Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq4597 244 3e-62 seq834 174 4e-41 seq11196 141 2e-31 seq3242 127 5e-27 seq14700 114 3e-23 seq157 105 2e-20 seq13076 95.1 3e-17 seq2240 86.0 2e-14 >seq4597 Length=187609 Score = 244 bits (270), Expect = 3e-62 Identities = 301/412 (73%), Gaps = 21/412 (5%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 15581 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 15640 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 15641 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 15700 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||| ||| || | ||||| || | || Sbjct 15701 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGTTTCCATTCAAAGCTT----ATAAC--AC 15754 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | || || |||| |||||||||||| |||| || |||||| || || | | Sbjct 15755 TTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 15814 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 15815 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 15874 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||| ||||||| | | Sbjct 15875 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAGGTTACGGGGTCA 15919 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 15920 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 15971 >seq834 Length=261106 Score = 174 bits (192), Expect = 4e-41 Identities = 203/273 (74%), Gaps = 6/273 (2%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | | || ||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 94739 TACTCCGTATTTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 94680 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 || |||| ||||| |||||||||| ||||| ||||||||||||||||||||||||| Sbjct 94679 GTCATTACACCATTTGTGCAGGTCGCTACTTATGTGACAAGGAATTTCGCTACCTTAGGA 94620 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 |||| ||||| |||||||||||| |||| ||| || | ||||| || | || Sbjct 94619 TAGTTAGAGTTACTGCCGCCGTTTACTGGGGTTTCCATTCAAAGCTT----ATAAC--AC 94566 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | || || |||| ||||||| |||| |||| || |||||| || || | | Sbjct 94565 TTCTCCTTTTGACTTTCCAGCACCGGCCAGGTGTCAGACTCTATACATCGTGTTACCACT 94506 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 | ||||||| |||| ||||||||||||||||| Sbjct 94505 TAGCAGAGTCATGTGCTTTTAATAAACAGTCGC 94473 >seq11196 Length=45469 Score = 141 bits (156), Expect = 2e-31 Identities = 175/237 (74%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 |||| || |||||||||||||| || | ||||||| | ||| |||||| | Sbjct 11079 GCGGGTAGTCTGCATCTTCACAGACATGTTTATTTCACATATCCTCTCTCCAAGACAGTG 11020 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 || ||| ||||||| ||| || ||| ||||||||||||||||||||| ||||||| Sbjct 11019 CCAAGATCATTACGCCTTTCATGTGAATCGAAACTTACCCGACAAGGAATTTTGCTACCT 10960 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC-GTTA 180 |||||||||||| ||||||| | ||||| |||||||||||| || | || | | || | Sbjct 10959 TAGGACCGTTATAGTTACGGTCTCCGTTCACCGGGGCTTCGGTCGACGACTCCCCTGTCA 10900 Query 181 GCTAACCCCATCAA-----TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATAC 232 | | |||||| || |||||| ||||| ||||||| |||| ||| |||| Sbjct 10899 --TCAAGTCATCAACTTCCTTGACCTTCTGGCACTGGGCAGGGGTCATCCCCCATAC 10845 >seq3242 Length=139294 Score = 127 bits (140), Expect = 5e-27 Identities = 122/155 (79%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 ||||||||||||| || || ||||||| ||| ||| ||||| ||| |||| Sbjct 17245 CTGCATCTTCACATACATGTCTATTTCACCGAGCCTCTCTCCAAGACAATGCCCAGATCG 17186 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 ||||||| ||| ||| |||| |||| ||||||||| |||||||||||||||||||| | Sbjct 17185 