Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq11912 165 2e-38 seq10548 161 3e-37 seq17499 143 7e-32 seq2344 143 7e-32 seq10820 120 8e-25 seq10262 86.0 2e-14 >seq11912 Length=37563 Score = 165 bits (182), Expect = 2e-38 Identities = 245/344 (71%), Gaps = 20/344 (6%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 34578 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 34519 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT---TGTGTAAGACAGGTGTGA 124 || ||||||| ||||||||||||| | || ||||||| | | || || ||| Sbjct 34518 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAG---TGA 34462 Query 125 AATCCCCGGGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 || | | | || |||| | | ||| | | || ||| ||||| | ||||| Sbjct 34461 AAGTCGC---CAAAAACTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 34405 Query 184 GGGGGTGGAATTCCACGTGT--------AGCAG--TGAAATGCGTAGATATGTGGAGGAA 233 | | |||||||| | |||| || || |||||| | || | | ||||| Sbjct 34404 GAGAGTGGAATTTCGTGTGTCTTTTAAGAGAAGGGTGAAATCTCGAAATCTACGAAGGAA 34345 Query 234 CACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGG 293 | |||| ||||||||||| | ||||| || |||||| | ||||||| ||||| Sbjct 34344 CGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGG 34285 Query 294 AGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||| ||||||||||||||||||||||||||| ||| |||||||| Sbjct 34284 AGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 34241 >seq10548 Length=46761 Score = 161 bits (178), Expect = 3e-37 Identities = 281/409 (69%), Gaps = 25/409 (6%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 20919 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 20860 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||| ||| ||| |||||||||||| | ||| | | | |||| | | || Sbjct 20859 AAGCCTTATCCGG--------GGCGTAAAGCGTCTGTAGGTGCCTTTTTAAGTCCGCCGT 20808 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| |||| ||| || | | || | || |||| | || Sbjct 20807 CAAATCCCAGGGCCGG---TGGAAACTAC-----------CAAG-CTGGAGTACGGTAGG 20763 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| || |||||||||||||| || | | ||| ||||| || Sbjct 20762 GGCAGAGGGAATTTCCGGTGGTGCGGTGAAATGCGTAGAGATCGGAAAGAAGACCAACGG 20703 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| |||||||| || | Sbjct 20702 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCATGGGGAGCGAATGG 20643 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 ||||||||| || ||||||| ||| |||||||| ||||| | || | | | Sbjct 20642 GATTAGATAGCCCTGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 20583 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 20582 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 20534 >seq17499 Length=11481 Score = 143 bits (158), Expect = 7e-32 Identities = 230/328 (70%), Gaps = 2/328 (1%) Strand=Plus/Plus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||| ||||| || |||||| |||||||||| || ||||||| ||| |||||| |||| Sbjct 7230 GAAAAAGCATCGACTAACTCTGTGCCAGCAGTCGTTGTAATACAGAGGATGCAAGAGTTA 7289 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 ||| ||| | | |||||||||||| ||| || | | || | | | ||| |||||| Sbjct 7290 TTCGAAATGATTAGGCGTAAAGCGTCTATAGGTGGCTTTTTATGTCCGCTGTAAAATCCT 7349 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACT-GCACGACTAGAGTGTGTCAGAGGGGGGT 189 |||||| |||| ||| | | | ||| || || | |||| || || || Sbjct 7350 CGGGCTCAACCCTGGACAGACGGTGGAAACTACCAAGA-TGGAGTATGGTAGGGGCAAAG 7408 Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| ||| ||| | ||||| ||||| || ||| ||||||||| |||||| || Sbjct 7409 GGAATTTTCGGTGGAGCGATAAAATGTGTAGAGATCGGGAAGAACACCAACGGCGAAAGC 7468 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||||| |||||||| || ||||||| ||||||| || ||||||| Sbjct 7469 ACTCTACTGGGCCGACACTGACACTAGGAGACGAAAGTTAGGGGAGCGAATGAGATTAGA 7528 Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||| ||||||| | | |||||||| Sbjct 7529 TACCCCAGTAGTCCTAGTCGTAAACGAT 7556 >seq2344 Length=172810 Score = 143 bits (158), Expect = 7e-32 Identities = 228/327 (70%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 24952 GAATAAGCATCGGCTAACTCTGTGCCAACAGCCGCGGTAATACAGAGGATACAAGCGTTA 24893 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 || ||| | | || ||||||||| | ||| || | | |||| | | || ||||||| Sbjct 24892 TCCGAAATGATTAGGTGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCC 24833 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 |||| |||| ||| | || ||| | || |||| | || || | | Sbjct 24832 ATGGCTCAACCCTGGACAGGTGGTTAAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGG 24773 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 ||||| || ||| |||||||| ||||| | | | ||||||||| || ||| ||| Sbjct 24772 GAATTTTCGGTAGAGCGGTGAAATGTGTAGAGGTCAGAAAGAACACCAACGGTGAAAGCA 24713 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 | ||||| |||||||| || | |||||||| | |||| || ||| ||||| Sbjct 24712 CTCTGCTGGGTCGACACTGACACTGAGAGACGAAAGCTAGTGGAGGGAATGGGAATAGAT 24653 Query 311 ACCCTGGTAGTCCACGCCCTAAACGAT 337 |||| | ||||| ||| |||||||| Sbjct 24652 ACCCCAGCAGTCCTAGCCGTAAACGAT 24626 >seq10820 Length=75845 Score = 120 bits (132), Expect = 8e-25 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 7 TGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGC 66 ||| ||||||||| ||||||||| |||||||||| ||||||||||| ||| |||||| Sbjct 68893 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGTCGCGGTAATACAGAGGATGCAAGA 68834 Query 67 GTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAA 126 |||| ||||||| | | |||||||||||| | | | || | | || | | | ||| ||| Sbjct 68833 GTTATTCGGAATGATTAGGCGTAAAGCGTCTGTATGTGGCTTTTTATGTCCGCTGTAAAA 68774 Query 127 TCCCCGGGCTTAACCTGGGAA 147 ||| |||||| |||| |||| Sbjct 68773 TCCTCGGGCTCAACCCTGGAA 68753 Score = 91.5 bits (100), Expect = 4e-16 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| |||| ||||||| ||||| || ||| ||||||||| |||||| | Sbjct 62836 GGAATTTCCGGTGGAGCAATGAAATGTGTAGAGATTGGGAAGAACACCAACGGCGAAAGA 62777 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||||| ||||||| || |||||||| ||||||| || ||||||| Sbjct 62776 ACTCTGCTGGGCCGACACTGATACTAGGAGACGAAAGCTAGGGGAGCGAATGAGATTAGA 62717 Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||| ||||||| | | |||||||| Sbjct 62716 TACCCCAGTAGTCCTAGTCGTAAACGAT 62689 >seq10262 Length=73263 Score = 86.0 bits (94), Expect = 2e-14 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 208 GTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACAC 267 ||||||| | || | || ||||||||||| || ||| || | ||||| || Sbjct 4536 GTGAAATCTCGAAATCTATGAAGGAACACCAAAAGCAAAGACAATTCTCTGGGTCCCTAC 4595 Query 268 TGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGC 327 |||||| | ||||||| |||||||| |||| |||||||||||||||||||||| | Sbjct 4596 CGACGCTGGGGTGCGAAAGCATGGGGAGCGAACATGATTAGATACCCTGGTAGTCCATGT 4655 Query 328 CCTAAACGAT 337 | |||||||| Sbjct 4656 CGTAAACGAT 4665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1288600714752