Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq15058 134 8e-30 seq8259 134 8e-30 seq27 134 8e-30 seq6932 116 2e-24 seq61081 107 1e-21 seq8215 105 4e-21 seq10780 98.7 6e-19 seq1128 98.7 6e-19 seq867 96.9 2e-18 seq14 96.9 2e-18 seq21042 93.3 2e-17 seq7467 93.3 2e-17 seq16027 86.0 3e-15 seq13131 86.0 3e-15 seq19535 80.6 1e-13 >seq15058 Length=20236 Score = 134 bits (148), Expect = 8e-30 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| || |||||| || Sbjct 15966 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 15907 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 15906 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 15850 >seq8259 Length=63958 Score = 134 bits (148), Expect = 8e-30 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| || |||||| || Sbjct 30552 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 30493 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 30492 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 30436 >seq27 Length=1457134 Score = 134 bits (148), Expect = 8e-30 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||||| ||||| || |||||| || Sbjct 10125 GAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 10184 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 10185 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 10241 Score = 122 bits (134), Expect = 5e-26 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||| ||||||| |||||||||| ||||| || | ||||||| | Sbjct 35266 GAACCCAAAGACTTTAATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAACAACATCGGCT 35325 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| ||||| || ||||| ||| |||||| |||||||||||||||||||||| Sbjct 35326 AATCCCTGGTCGGTATCGTTTATAGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 35382 Score = 105 bits (116), Expect = 4e-21 Identities = 95/117 (81%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCCC 60 |||||||||||||| |||||| ||||||||| ||| ||||| || |||||| | Sbjct 32390 AACCCAAAGACTTTTATTTCTTATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCATC 32448 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| ||| |||| ||||| |||| |||||| |||| ||| ||||||||||||| Sbjct 32449 GATCCCTGGTCAGCATCGTTTATGGTTGAGACTAGGACGCTATTTGATCGTCTTCGA 32505 Score = 104 bits (114), Expect = 1e-20 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| ||| |||| | |||| || ||||| | Sbjct 67493 GAACCCAAAGACTTTGATTTCTCATAATGTGCTGGCAAAGTCCTAAAAGCAACATGCGTC 67552 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| ||||| || ||||| |||| |||||| ||||||||| |||||||||||| Sbjct 67553 GATCCCTTGTCGGTATTGTTTATGGTTGAGACTAGGACGGTATCAGATCGTCTTCGA 67609 Score = 102 bits (112), Expect = 5e-20 Identities = 93/116 (80%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||||||||||||||||| |||| ||||| ||||| || | |||||| ||| Sbjct 43579 AACCCAAAGACTTTGATTTCTCATAAGTTGCCGGCAGAGTCCTAA-AACAACATCCGCCG 43637 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| | |||||||| |||| |||| | |||| || | ||||||||| ||||||| Sbjct 43638 ATCCTTGGTCGGCATCGTTTTTGGTTGATACTAGGATGATATCTGATCATCTTCGA 43693 Score = 93.3 bits (102), Expect = 2e-17 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||||||||||||||||| ||||| | ||| ||||| || |||||| Sbjct 52038 GAACCCAAAGACTTTGATTTCTCAAAAGGTTTC-AGCGGAGTCCTAAAAGCAACATCCGT 52096 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| || ||||| ||| |||| |||||| || ||||||||||| ||||||| Sbjct 52097 CGATCCCTGGTTGGCATCGTTCTTGGTTGAGACTAGGATGGTATCTGATCATCTTCGA 52154 Score = 91.5 bits (100), Expect = 8e-17 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 18 TTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATA 77 |||||| ||||||||||| ||||| || || ||| |||||||| |||| ||| Sbjct 89441 TTTCTCTTAAGGTGCCGACGGAGTCCTAAAAGCAATATCCGTCGATCCCTGGTCGACATC 89500 Query 78 GTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| ||| |||||| |||||||||||||||||||||| Sbjct 89501 GTTTATTGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 89540 Score = 87.8 bits (96), Expect = 1e-15 Identities = 94/119 (79%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGT-CAAAATGATAACATCGC 58 |||||||||| ||||||||||| ||||||||| ||| |||| | ||| || |||||| Sbjct 58012 GAACCCAAAGCTTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGA-AACATCTG 58069 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 | ||| || | || || ||||| |||| ||||| || |||||||||||||||||| Sbjct 58070 TCAATCACTGTTTGGTATCGTTTATGGTTGAGACTGGGAGAGTATCTGATCGTCTTCGA 58128 >seq6932 Length=80499 Score = 116 bits (128), Expect = 2e-24 Identities = 98/118 (83%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 |||||||||||||||||||||| |||||||||| ||| |||| || |||||| Sbjct 62041 GAACCCAAAGACTTTGATTTCTTATAAGGTGCCG-GCGAAGTCCTAAAAGCAACATCCGT 62099 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| |||||||| ||||| |||| |||||| ||||||||||||| ||||| || Sbjct 62100 CGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATTGTCTTTGA 62157 >seq61081 Length=601 Score = 107 bits (118), Expect = 1e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| ||||||| | ||||| || ||||| ||| Sbjct 237 GAACCCAAAGACTTTGATTTCTCATAAGGTGTCAGTAGAGTCCTAAAAGCAACATTCCCC 