TTACGCC-TTCATGCGGGTCAAAACTAACCCGACAAATAATTTCGCTACCTTAGGACCAT 17127 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 ||| ||||||||| | |||||| |||| |||| || Sbjct 17126 TATAGTTACGGCCACTGTTTACTGGGGTTTCGGTC 17092 >seq14700 Length=25542 Score = 114 bits (126), Expect = 3e-23 Identities = 162/232 (70%), Gaps = 23/232 (10%) Strand=Plus/Plus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 || |||||||||||| |||||||||||| ||| |||| | ||| || ||||| ||| Sbjct 14811 TTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAG 14870 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACG 314 |||||||||| ||||||||||| |||||||| || ||||| ||| Sbjct 14871 ACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CCCTTTGT 14924 Query 315 GAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCT 374 ||| | ||| | ||||||||||||||||||| || ||||||| Sbjct 14925 GAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCG 14967 Query 375 AGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 14968 AGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 15019 >seq157 Length=539842 Score = 105 bits (116), Expect = 2e-20 Identities = 200/294 (68%), Gaps = 4/294 (1%) Strand=Plus/Minus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 || |||||||||| || || ||||||| ||| || ||| | ||| || | Sbjct 425859 CTACATCTTCACATACATGTCTATTTCACCGAGCTTCTCTCCAAGATAATGCCCAGATTG 425800 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 |||| || ||| ||| ||| | || ||||| || || ||||||||||||||||||| | Sbjct 425799 TTACACCTTTCATGCGGGTTGAAATTTACCAGAAAAAAAATTTCGCTACCTTAGGACTAT 425740 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAG----CTTCGCGTTAGCTAAC 186 ||| |||||| | |||| | |||||||||| || | ||| | | || | || Sbjct 425739 TATAGTTACGACTATCGTTCATCGGGGCTTCGGTCGTCGGCTCCCTTGTCATAAGGTTAC 425680 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||| ||||| |||||| ||| |||||||| | | |||| | ||| | | Sbjct 425679 CAACTTCATTGACCTTTCGGCACTGGGTAGGCGTCAGCCTCCATACATGGTCTTACAACT 425620 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||| ||| ||||||||| |||||| || ||||||| || ||||| Sbjct 425619 TTGCGGAGACATGTGTTTTTGGTAAACAATCATCCGAGCCTGGTTACTACGACC 425566 >seq13076 Length=29684 Score = 95.1 bits (104), Expect = 3e-17 Identities = 80/97 (82%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||||| || |||||| ||||| ||||||||||||| || |||| || ||||| | Sbjct 6701 ATCGTTACACCTTTCGTGTGGGTCGAAACTTACCCGACATAGATTTTCATTATCTTAGAA 6642 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGA 163 ||||||| |||||| ||| |||| ||| ||||||||| Sbjct 6641 CCGTTATAGTTACGACCGTCGTTCACC-GGGCTTCGA 6606 >seq2240 Length=170089 Score = 86.0 bits (94), Expect = 2e-14 Identities = 183/273 (67%), Gaps = 4/273 (1%) Strand=Plus/Minus Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 |||||||||| || || | |||||| ||| || ||| || ||| || || Sbjct 52686 TGCATCTTCATAGACATGTATATTTCATCGAGCCTTTCTCTAAGATAGTGCCAAGATTGT 52627 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 || ||| ||||| || ||||||||| ||||||||||| ||| |||| ||| || Sbjct 52626 TAAGCCTTTCGTATGCGTATAAACTTACCCAACAAGGAATTTACCTATCTTATGACTATT 52567 Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT----AGCTAACC 187 || |||| || || | || | ||||||||| |||| ||| | | || || | || Sbjct 52566 ATAGTTATGGTCGTCATTCATCGGGGCTTCAATCATCGGCTCCTCTTTCATCAGGTCACT 52507 Query 188 CCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTT 247 | ||| |||||| ||||| || ||| |||| ||| |||| | ||| | || Sbjct 52506 AGCTTCATTGACCTTCTGGCACTGGCCAGTTGTCAGCCCCCATACATGGTCTTACAAATT 52447 Query 248 TGCAGAGTGCTGTGTTTTTAATAAACAGTCGCA 280 || ||| |||| ||||| |||| |||| || Sbjct 52446 TGTGAAGTTTTGTGCTTTTAGTAAATAGTCACA 52414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1259823031296