Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq4597 143 4e-32
seq14700 141 1e-31
seq2240 78.8 1e-12
>seq4597
Length=187609
Score = 143 bits (158), Expect = 4e-32
Identities = 178/241 (74%), Gaps = 12/241 (5%)
Strand=Plus/Plus
Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67
||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||||
Sbjct 15769 TTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCCTG 15827
Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127
|||||||| |||||||||||| ||| || | | ||| | | | |||| | |
Sbjct 15828 TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGAT- 15884
Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187
|| || | ||||||||||||||| ||||||||| ||||||||||| ||||||
Sbjct 15885 -------AGGAGAG-CACCCCTTCTCCCGAGGTTACGGGGTCATTTTGCCGAGTTCCTTC 15936
Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGT 247
|| |||| | | | |||| |||||| |||||| || ||||||||||||||| |||
Sbjct 15937 GACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGT 15996
Query 248 A 248
|
Sbjct 15997 A 15997
>seq14700
Length=25542
Score = 141 bits (156), Expect = 1e-31
Identities = 177/243 (73%), Gaps = 20/243 (8%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 14815 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 14873
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 14874 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 14920
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 14921 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 14974
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 14975 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 15034
Query 246 GTA 248
|||
Sbjct 15035 GTA 15037
>seq2240
Length=170089
Score = 78.8 bits (86), Expect = 1e-12
Identities = 82/108 (76%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
|| ||| ||||||||||||||| ||| |||||| ||| ||||||| | |||| |
Sbjct 52380 GGTACCTTTTCTCCCGAAGTTACAGGGTTATTTTGTCGAGTTCCTTAGAGAGAGTTGTCT 52321
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|| | ||| ||||||| ||||| |||||||||||| ||| ||||
Sbjct 52320 CGTGCCCCTAGGTATTCTTTACCTACCCACCTGTGTCGATTTCGGGTA 52273
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 693878738224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |