Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq4597 244 3e-62
seq834 174 4e-41
seq11196 141 2e-31
seq3242 127 5e-27
seq14700 114 3e-23
seq157 105 2e-20
seq13076 95.1 3e-17
seq2240 86.0 2e-14
>seq4597
Length=187609
Score = 244 bits (270), Expect = 3e-62
Identities = 301/412 (73%), Gaps = 21/412 (5%)
Strand=Plus/Plus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
||| | |||||||||| | || ||||||||||| | ||| | |||||||||| ||
Sbjct 15581 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 15640
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 15641 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 15700
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186
| |||| ||||| ||||||||||||||||| ||| || | ||||| || | ||
Sbjct 15701 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGTTTCCATTCAAAGCTT----ATAAC--AC 15754
Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246
| | || || |||| |||||||||||| |||| || |||||| || || | |
Sbjct 15755 TTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 15814
Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306
| ||||||| ||||||||||||||||||||||| | |||||||| | | | | |
Sbjct 15815 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 15874
Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366
| | | || || |||| ||||||||||| ||||||| | |
Sbjct 15875 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAGGTTACGGGGTCA 15919
Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418
||||||| ||||||||| | ||||||||||||||| | |||| ||||||
Sbjct 15920 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 15971
>seq834
Length=261106
Score = 174 bits (192), Expect = 4e-41
Identities = 203/273 (74%), Gaps = 6/273 (2%)
Strand=Plus/Minus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
||| | | || ||||| | || ||||||||||| | ||| | |||||||||| ||
Sbjct 94739 TACTCCGTATTTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 94680
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
|| |||| ||||| |||||||||| ||||| |||||||||||||||||||||||||
Sbjct 94679 GTCATTACACCATTTGTGCAGGTCGCTACTTATGTGACAAGGAATTTCGCTACCTTAGGA 94620
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186
|||| ||||| |||||||||||| |||| ||| || | ||||| || | ||
Sbjct 94619 TAGTTAGAGTTACTGCCGCCGTTTACTGGGGTTTCCATTCAAAGCTT----ATAAC--AC 94566
Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246
| | || || |||| ||||||| |||| |||| || |||||| || || | |
Sbjct 94565 TTCTCCTTTTGACTTTCCAGCACCGGCCAGGTGTCAGACTCTATACATCGTGTTACCACT 94506
Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279
| ||||||| |||| |||||||||||||||||
Sbjct 94505 TAGCAGAGTCATGTGCTTTTAATAAACAGTCGC 94473
>seq11196
Length=45469
Score = 141 bits (156), Expect = 2e-31
Identities = 175/237 (74%), Gaps = 8/237 (3%)
Strand=Plus/Minus
Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61
|||| || |||||||||||||| || | ||||||| | ||| |||||| |
Sbjct 11079 GCGGGTAGTCTGCATCTTCACAGACATGTTTATTTCACATATCCTCTCTCCAAGACAGTG 11020
Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121
|| ||| ||||||| ||| || ||| ||||||||||||||||||||| |||||||
Sbjct 11019 CCAAGATCATTACGCCTTTCATGTGAATCGAAACTTACCCGACAAGGAATTTTGCTACCT 10960
Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC-GTTA 180
|||||||||||| ||||||| | ||||| |||||||||||| || | || | | || |
Sbjct 10959 TAGGACCGTTATAGTTACGGTCTCCGTTCACCGGGGCTTCGGTCGACGACTCCCCTGTCA 10900
Query 181 GCTAACCCCATCAA-----TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATAC 232
| | |||||| || |||||| ||||| ||||||| |||| ||| ||||
Sbjct 10899 --TCAAGTCATCAACTTCCTTGACCTTCTGGCACTGGGCAGGGGTCATCCCCCATAC 10845
>seq3242
Length=139294
Score = 127 bits (140), Expect = 5e-27
Identities = 122/155 (79%), Gaps = 1/155 (1%)
Strand=Plus/Minus
Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70
||||||||||||| || || ||||||| ||| ||| ||||| ||| ||||
Sbjct 17245 CTGCATCTTCACATACATGTCTATTTCACCGAGCCTCTCTCCAAGACAATGCCCAGATCG 17186
Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130
||||||| ||| ||| |||| |||| ||||||||| |||||||||||||||||||| |
Sbjct 17185 TTACGCC-TTCATGCGGGTCAAAACTAACCCGACAAATAATTTCGCTACCTTAGGACCAT 17127
Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165
||| ||||||||| | |||||| |||| |||| ||
Sbjct 17126 TATAGTTACGGCCACTGTTTACTGGGGTTTCGGTC 17092
>seq14700
Length=25542
Score = 114 bits (126), Expect = 3e-23
Identities = 162/232 (70%), Gaps = 23/232 (10%)
Strand=Plus/Plus
Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254
|| |||||||||||| |||||||||||| ||| |||| | ||| || ||||| |||
Sbjct 14811 TTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAG 14870
Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTACG 314
|||||||||| ||||||||||| |||||||| || ||||| |||
Sbjct 14871 ACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CCCTTTGT 14924
Query 315 GAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCT 374
||| | ||| | ||||||||||||||||||| || |||||||
Sbjct 14925 GAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCG 14967
Query 375 AGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426
|||||||| ||||| |||| || ||| ||||||||||||| | ||||
Sbjct 14968 AGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 15019
>seq157
Length=539842
Score = 105 bits (116), Expect = 2e-20
Identities = 200/294 (68%), Gaps = 4/294 (1%)
Strand=Plus/Minus
Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70
|| |||||||||| || || ||||||| ||| || ||| | ||| || |
Sbjct 425859 CTACATCTTCACATACATGTCTATTTCACCGAGCTTCTCTCCAAGATAATGCCCAGATTG 425800
Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130
|||| || ||| ||| ||| | || ||||| || || ||||||||||||||||||| |
Sbjct 425799 TTACACCTTTCATGCGGGTTGAAATTTACCAGAAAAAAAATTTCGCTACCTTAGGACTAT 425740
Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAG----CTTCGCGTTAGCTAAC 186
||| |||||| | |||| | |||||||||| || | ||| | | || | ||
Sbjct 425739 TATAGTTACGACTATCGTTCATCGGGGCTTCGGTCGTCGGCTCCCTTGTCATAAGGTTAC 425680
Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246
| | ||| ||||| |||||| ||| |||||||| | | |||| | ||| | |
Sbjct 425679 CAACTTCATTGACCTTTCGGCACTGGGTAGGCGTCAGCCTCCATACATGGTCTTACAACT 425620
Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300
|||| ||| ||||||||| |||||| || ||||||| || |||||
Sbjct 425619 TTGCGGAGACATGTGTTTTTGGTAAACAATCATCCGAGCCTGGTTACTACGACC 425566
>seq13076
Length=29684
Score = 95.1 bits (104), Expect = 3e-17
Identities = 80/97 (82%), Gaps = 1/97 (1%)
Strand=Plus/Minus
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
|||||||| || |||||| ||||| ||||||||||||| || |||| || ||||| |
Sbjct 6701 ATCGTTACACCTTTCGTGTGGGTCGAAACTTACCCGACATAGATTTTCATTATCTTAGAA 6642
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGA 163
||||||| |||||| ||| |||| ||| |||||||||
Sbjct 6641 CCGTTATAGTTACGACCGTCGTTCACC-GGGCTTCGA 6606
>seq2240
Length=170089
Score = 86.0 bits (94), Expect = 2e-14
Identities = 183/273 (67%), Gaps = 4/273 (1%)
Strand=Plus/Minus
Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71
|||||||||| || || | |||||| ||| || ||| || ||| || ||
Sbjct 52686 TGCATCTTCATAGACATGTATATTTCATCGAGCCTTTCTCTAAGATAGTGCCAAGATTGT 52627
Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131
|| ||| ||||| || ||||||||| ||||||||||| ||| |||| ||| ||
Sbjct 52626 TAAGCCTTTCGTATGCGTATAAACTTACCCAACAAGGAATTTACCTATCTTATGACTATT 52567
Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT----AGCTAACC 187
|| |||| || || | || | ||||||||| |||| ||| | | || || | ||
Sbjct 52566 ATAGTTATGGTCGTCATTCATCGGGGCTTCAATCATCGGCTCCTCTTTCATCAGGTCACT 52507
Query 188 CCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTT 247
| ||| |||||| ||||| || ||| |||| ||| |||| | ||| | ||
Sbjct 52506 AGCTTCATTGACCTTCTGGCACTGGCCAGTTGTCAGCCCCCATACATGGTCTTACAAATT 52447
Query 248 TGCAGAGTGCTGTGTTTTTAATAAACAGTCGCA 280
|| ||| |||| ||||| |||| |||| ||
Sbjct 52446 TGTGAAGTTTTGTGCTTTTAGTAAATAGTCACA 52414
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1259823031296
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |