Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq621 114 2e-23 seq1 100 5e-19 seq400 95.1 2e-17 seq93 93.3 8e-17 >seq621 Length=738574 Score = 114 bits (126), Expect = 2e-23 Identities = 174/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 198729 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 198788 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| Sbjct 198789 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 198841 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||| || |||||||||| ||| Sbjct 198842 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCAAAGTGAAACATCTTAGT 198898 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 | || ||||||||||| ||| | ||||| | ||||| |||||||||||||||| || Sbjct 198899 AACTAGAGGAAAAGAAAGCAAAAGTGATTCTCGTAGTAGCGGCGAGCGAAATGGGAGCAG 198958 Query 249 CCT 251 ||| Sbjct 198959 CCT 198961 >seq1 Length=6409783 Score = 100 bits (110), Expect = 5e-19 Identities = 169/239 (71%), Gaps = 17/239 (7%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAA---GCTGC 66 ||||||| ||| ||| | || ||| ||||| ||||||| ||||| | ||| | Sbjct 694992 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAA---GCGATGAAATGCTTC 695048 Query 67 GGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTG 126 ||||||| | ||| | ||| ||| || ||||| |||||| || |||| ||| Sbjct 695049 GGGGAGTT-GAAAATAAGCTTAGATTCGGAGATTCCCGAATAGGTCAACC------TTTC 695101 Query 127 GGTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTA 185 | ||| |||||||| || |||| |||| || ||| ||| || |||||||||| Sbjct 695102 AAAC--TGC-TGCTGAATCTATGGGTAGGCAAGAGACAACCTGGCAAATTGAAACATCTT 695158 Query 186 AGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 |||| | ||||||||||| ||| | ||||||| | ||| ||||||||||||| || Sbjct 695159 AGTAACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAATAGCGGCGAGCGAAATGAGA 695217 >seq400 Length=1097662 Score = 95.1 bits (104), Expect = 2e-17 Identities = 164/234 (70%), Gaps = 11/234 (5%) Strand=Plus/Minus Query 12 TGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGA 71 ||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||||| Sbjct 132508 TGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGA 132449 Query 72 GTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCA 131 || | ||| | | | ||| || ||||| | |||| || |||| ||| | Sbjct 132448 GTT-GAAAATAAGCGTAGATTCGGAGATTCCTGAATAGGTCAACC------TTTCAAAC- 132397 Query 132 TTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAG 190 ||| ||||||||| || |||| |||| || ||| ||||||||||||||||| |||| Sbjct 132396 -TGC-TGCTGAATATATGGGTAGGCAAGAGACAACATGGCGAACTGAAACATCTTAGTAA 132339 Query 191 CTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 | || |||||||| ||| | ||||| | ||| |||||||||||||||| Sbjct 132338 CCAGAGAAAAAGAAAGCAAAAGCGATTCTTGTAATAGCGGCGAGCGAAATGGGA 132285 Score = 80.6 bits (88), Expect = 5e-13 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 172 AACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGC 231 ||||||||||||| |||| | ||||||||||| ||| | ||||||| ||||| ||| Sbjct 131423 AACTGAAACATCTTAGTAACCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGC 131364 Query 232 GAGCGAAATGGGATGAGCC 250 ||||||||||||| |||| Sbjct 131363 GAGCGAAATGGGAGCAGCC 131345 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 214409 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 214468 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 214469 GGCGAGCGAGAGCGGAT 214485 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 264546 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 264605 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 264606 GGCGAGCGAGAGCGGAT 264622 >seq93 Length=2366463 Score = 93.3 bits (102), Expect = 8e-17 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 131 ATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTA 189 ||||| |||||||| ||| || | |||| || ||| || |||||||||||||| |||| Sbjct 2072963 ATTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGTGAACTGAAACATCTTAGTA 2072905 Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 | ||||||||||| ||| | ||||||| ||||| || ||||||||||||| Sbjct 2072904 ACCAGAGGAAAAGAAAGCAAAAGTGATTCCCGTAGTAGCGGTGAGCGAAATGGGA 2072850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918331560832