Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq13728 122 2e-25
seq11196 120 6e-25
seq834 105 1e-20
seq2089 98.7 2e-18
seq4982 91.5 3e-16
seq420 87.8 4e-15
seq90 82.4 1e-13
>seq13728
Length=26268
Score = 122 bits (134), Expect = 2e-25
Identities = 157/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | || ||| ||||||| || ||||||| |||||||||||
Sbjct 2406 GGGACAGTCTCAGATAGACAATTTTTATGGGGCGTAGGCTTCCCAAAAGGTAACGGAGGC 2465
Query 171 GCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| ||| ||| || | | |||||||||||| |||||
Sbjct 2466 GTGCAAAGGTTTCCTCGAGCC-GGACAGAGATTGGCCTTTGAGTGCAAAGGCAGAAGGGA 2524
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | | | | || | || ||||||||||||| ||| ||||||| |||
Sbjct 2525 GCTTGACTGCAAGATTCCCCCGTTGAACATGGACGAAAGTCGGCTTTAGTGATCCGACGG 2584
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAA 323
||| ||||| || ||||||||||| |||||||||
Sbjct 2585 TGCCGAATGAAAGGGCCGTCGCTCAACGGATAAA 2618
>seq11196
Length=45469
Score = 120 bits (132), Expect = 6e-25
Identities = 152/204 (75%), Gaps = 4/204 (2%)
Strand=Plus/Plus
Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AGCTTGGATG 196
||||||| |||||||||| ||||| | | ||||| | |||| |||| ||| |
Sbjct 11284 TGGGGCGTAGGCCTCCCAAAAGGTAACATCAGTGTGCAAAGGTTTCCTCGAGCT-GGA-G 11341
Query 197 GAAACCATGCGCACA-GTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTA 255
||| || | || ||||||| ||||||||| | |||||||| | |||| | ||
Sbjct 11342 GAAGATTGGCCCTCAAGTGCAAAAGCAAAAGGGAGCTTGACTGCAAGACCCACCCATCGT 11401
Query 256 GCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGA 315
||||||||||||||||| |||||||||| | ||||| | ||||| || |||||||| |
Sbjct 11402 GCAGGGACGAAAGTCGGCCTTAATGATCAGACGGTGTCAAGTGGAAGGGTCGTCGCTCAA 11461
Query 316 CGGATAAAAGCTACCCTGGGGATA 339
| |||||||| ||| || || |||
Sbjct 11462 CAGATAAAAGTTACACTAGGAATA 11485
>seq834
Length=261106
Score = 105 bits (116), Expect = 1e-20
Identities = 162/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 94910 GGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGGT 94969
Query 171 GCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229
| | ||| || |||| ||| ||| | || || | || || | ||| |
Sbjct 94970 GTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCCT 95024
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| |
Sbjct 95025 GCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGAG 95084
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 95085 TCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 95134
>seq2089
Length=176640
Score = 98.7 bits (108), Expect = 2e-18
Identities = 155/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 108 GACGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGA 167
|| |||||||| |||| | |||||| || |||| ||||| |||| ||||||||
Sbjct 11906 GAAGGGACAGTCTCAGGTAGACAGTTTTTATGAGGCGTAGGCCTCTCAAAAGGTAACGGA 11965
Query 168 GGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGG 227
|||| ||||| | | | | |||| ||| | | |||| ||||||| ||||
Sbjct 11966 GGCGTGCAAAGGTTTCTTAGGGCTGGACGGAGATTGACCCTTGAGTGGAAAGGCAGAAGG 12025
Query 228 GTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGC 287
| | |||||||| | | || | ||| |||| ||||||| |||| |||| |||| || |
Sbjct 12026 GAGCTTGACTGCAAGATCCACCCGTCGAGCAACGACGAAATTCGGTCTTAGTGATTCGAC 12085
Query 288 GGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTAC 329
| | |||| ||| | ||| |||| |||||| |||| |||
Sbjct 12086 GATATCGAATAGAAGAGTCGTTGCTCAACGGATTAAAGTTAC 12127
>seq4982
Length=105844
Score = 91.5 bits (100), Expect = 3e-16
Identities = 130/183 (71%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| ||||| |||| || |||||||||| |||| |||||
Sbjct 30199 GGGACAGTCTCAGAT----AGTTTTTATGGGACGTAGGCCTCCCAAAAGATAACAGAGGC 30144
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230
| ||||||| |||||| |||| ||| | | | ||||||||||||| ||||| |
Sbjct 30143 GTGCAAAGATTTCCTCAGGCTGGACGGAGATCGACCCTTCAGTGCAAAGGCAGAAGGGAG 30084
Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290
|||||| | | |||| | |||| || || ||| ||||| | ||| ||||| | | ||
Sbjct 30083 CTTGACTACAAGACCCACCAGTCGAGTAGAGACCAAAGTTAGCCTTGGTGATCTGACAGT 30024
Query 291 GCT 293
|||
Sbjct 30023 GCT 30021
>seq420
Length=335034
Score = 87.8 bits (96), Expect = 4e-15
Identities = 148/213 (69%), Gaps = 16/213 (8%)
Strand=Plus/Plus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| || ||||| ||||||| ||| |||| |||||||||||
Sbjct 66983 GGGACAGTCTCAGGTGGATAGTTTCTGTGGGGCGTAGGCCCTTCAAAAGGTAACGGAGGC 67042
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230
| ||||| | ||| || || | || |||||||||||| ||||| |
Sbjct 67043 GTGCAAAGGTTTCCT---------TGT---CCCT---CA-AGTGCAAAGGCAGAAGGGAG 67086
Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290
|||||||| | | || | | | ||||||| |||||||| |||| |||||| || ||
Sbjct 67087 CTTGACTGCAAGAACCACCTTTTGATCAGGGACAAAAGTCGGCCTTAGTGATCCTGCAGT 67146
Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAA 323
| || ||||| | | ||||||| || ||||||
Sbjct 67147 ACCGAGTGGAAGGTCTGTCGCTCTACAGATAAA 67179
>seq90
Length=678761
Score = 82.4 bits (90), Expect = 1e-13
Identities = 86/113 (76%), Gaps = 5/113 (4%)
Strand=Plus/Plus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||||||||||| ||| | | |||||||| | | || | || ||||||||||||||||
Sbjct 386905 AGTGCAAAGGCAGAAGAGAGCTTGACTGCAAGATCCGCCCTTCGAGCAGGGACGAAAGTC 386964
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAA 323
||||||||| |||||||||| || || |||||||| || |||||
Sbjct 386965 -----CAATGATCCGATGGTGCTGAATAAAAGGGTCGTCGCTCAACAAATAAA 387012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981638757888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |