Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq13728 122 2e-25 seq11196 120 6e-25 seq834 105 1e-20 seq2089 98.7 2e-18 seq4982 91.5 3e-16 seq420 87.8 4e-15 seq90 82.4 1e-13 >seq13728 Length=26268 Score = 122 bits (134), Expect = 2e-25 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | || ||| ||||||| || ||||||| ||||||||||| Sbjct 2406 GGGACAGTCTCAGATAGACAATTTTTATGGGGCGTAGGCTTCCCAAAAGGTAACGGAGGC 2465 Query 171 GCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| ||| ||| || | | |||||||||||| ||||| Sbjct 2466 GTGCAAAGGTTTCCTCGAGCC-GGACAGAGATTGGCCTTTGAGTGCAAAGGCAGAAGGGA 2524 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | | | | || | || ||||||||||||| ||| ||||||| ||| Sbjct 2525 GCTTGACTGCAAGATTCCCCCGTTGAACATGGACGAAAGTCGGCTTTAGTGATCCGACGG 2584 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAA 323 ||| ||||| || ||||||||||| ||||||||| Sbjct 2585 TGCCGAATGAAAGGGCCGTCGCTCAACGGATAAA 2618 >seq11196 Length=45469 Score = 120 bits (132), Expect = 6e-25 Identities = 152/204 (75%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AGCTTGGATG 196 ||||||| |||||||||| ||||| | | ||||| | |||| |||| ||| | Sbjct 11284 TGGGGCGTAGGCCTCCCAAAAGGTAACATCAGTGTGCAAAGGTTTCCTCGAGCT-GGA-G 11341 Query 197 GAAACCATGCGCACA-GTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTA 255 ||| || | || ||||||| ||||||||| | |||||||| | |||| | || Sbjct 11342 GAAGATTGGCCCTCAAGTGCAAAAGCAAAAGGGAGCTTGACTGCAAGACCCACCCATCGT 11401 Query 256 GCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGA 315 ||||||||||||||||| |||||||||| | ||||| | ||||| || |||||||| | Sbjct 11402 GCAGGGACGAAAGTCGGCCTTAATGATCAGACGGTGTCAAGTGGAAGGGTCGTCGCTCAA 11461 Query 316 CGGATAAAAGCTACCCTGGGGATA 339 | |||||||| ||| || || ||| Sbjct 11462 CAGATAAAAGTTACACTAGGAATA 11485 >seq834 Length=261106 Score = 105 bits (116), Expect = 1e-20 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 94910 GGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGT 94969 Query 171 GCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 | | ||| || |||| ||| ||| | || || | || || | ||| | Sbjct 94970 GTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCCT 95024 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| | Sbjct 95025 GCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAG 95084 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 95085 TCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 95134 >seq2089 Length=176640 Score = 98.7 bits (108), Expect = 2e-18 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 108 GACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGA 167 || |||||||| |||| | |||||| || |||| ||||| |||| |||||||| Sbjct 11906 GAAGGGACAGTCTCAGGTAGACAGTTTTTATGAGGCGTAGGCCTCTCAAAAGGTAACGGA 11965 Query 168 GGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGG 227 |||| ||||| | | | | |||| ||| | | |||| ||||||| |||| Sbjct 11966 GGCGTGCAAAGGTTTCTTAGGGCTGGACGGAGATTGACCCTTGAGTGGAAAGGCAGAAGG 12025 Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287 | | |||||||| | | || | ||| |||| ||||||| |||| |||| |||| || | Sbjct 12026 GAGCTTGACTGCAAGATCCACCCGTCGAGCAACGACGAAATTCGGTCTTAGTGATTCGAC 12085 Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329 | | |||| ||| | ||| |||| |||||| |||| ||| Sbjct 12086 GATATCGAATAGAAGAGTCGTTGCTCAACGGATTAAAGTTAC 12127 >seq4982 Length=105844 Score = 91.5 bits (100), Expect = 3e-16 Identities = 130/183 (71%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| ||||| |||| || |||||||||| |||| ||||| Sbjct 30199 GGGACAGTCTCAGAT----AGTTTTTATGGGACGTAGGCCTCCCAAAAGATAACAGAGGC 30144 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | ||||||| |||||| |||| ||| | | | ||||||||||||| ||||| | Sbjct 30143 GTGCAAAGATTTCCTCAGGCTGGACGGAGATCGACCCTTCAGTGCAAAGGCAGAAGGGAG 30084 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||| | | |||| | |||| || || ||| ||||| | ||| ||||| | | || Sbjct 30083 CTTGACTACAAGACCCACCAGTCGAGTAGAGACCAAAGTTAGCCTTGGTGATCTGACAGT 30024 Query 291 GCT 293 ||| Sbjct 30023 GCT 30021 >seq420 Length=335034 Score = 87.8 bits (96), Expect = 4e-15 Identities = 148/213 (69%), Gaps = 16/213 (8%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| || ||||| ||||||| ||| |||| ||||||||||| Sbjct 66983 GGGACAGTCTCAGGTGGATAGTTTCTGTGGGGCGTAGGCCCTTCAAAAGGTAACGGAGGC 67042 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | ||||| | ||| || || | || |||||||||||| ||||| | Sbjct 67043 GTGCAAAGGTTTCCT---------TGT---CCCT---CA-AGTGCAAAGGCAGAAGGGAG 67086 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||||| | | || | | | ||||||| |||||||| |||| |||||| || || Sbjct 67087 CTTGACTGCAAGAACCACCTTTTGATCAGGGACAAAAGTCGGCCTTAGTGATCCTGCAGT 67146 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAA 323 | || ||||| | | ||||||| || |||||| Sbjct 67147 ACCGAGTGGAAGGTCTGTCGCTCTACAGATAAA 67179 >seq90 Length=678761 Score = 82.4 bits (90), Expect = 1e-13 Identities = 86/113 (76%), Gaps = 5/113 (4%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||| | | |||||||| | | || | || |||||||||||||||| Sbjct 386905 AGTGCAAAGGCAGAAGAGAGCTTGACTGCAAGATCCGCCCTTCGAGCAGGGACGAAAGTC 386964 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAA 323 ||||||||| |||||||||| || || |||||||| || ||||| Sbjct 386965 -----CAATGATCCGATGGTGCTGAATAAAAGGGTCGTCGCTCAACAAATAAA 387012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981638757888