178 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| | ||||||||||||||| || Sbjct 177 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGAAACGTATCTGATCGTCTTTGA 121 >seq8215 Length=63472 Score = 105 bits (116), Expect = 4e-21 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||| ||||||||||||||||| |||||| || ||||| || |||||| || Sbjct 42602 AACCTAAAGACTTTGATTTCTCATAAGGTATCGTCGGAGTCCTAAAAGCAACATCCGTCG 42661 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| |||| ||| ||||| |||| |||||| |||||||| ||||||||||||| Sbjct 42662 ATCCCTGGTCGACATCGTTTATGGTTGAGACTAGGACGGTATTTGATCGTCTTCGA 42717 >seq10780 Length=43125 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||||||||| ||| ||||||| |||| || ||| ||| | Sbjct 20604 GAACCCAAAGACTTTGATTTCTTATAATGTGCCGACGAAGTCCTAAAAGTAATATCTTTC 20663 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| ||| ||| |||| | ||||||||| ||||||||||| || ||||||| Sbjct 20664 GATCCCTGGTCAACATTATTTATGATTAAGACTATGACGGTATCTGGTCATCTTCGA 20720 >seq1128 Length=236249 Score = 98.7 bits (108), Expect = 6e-19 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||| | ||||| || ||||| | Sbjct 70603 GAACCCAAAGACTTTGATTTCTCATAAGGTGCTGGAGGAGTCCTAAAAGCAACATTCAGC 70662 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||| ||| ||||| |||| |||||| |||| ||| ||||| |||| || Sbjct 70663 GATCCCTGGTCGACATCGTTTATGGTTGAGACTAGGACGATATTTGATCTTCTTTGA 70719 >seq867 Length=430648 Score = 96.9 bits (106), Expect = 2e-18 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||||||||||||||||| |||||| |||| ||||| || ||| || || Sbjct 153106 AACCCAAAGACTTTGATTTCTCATAAGGTACCGACTGAGTCCTAAAAGTAATATATGTCG 153047 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| ||| | || |||| |||| |||||| ||||||||||||| |||| || Sbjct 153046 ATCCCTGGTCAGTATCATTTATGGTTGAGACTATGACGGTATCTGATTATCTTTGA 152991 >seq14 Length=827631 Score = 96.9 bits (106), Expect = 2e-18 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 ||||||||||||||||||| || ||||||| || ||||| || |||||| || Sbjct 38690 AACCCAAAGACTTTGATTTTTCATAAGGTGTCGGCGGAGTCCTAAAAGCAACATCTGTCG 38749 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| || ||||| ||||| |||| |||||| |||| ||| ||||| | ||||| Sbjct 38750 ATCCCTGGTTGGCATCGTTTATGGTTGAGACTATGACGATATATGATCATGTTCGA 38805 Score = 93.3 bits (102), Expect = 2e-17 Identities = 92/115 (80%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGT-CAAAATGATAACATCGCCC 60 |||||||||||||||||||||| |||||| ||| |||| | ||| | |||||| Sbjct 46522 AACCCAAAGACTTTGATTTCTCATAAGGTATCGACGGAGTTCTAAAATA-AACATCCAGT 46580 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTC 115 ||||| || ||| ||| |||| ||||||||||| |||| ||| ||||||||||| Sbjct 46581 GATCCATA-TCGACATCTTTTATGGTTAAGACTAGGACGATATTTGATCGTCTTC 46634 Score = 82.4 bits (90), Expect = 4e-14 Identities = 89/117 (76%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCT-CGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCC 59 |||||||||||||||| ||| | | |||||| | || |||| || |||||| | Sbjct 75494 GAACCCAAAGACTTTGTTTTTTTCATAAGGTACTGACATAGTCCTAAAAGCAACATCCAC 75553 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCG 116 |||||||| || |||| |||| ||| |||||| |||| |||||||||||| ||| Sbjct 75554 CGATCCCTGGTTGGCACCATTTATAGTTGAGACTAGGACGATATCTGATCGTCATCG 75610 >seq21042 Length=12019 Score = 93.3 bits (102), Expect = 2e-17 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||||||||||||||||| ||||||| | ||||| || |||||| || Sbjct 5997 AACCCAAAGACTTTGATTTCTCATAAGGTGTTGGCGGAGTCCTAAAAGCAACATCCGTCG 6056 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| ||| |||| ||||| ||| |||||| ||| ||||||||| |||| || Sbjct 6057 ATCCCTGGTCAGCATCGTTTATGGTCGAGACTAGGACTATATCTGATCATCTTTGA 6112 >seq7467 Length=74683 Score = 93.3 bits (102), Expect = 2e-17 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 2 AACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCG 61 |||||||||||||||||||||| ||||||| | ||||| || |||||| || Sbjct 36272 AACCCAAAGACTTTGATTTCTCATAAGGTGTTGGCGGAGTCCTAAAAGCAACATCCGTCG 36331 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| ||| |||| ||||| ||| |||||| ||| ||||||||| |||| || Sbjct 36332 ATCCCTGGTCAGCATCGTTTATGGTCGAGACTAGGACTATATCTGATCATCTTTGA 36387 >seq16027 Length=16755 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 |||||| ||||||||| |||||||| ||||| |||| |||||| |||||||||| |||| Sbjct 15482 AACATCCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCG 15423 Query 111 TCTTCGA 117 ||||||| Sbjct 15422 TCTTCGA 15416 >seq13131 Length=30407 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 |||||| ||||||||| |||||||| ||||| |||| |||||| |||||||||| |||| Sbjct 26117 AACATCCGCCGATCCCTGGTCGGCATGGTTTATGGTTGAGACTAGGACGGTATCTAATCG 26058 Query 111 TCTTCGA 117 ||||||| Sbjct 26057 TCTTCGA 26051 >seq19535 Length=8387 Score = 80.6 bits (88), Expect = 1e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 ||||| ||||||||| |||||||| ||||| |||| |||||| |||||||||| |||| Sbjct 977 AACATTCGCCGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTAATCG 918 Query 111 TCTTCGA 117 ||||||| Sbjct 917 TCTTCGA 911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278197756320