Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq4597 259 1e-66 seq834 183 6e-44 seq14700 174 3e-41 seq11196 152 1e-34 seq3242 141 2e-31 seq157 140 7e-31 seq2240 120 6e-25 seq13076 102 2e-19 seq853 77.0 7e-12 >seq4597 Length=187609 Score = 259 bits (286), Expect = 1e-66 Identities = 283/376 (75%), Gaps = 20/376 (5%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 15581 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 15640 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 15641 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 15700 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| |||| || |||| ||| | |||| Sbjct 15701 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGTTTCCATTCAAAGCT--------TATAAC 15752 Query 181 AGATCCCC--TTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || || || || ||||||||||||||||| ||||| ||||||||||| || | | Sbjct 15753 ACTTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 15812 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 15813 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 15872 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| | ||||||||||||||||||||||||| Sbjct 15873 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAGGTTACGGGGTCATTTTGCCGAGTTC 15932 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 15933 CTTCGACATGGTTCTC 15948 >seq834 Length=261106 Score = 183 bits (202), Expect = 6e-44 Identities = 206/276 (75%), Gaps = 10/276 (4%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | | || ||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 94739 TACTCCGTATTTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 94680 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 || |||| || || |||| ||||| ||||| ||||||||||||||||||||||||| Sbjct 94679 GTCATTACACCATTTGTGCAGGTCGCTACTTATGTGACAAGGAATTTCGCTACCTTAGGA 94620 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 |||| |||||| ||||||||||||||||| || |||| ||| | |||| Sbjct 94619 TAGTTAGAGTTACTGCCGCCGTTTACTGGGGTTTCCATTCAAAGCT--------TATAAC 94568 Query 181 AGATCCCC--TTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || || || || |||||||||||| |||| ||||| ||||||||||| || | | Sbjct 94567 ACTTCTCCTTTTGACTTTCCAGCACCGGCCAGGTGTCAGACTCTATACATCGTGTTACCA 94508 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCT 274 ||||||||| | |||| |||| |||||||||||| Sbjct 94507 CTTAGCAGAGTCATGTGCTTTTAATAAACAGTCGCT 94472 >seq14700 Length=25542 Score = 174 bits (192), Expect = 3e-41 Identities = 141/169 (83%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| ||||||| |||| |||||||||||||| || |||||| ||||| |||||| || | Sbjct 14809 CCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGG 14868 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG---GCCTGTCATAGA 303 | ||||||||||||||||||||||||| |||||| || ||||| ||| | || Sbjct 14869 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCTTTGTGAG- 14927 Query 304 CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 14928 GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 14976 >seq11196 Length=45469 Score = 152 bits (168), Expect = 1e-34 Identities = 155/202 (77%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 48 AGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTT 107 |||||||||| | ||| ||||||||||| || | ||| ||||||||||||||||||||| Sbjct 11027 AGACAGTGCCAAGATCATTACGCCTTTCATGTGAATCGAAACTTACCCGACAAGGAATTT 10968 Query 108 CGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTT 167 ||||||||||||||||||||||||||| | ||||| || ||||||| || || || Sbjct 10967 TGCTACCTTAGGACCGTTATAGTTACGGTCTCCGTTCACCGGGGCTTCGGTCGACGACTC 10908 Query 168 CGATTGCTCTAACAGATC----CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTA 223 | | | || ||| |||| |||||| |||| ||||||| |||| | || | Sbjct 10907 CCCTGTCATCAAGTCATCAACTTCCTTGACCTTCTGGCACTGGGCAGGGGTCATCCCCCA 10848 Query 224 TACATCGTCTTGCGACTTAGCA 245 ||||| ||||| | |||| ||| Sbjct 10847 TACATGGTCTTACAACTTTGCA 10826 >seq3242 Length=139294 Score = 141 bits (156), Expect = 2e-31 Identities = 121/148 (82%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| || | ||||||||||| || | ||||| |||||| |||||| Sbjct 17243 GCATCTTCACATACATGTCTATTTCACCGAGCCTCTCTCCAAGACAATGCCCAGATCGTT 17184 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||| | |||||||| |||| ||||||||| |||||||||||||||||||| ||| Sbjct 17183 ACGCCTT-CATGCGGGTCAAAACTAACCCGACAAATAATTTCGCTACCTTAGGACCATTA 17125 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTT 154 ||||||||||| | ||||||||||| || Sbjct 17124 TAGTTACGGCCACTGTTTACTGGGGTTT 17097 >seq157 Length=539842 Score = 140 bits (154), Expect = 7e-31 Identities = 193/269 (72%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 8 CATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTA 67 ||||||||| || | ||||||||||| | | ||| | |||||| || |||| Sbjct 425856 CATCTTCACATACATGTCTATTTCACCGAGCTTCTCTCCAAGATAATGCCCAGATTGTTA 425797 Query 68 CGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 127 | |||||| ||||||| | || ||||| || || ||||||||||||||||||| |||| Sbjct 425796 CACCTTTCATGCGGGTTGAAATTTACCAGAAAAAAAATTTCGCTACCTTAGGACTATTAT 425737 Query 128 AGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTA-----ACAG 182 ||||||| | |||| | ||||||| || | || || ||| || || Sbjct 425736 AGTTACGACTATCGTTCATCGGGGCTTCGGTCGTCGGC-TCCCTTGTCATAAGGTTACCA 425678 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | | || ||||| | |||| ||| |||||||||| | |||||| ||||| | |||| Sbjct 425677 ACTTCATTGACCTTTCGGCACTGGGTAGGCGTCAGCCTCCATACATGGTCTTACAACTTT 425618 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTC 271 || || || ||||||||||||||||| || Sbjct 425617 GCGGAGACATGTGTTTTTGGTAAACAATC 425589 >seq2240 Length=170089 Score = 120 bits (132), Expect = 6e-25 Identities = 231/334 (69%), Gaps = 10/334 (3%) Strand=Plus/Minus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 |||||| |||| || | | ||| |||||| | || |||| ||||||||| | || Sbjct 52665 ATTTCATCGAGCCTTTCTCTAAGATAGTGCCAAGATTGTTAAGCCTTTCGTATGCGTATA 52606 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 146 ||||||||| ||||||||||| ||| |||| ||| ||||||||| || || | || | Sbjct 52605 AACTTACCCAACAAGGAATTTACCTATCTTATGACTATTATAGTTATGGTCGTCATTCAT 52546 Query 147 TGGGGCTTAAGTTCACTGCTTCGATTGC-TC---TAAC-AGATCCCCTTAACCTTCCAGC 201 ||||||| | | | ||| | || | || | || || | | || |||||| || Sbjct 52545 CGGGGCTTCAATCATCGGCTCCTCTTTCATCAGGTCACTAGCT-TCATTGACCTTCTGGC 52487 Query 202 ACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTG 261 || || ||| |||||| || |||||| ||||| | | || | | |||| |||| Sbjct 52486 ACTGGCCAGTTGTCAGCCCCCATACATGGTCTTACAAATTTGTGAAGTTTTGTGCTTTTA 52427 Query 262 GTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGAC---AGGCACCCCTTCTC 318 ||||| |||| | | || | || | | || || | | | ||| ||| ||||| Sbjct 52426 GTAAATAGTCACAAGAGCATGGTCAATATGACC-CTCTTTGTCAGGAGGTACCTTTTCTC 52368 Query 319 CCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || ||||||| |||| |||||| ||||||||||| Sbjct 52367 CCGAAGTTACAGGGTTATTTTGTCGAGTTCCTTA 52334 >seq13076 Length=29684 Score = 102 bits (112), Expect = 2e-19 Identities = 79/94 (84%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 57 CCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTT 116 ||| |||||||| ||||||||| |||||| ||||||||||||| || |||| || ||| Sbjct 6705 CCAGATCGTTACACCTTTCGTGTGGGTCGAAACTTACCCGACATAGATTTTCATTATCTT 6646 Query 117 AGGACCGTTATAGTTACGGCCGCCGTTTACTGGG 150 || ||||||||||||||| ||| |||| || ||| Sbjct 6645 AGAACCGTTATAGTTACGACCGTCGTTCACCGGG 6612 >seq853 Length=280542 Score = 77.0 bits (84), Expect = 7e-12 Identities = 77/98 (79%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 258 TTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC---TGTCATAGACAGGCACCCCT 314 ||||||||||||||| ||||||| || ||||| || | | || |||||||||| Sbjct 254984 TTTGGTAAACAGTCGTCTGGGCCTGGTCACTGCGACCCCCTTTGTGAGG-AGGCACCCCT 255042 Query 315 TCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||| ||||| ||||| ||||||| ||||| |||| Sbjct 255043 TCTCCCGAAGTTGCGGGGCTATTTTGCTGAGTTACTTA 255080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061576767488