 626255 GTTATCTAGAATGATTGGGCTTAAAGCATATGTAGGTGGCTTTTTAAGTCCACTGTCAAA 626314 Query 125 GGCTATGGCTCAACCCCGGGAC-TGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGC 183 ||| ||||||||||| ||| || | |||||||| ||| |||| | | |||| Sbjct 626315 TCCTAAGGCTCAACCCCTAGACAGGCGGTGGAAACTGCCAAGCTGGAGTATGGTAAGGGC 626374 Query 184 AAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGA 243 | |||||| | ||| |||| ||||||||||||| || | | |||||||| | ||| Sbjct 626375 ATAAGGAATTTTTGGTGGAGCGATGAAATGCGTAGAGATCAAAAAGAACACCAACGACGA 626434 Query 244 AGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGAT 303 | | | |||| | | ||||| |||| || ||| |||| | || |||| Sbjct 626435 AAGTACTCTACTGGGCCAACATTGACATTGAGAGATGAGAGC-AGGGGTGTGAATGGGAT 626493 Query 304 TAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 |||||||| ||||||| ||| |||| |||| | ||| || Sbjct 626494 TAGATACCTCAGTAGTCCTAGCCATAAATGATGGACACTGGG 626535 >seq621 Length=738574 Score = 111 bits (122), Expect = 4e-22 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 230 AACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGG 289 ||||||| |||||| || |||||| | | |||||||||||| ||||||| || Sbjct 195908 AACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGG 195967 Query 290 GGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTC 349 ||||| || ||||||||| ||| ||||||| ||||||||||||| ||||| || | | Sbjct 195968 GGAGCGAATGGGATTAGATGCCCCAGTAGTCCTAGCCGTAAACGATGGATACTGGGCG-C 196026 Query 350 GGGGCGCAT-AAGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | ||| || | | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 196027 TGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 196086 >seq1463 Length=113674 Score = 100 bits (110), Expect = 7e-19 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| || |||||| || ||| ||| | ||| ||| ||| || |||||||||| Sbjct 10210 AAGCATCGACTAACTTTGTATTAGCGGCCACTGTATTACAAAGGATGCAAGCGTTATCCA 10151 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 ||| | ||||||||||| | |||||||| || ||||||| | || ||| |||| Sbjct 10150 AAATAATTGGGCGTAAAGCATCTGTAGGTGGCTTTTTAAGTCCGTCGTCAAATCTCATGG 10091 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 |||||||| || || | |||||||| ||| | || || || |||| | ||| Sbjct 10090 CTCAACCCTGGACAAGCGGTGGAAACTGCCACGCTGGCGTATAGTAGAGGCAGAGGAAAT 10031 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATAT 222 | |||| |||||||||||| ||||| || Sbjct 10030 TTTCAGTGGAGCGGTGAAATGTGTAGAGAT 10001 >seq334 Length=1247619 Score = 75.2 bits (82), Expect = 3e-11 Identities = 85/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 229 GAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTG 288 |||||| | || ||| || ||| || ||| |||||||||||| |||||| | Sbjct 1123594 GAACACTAACGGTGAAAGCACTTTGTTGAGCTGACACTGACACTGAGAGACGAAAGTTAG 1123535 Query 289 GGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACT 342 ||||||||| ||||||||||| ||||||| || |||||||||| ||||| Sbjct 1123534 GGGAGCAAATGACATTAGATACCCCAGTAGTCCTAGCTGTAAACGATGGATACT 1123481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203110337536