Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq14700 84.2 4e-14
seq4597 78.8 2e-12
>seq14700
Length=25542
Score = 84.2 bits (92), Expect = 4e-14
Identities = 209/311 (67%), Gaps = 11/311 (4%)
Strand=Plus/Minus
Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAG---CCGAGTGATT 68
|||| |||||||||| | |||| ||| || ||||| || |||| || || | |
Sbjct 16172 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCAGGGCTC 16113
Query 69 CGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAA 128
|||| |||||||| ||| | |||||||| ||| | | | | || || ||||||
Sbjct 16112 ---TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAA 16057
Query 129 GGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGC 188
||| | ||| ||||| || ||||||||| ||| | ||||| | || ||
Sbjct 16056 GGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCT 16001
Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248
| ||| |||| | |||||||| ||| || |||| ||||| ||| | | |
Sbjct 16000 TATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGT 15941
Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308
||||| |||||||| | |||||| | | ||||||| | | || |||||||||||
Sbjct 15940 GGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAAT 15881
Query 309 GCCAATCAAAC 319
|||| || |||
Sbjct 15880 GCCACTCGAAC 15870
>seq4597
Length=187609
Score = 78.8 bits (86), Expect = 2e-12
Identities = 104/143 (73%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251
||| ||||||| |||||| ||| ||||||||||||| || |||| | ||||
Sbjct 17323 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 17264
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|||||||||| | || | ||| | |||||||| | || |||||||||||||||
Sbjct 17263 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 17204
Query 312 AATCAAACTGGGAAATAGCTCGT 334
|| ||| | ||| |||||| ||
Sbjct 17203 AACCAAGATCGGATATAGCTGGT 17181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972046196736
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |