Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq15058 134 8e-30
seq8259 134 8e-30
seq27 134 8e-30
seq6932 116 2e-24
seq61081 107 1e-21
seq8215 105 4e-21
seq10780 98.7 6e-19
seq1128 98.7 6e-19
seq867 96.9 2e-18
seq14 96.9 2e-18
seq21042 93.3 2e-17
seq7467 93.3 2e-17
seq16027 86.0 3e-15
seq13131 86.0 3e-15
seq19535 80.6 1e-13
>seq15058
Length=20236
Score = 134 bits (148), Expect = 8e-30
Identities = 100/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 15966 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 15907
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 15906 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 15850
>seq8259
Length=63958
Score = 134 bits (148), Expect = 8e-30
Identities = 100/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 30552 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 30493
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 30492 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 30436
>seq27
Length=1457134
Score = 134 bits (148), Expect = 8e-30
Identities = 100/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 10125 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 10184
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 10185 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 10241
Score = 122 bits (134), Expect = 5e-26
Identities = 97/117 (83%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||| ||||||| |||||||||| ||||| || | ||||||| |
Sbjct 35266 GAACCCAAAGACTTTAATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAACAACATCGGCT 35325
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||| ||||| || ||||| ||| |||||| ||||||||||||||||||||||
Sbjct 35326 AATCCCTGGTCGGTATCGTTTATAGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 35382
Score = 105 bits (116), Expect = 4e-21
Identities = 95/117 (81%), Gaps = 2/117 (2%)
Strand=Plus/Plus
Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCCC 60
|||||||||||||| |||||| ||||||||| ||| ||||| || |||||| |
Sbjct 32390 AACCCAAAGACTTTTATTTCTTATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCATC 32448
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| ||| |||| ||||| |||| |||||| |||| ||| |||||||||||||
Sbjct 32449 GATCCCTGGTCAGCATCGTTTATGGTTGAGACTAGGACGCTATTTGATCGTCTTCGA 32505
Score = 104 bits (114), Expect = 1e-20
Identities = 93/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| ||| |||| | |||| || ||||| |
Sbjct 67493 GAACCCAAAGACTTTGATTTCTCATAATGTGCTGGCAAAGTCCTAAAAGCAACATGCGTC 67552
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| ||||| || ||||| |||| |||||| ||||||||| ||||||||||||
Sbjct 67553 GATCCCTTGTCGGTATTGTTTATGGTTGAGACTAGGACGGTATCAGATCGTCTTCGA 67609
Score = 102 bits (112), Expect = 5e-20
Identities = 93/116 (80%), Gaps = 1/116 (1%)
Strand=Plus/Plus
Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61
|||||||||||||||||||||| |||| ||||| ||||| || | |||||| |||
Sbjct 43579 AACCCAAAGACTTTGATTTCTCATAAGTTGCCGGCAGAGTCCTAA-AACAACATCCGCCG 43637
Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||| | |||||||| |||| |||| | |||| || | ||||||||| |||||||
Sbjct 43638 ATCCTTGGTCGGCATCGTTTTTGGTTGATACTAGGATGATATCTGATCATCTTCGA 43693
Score = 93.3 bits (102), Expect = 2e-17
Identities = 93/118 (79%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59
||||||||||||||||||||||| ||||| | ||| ||||| || ||||||
Sbjct 52038 GAACCCAAAGACTTTGATTTCTCAAAAGGTTTC-AGCGGAGTCCTAAAAGCAACATCCGT 52096
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||| || ||||| ||| |||| |||||| || ||||||||||| |||||||
Sbjct 52097 CGATCCCTGGTTGGCATCGTTCTTGGTTGAGACTAGGATGGTATCTGATCATCTTCGA 52154
