Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hevea_20brasiliensis_20[genbank_20GCA_5F001654055.1_202016-06-01] 7,452 sequences; 1,373,365,927 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1752 178 1e-39 >seq1752 Length=70440 Score = 178 bits (196), Expect = 1e-39 Identities = 581/887 (66%), Gaps = 22/887 (2%) Strand=Plus/Minus Query 61053 TCGTTTC-GTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGG 61111 ||||||| |||| |||||| || || || | || ||| ||||| || || || | Sbjct 25116 TCGTTTCTGTAT-GTTCCCAATTGAATACCCACAAATCTGGGAAATGTATAAGAAAGCCG 25058 Query 61112 AAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGC 61171 | || ||||| ||||| | |||||||||||| | || |||| | ||||||| Sbjct 25057 AGGCCTCCTTTTGGACTGCTGAGGAGGTCGATCTCTCTCAAGATCTCCGCCACTGGGAAG 24998 Query 61172 GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGG 61231 || | || |||| | || || | | ||||| | || ||||||||||| || | Sbjct 24997 CCCTAACACCCGATGAAAAGCACTTTGTCACCCATGTTCTTGCATTCTTTGCCGCCTCCG 24938 Query 61232 ACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGG 61291 | |||||||| || || | | |||||| | |||| || || || | |||| Sbjct 24937 ATGGTATCGTTCTCGAAAACCTCGCTGGACGTTTTATGAAGGAAGTCCAGGTTGCTGAGG 24878 Query 61292 CGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTG 61351 | ||| |||||| || ||||| || || || || ||| |||| || |||||||||||| Sbjct 24877 CTCGTGCTTTCTATGGATTCCAAATCGCTATTGAAAATATCCATTCCGAGATGTACAGTC 24818 Query 61352 TTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAA-CGATTGTTCAATGCCA 61408 || | | || || || || | || | || ||| ||| || ||||| |||| | Sbjct 24817 TTTTGTTGGAGACTTATATTAAAGATTCCAACGAGAA---GAATCGCTTGTTTCATGCAA 24761 Query 61409 TCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTA 61468 | ||||| | || ||| ||||| || |||||| ||| |||||| || Sbjct 24760 TTGAGACTGTCCCTTGTGTGGCTAAAAAAGCTGAGTGGGCCCTCAGGTGGATCGATGGT- 24702 Query 61469 CAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCA 61528 ||| || |||| || | || | || ||||| || ||||| ||||||| Sbjct 24701 --TCGGAGACTTTTGCGGAGAGGCTGATCGCTTTTGCCTGTGTGGAGGGAATATTTTTTT 24644 Query 61529 GTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCT 61588 |||| ||| ||| || |||||| | ||||| ||||| | ||||| || | || | Sbjct 24643 CTGGAAGCTTTTGCGCGATATTTTGGCTAAAGAAGCGTGGCTTGATGCCGGGATTAACAT 24584 Query 61589 TCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTAT 61648 || || |||||||| || || || |||||| |||| ||||| || || |||||||| Sbjct 24583 TCTCAAACGAGTTGATCTCGCGAGATGAGGGCTTGCACTGTGACTTCGCGTGTTTGCTAT 24524 Query 61649 TCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGG 61708 | ||| | | |||| | |||||||||||| | ||| || || || | Sbjct 24523 --ACGGGCTGT-TACGGAATAAGTTGAGCGAGGAGCGTGTGAAGGGGATAGTGCGAGACG 24467 Query 61709 CGGTAACTATCGAACAGGAATTTCTGACTGA--CGCTTTGCCCGTCT-CACTCATCGGCA 61765 | || |||||| ||| ||| || || ||||| || | | | | | || | Sbjct 24466 CAGTGGATATCGAGAGGGAGTTTGTGTGCGATGCGCTT---CCATGTGCCTTGGTGGGGA 24410 Query 61766 TGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTT-GGTCGAT 61824 ||||| | | || ||| ||||| ||||| || || || || | |||| ||| Sbjct 24409 TGAATGGAGAGCTGATGAGCCAGTACATTGAGTTCGTGGCTGATAGGTTGTTGGGTGCGC 24350 Query 61825 TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCG 61884 ||||||| | | |||||| ||| | || || ||||||| ||||| |||| ||| Sbjct 24349 TTGGGTACGGA-AAGATCTACAATGTGGCTAATCCTTTTGATTGGATGGAGCTGATCTCG 24291 Query 61885 CTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 ||| | || ||||||||||| || ||||| | || || || ||||| Sbjct 24290 CTGCAAGGGAAGACGAATTTCTTTGAGAAGAGAGTTGGAGAGTATCA 24244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397531892377280