Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_006956.1 Length=1032 Score E Sequences producing significant alignments: (Bits) Value seq6 269 2e-69 seq551 132 3e-28 >seq6 Length=4471405 Score = 269 bits (298), Expect = 2e-69 Identities = 248/304 (82%), Gaps = 11/304 (4%) Strand=Plus/Plus Query 699 CTCAGTTTGGG-ACTCTGGCTGGGGC--CATTCTCAAAAGCCATTTATCTGGGTA-GCCT 754 |||| |||||| |||| |||| ||| |||| |||||| || |||||| ||||| || | Sbjct 4421842 CTCAATTTGGGCACTCGAGCTGTGGCGCCATTTTCAAAACCCCTTTATCCGGGTAAGCTT 4421901 Query 755 CTAATCCTTCAACTCTATTTTTCCGTTTGGTTCTG-AGAGAGTACTAAAAAGGAAATCCA 813 |||||||||||||||| |||||||||||||| ||||| |||| || ||||||||| Sbjct 4421902 CTAATCCTTCAACTCT---TTTCCGTTTGGTTCCCTAGAGAATACTGGAATGGAAATCCA 4421958 Query 814 ACCATATATGATCAAATCTAATGAT-ATAGCTGGTGAGTACTGCAACATAATTGCAATTT 872 || |||||||||||| ||| || |||| | ||| |||||||| | |||||| |||| Sbjct 4421959 ACTTTATATGATCAAAATTAACAATTATAGTCGCTGAATACTGCAATAGAATTGCTATTT 4422018 Query 873 ATGCAGTTATTTCTCTTGAATTTGGTATCTGCAATTTATGTATAAATCCCTAGCAGAATA 932 || |||| ||| |||||||||||||| |||||||||| ||||||| |||||| |||| Sbjct 4422019 ATATAGTTGTTTTTCTTGAATTTGGTAATTGCAATTTATATATAAATTCCTAGCGAAATA 4422078 Query 933 TTTTACTGGAGTGGTGAATATGTGTAGGCTTCACTATGGTGGAAATGG-AAATTTGTGTG 991 || ||||||||||||||| | | |||||||||||||| | ||||||| ||| ||||||| Sbjct 4422079 -TTCACTGGAGTGGTGAATGTCTTTAGGCTTCACTATGCTAGAAATGGAAAAATTGTGTG 4422137 Query 992 TGAT 995 |||| Sbjct 4422138 TGAT 4422141 Score = 132 bits (146), Expect = 3e-28 Identities = 128/162 (79%), Gaps = 13/162 (8%) Strand=Plus/Plus Query 341 TCTGGATAGAATTTTGATTGGTA--------AGCATTATGAATTTATTATGACATTCAAG 392 ||||| ||||||||| |||||| ||||||||||||||||||| || |||| Sbjct 4449583 TCTGGGTAGAATTTTTGTTGGTATTGAAGGAAGCATTATGAATTTATTATTGCAACCAAG 4449642 Query 393 TTTATAGGCATCATAGTGTTGCTTAGGACATACTTAGCTTGTAGTTCCAGAA-AATAGAG 451 ||||||||||||||| |||||| | |||| || || |||||||| ||| | | || Sbjct 4449643 TTTATAGGCATCATAATGTTGCGT-CAACATGCTCAGTTTGTAGTT---GAATACTCTAG 4449698 Query 452 TCATTTCTGGTTTTCTTTTACAATGGAGGTGTTTATTCCATT 493 || |||||| ||||||| || ||||||||||||||||||||| Sbjct 4449699 TCGTTTCTGATTTTCTTATATAATGGAGGTGTTTATTCCATT 4449740 >seq551 Length=834446 Score = 132 bits (146), Expect = 3e-28 Identities = 128/162 (79%), Gaps = 13/162 (8%) Strand=Plus/Plus Query 341 TCTGGATAGAATTTTGATTGGTA--------AGCATTATGAATTTATTATGACATTCAAG 392 ||||| ||||||||| |||||| ||||||||||||||||||| || |||| Sbjct 441390 TCTGGGTAGAATTTTTGTTGGTATTGAAGGAAGCATTATGAATTTATTATTGCAACCAAG 441449 Query 393 TTTATAGGCATCATAGTGTTGCTTAGGACATACTTAGCTTGTAGTTCCAGAA-AATAGAG 451 ||||||||||||||| |||||| | |||| || || |||||||| ||| | | || Sbjct 441450 TTTATAGGCATCATAATGTTGCGT-CAACATGCTCAGTTTGTAGTT---GAATACTCTAG 441505 Query 452 TCATTTCTGGTTTTCTTTTACAATGGAGGTGTTTATTCCATT 493 || |||||| ||||||| || ||||||||||||||||||||| Sbjct 441506 TCGTTTCTGATTTTCTTATATAATGGAGGTGTTTATTCCATT 441547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3196554329916