Score = 91.5 bits (100), Expect = 8e-17
Identities = 80/100 (80%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 18 TTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATA 77
|||||| ||||||||||| ||||| || || ||| |||||||| |||| |||
Sbjct 89441 TTTCTCTTAAGGTGCCGACGGAGTCCTAAAAGCAATATCCGTCGATCCCTGGTCGACATC 89500
Query 78 GTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||| ||| |||||| ||||||||||||||||||||||
Sbjct 89501 GTTTATTGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 89540
Score = 87.8 bits (96), Expect = 1e-15
Identities = 94/119 (79%), Gaps = 4/119 (3%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGT-CAAAATGATAACATCGC 58
|||||||||| ||||||||||| ||||||||| ||| |||| | ||| || ||||||
Sbjct 58012 GAACCCAAAGCTTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGA-AACATCTG 58069
Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
| ||| || | || || ||||| |||| ||||| || ||||||||||||||||||
Sbjct 58070 TCAATCACTGTTTGGTATCGTTTATGGTTGAGACTGGGAGAGTATCTGATCGTCTTCGA 58128
>seq6932
Length=80499
Score = 116 bits (128), Expect = 2e-24
Identities = 98/118 (83%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
|||||||||||||||||||||| |||||||||| ||| |||| || ||||||
Sbjct 62041 GAACCCAAAGACTTTGATTTCTTATAAGGTGCCG-GCGAAGTCCTAAAAGCAACATCCGT 62099
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||| |||||||| ||||| |||| |||||| ||||||||||||| ||||| ||
Sbjct 62100 CGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATTGTCTTTGA 62157
>seq61081
Length=601
Score = 107 bits (118), Expect = 1e-21
Identities = 94/117 (80%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| ||||||| | ||||| || ||||| |||
Sbjct 237 GAACCCAAAGACTTTGATTTCTCATAAGGTGTCAGTAGAGTCCTAAAAGCAACATTCCCC 178
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| | ||||||||||||||| ||
Sbjct 177 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGAAACGTATCTGATCGTCTTTGA 121
>seq8215
Length=63472
Score = 105 bits (116), Expect = 4e-21
Identities = 93/116 (80%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61
|||| ||||||||||||||||| |||||| || ||||| || |||||| ||
Sbjct 42602 AACCTAAAGACTTTGATTTCTCATAAGGTATCGTCGGAGTCCTAAAAGCAACATCCGTCG 42661
Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||| |||| ||| ||||| |||| |||||| |||||||| |||||||||||||
Sbjct 42662 ATCCCTGGTCGACATCGTTTATGGTTGAGACTAGGACGGTATTTGATCGTCTTCGA 42717
>seq10780
Length=43125
Score = 98.7 bits (108), Expect = 6e-19
Identities = 92/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|||||||||||||||||||||| ||| ||||||| |||| || ||| ||| |
Sbjct 20604 GAACCCAAAGACTTTGATTTCTTATAATGTGCCGACGAAGTCCTAAAAGTAATATCTTTC 20663
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| ||| ||| |||| | ||||||||| ||||||||||| || |||||||
Sbjct 20664 GATCCCTGGTCAACATTATTTATGATTAAGACTATGACGGTATCTGGTCATCTTCGA 20720
>seq1128
Length=236249
Score = 98.7 bits (108), Expect = 6e-19
Identities = 92/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||||||||||||||||| |||||||| | ||||| || ||||| |
Sbjct 70603 GAACCCAAAGACTTTGATTTCTCATAAGGTGCTGGAGGAGTCCTAAAAGCAACATTCAGC 70662
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||| ||| ||||| |||| |||||| |||| ||| ||||| |||| ||
Sbjct 70663 GATCCCTGGTCGACATCGTTTATGGTTGAGACTAGGACGATATTTGATCTTCTTTGA 70719
>seq867
Length=430648
Score = 96.9 bits (106), Expect = 2e-18
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61
|||||||||||||||||||||| |||||| |||| ||||| || ||| || ||
Sbjct 153106 AACCCAAAGACTTTGATTTCTCATAAGGTACCGACTGAGTCCTAAAAGTAATATATGTCG 153047
Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||| ||| | || |||| |||| |||||| ||||||||||||| |||| ||
Sbjct 153046 ATCCCTGGTCAGTATCATTTATGGTTGAGACTATGACGGTATCTGATTATCTTTGA 152991
>seq14
Length=827631
Score = 96.9 bits (106), Expect = 2e-18
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61
||||||||||||||||||| || ||||||| || ||||| || |||||| ||
Sbjct 38690 AACCCAAAGACTTTGATTTTTCATAAGGTGTCGGCGGAGTCCTAAAAGCAACATCTGTCG 38749
Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||| || ||||| ||||| |||| |||||| |||| ||| ||||| | |||||
Sbjct 38750 ATCCCTGGTTGGCATCGTTTATGGTTGAGACTATGACGATATATGATCATGTTCGA 38805
Score = 93.3 bits (102), Expect = 2e-17
Identities = 92/115 (80%), Gaps = 3/115 (3%)
Strand=Plus/Plus
Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGT-CAAAATGATAACATCGCCC 60
|||||||||||||||||||||| |||||| ||| |||| | ||| | ||||||
Sbjct 46522 AACCCAAAGACTTTGATTTCTCATAAGGTATCGACGGAGTTCTAAAATA-AACATCCAGT 46580
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115
||||| || ||| ||| |||| ||||||||||| |||| ||| |||||||||||
Sbjct 46581 GATCCATA-TCGACATCTTTTATGGTTAAGACTAGGACGATATTTGATCGTCTTC 46634
Score = 82.4 bits (90), Expect = 4e-14
Identities = 89/117 (76%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCT-CGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59
|||||||||||||||| ||| | | |||||| | || |||| || |||||| |
Sbjct 75494 GAACCCAAAGACTTTGTTTTTTTCATAAGGTACTGACATAGTCCTAAAAGCAACATCCAC 75553
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCG 116
|||||||| || |||| |||| ||| |||||| |||| |||||||||||| |||
Sbjct 75554 CGATCCCTGGTTGGCACCATTTATAGTTGAGACTAGGACGATATCTGATCGTCATCG 75610
>seq21042
Length=12019
Score = 93.3 bits (102), Expect = 2e-17
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61
|||||||||||||||||||||| ||||||| | ||||| || |||||| ||
Sbjct 5997 AACCCAAAGACTTTGATTTCTCATAAGGTGTTGGCGGAGTCCTAAAAGCAACATCCGTCG 6056
Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||| ||| |||| ||||| ||| |||||| ||| ||||||||| |||| ||
Sbjct 6057 ATCCCTGGTCAGCATCGTTTATGGTCGAGACTAGGACTATATCTGATCATCTTTGA 6112
>seq7467
Length=74683
Score = 93.3 bits (102), Expect = 2e-17
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61
|||||||||||||||||||||| ||||||| | ||||| || |||||| ||
Sbjct 36272 AACCCAAAGACTTTGATTTCTCATAAGGTGTTGGCGGAGTCCTAAAAGCAACATCCGTCG 36331
Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||| ||| |||| ||||| ||| |||||| ||| ||||||||| |||| ||
Sbjct 36332 ATCCCTGGTCAGCATCGTTTATGGTCGAGACTAGGACTATATCTGATCATCTTTGA 36387
>seq16027
Length=16755
Score = 86.0 bits (94), Expect = 3e-15
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110
|||||| ||||||||| |||||||| ||||| |||| |||||| |||||||||| ||||
Sbjct 15482 AACATCCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCG 15423
Query 111 TCTTCGA 117
|||||||
Sbjct 15422 TCTTCGA 15416
>seq13131
Length=30407
Score = 86.0 bits (94), Expect = 3e-15
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110
|||||| ||||||||| |||||||| ||||| |||| |||||| |||||||||| ||||
Sbjct 26117 AACATCCGCCGATCCCTGGTCGGCATGGTTTATGGTTGAGACTAGGACGGTATCTAATCG 26058
Query 111 TCTTCGA 117
|||||||
Sbjct 26057 TCTTCGA 26051
>seq19535
Length=8387
Score = 80.6 bits (88), Expect = 1e-13
Identities = 58/67 (87%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110
||||| ||||||||| |||||||| ||||| |||| |||||| |||||||||| ||||
Sbjct 977 AACATTCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCG 918
Query 111 TCTTCGA 117
|||||||
Sbjct 917 TCTTCGA 911
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278197756320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |