Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq4597 107 2e-21
seq834 86.0 7e-15
>seq4597
Length=187609
Score = 107 bits (118), Expect = 2e-21
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || |||| || |||||||||| || | | ||||||||| |
Sbjct 15556 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 15615
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| |||||||||||||||||||| ||||| |
Sbjct 15616 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 15675
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||| ||||
Sbjct 15676 GACAAGGAATTTCGCTACCTTAGGACAGTTA 15706
>seq834
Length=261106
Score = 86.0 bits (94), Expect = 7e-15
Identities = 107/151 (71%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || |||| || | || ||||| || | | ||||||||| |
Sbjct 94764 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGTATTTTCACGGAGAATTCAATTTCACCG 94705
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| ||||||||| |||||||||| |||||
Sbjct 94704 GGTCCATGTCGGAGACAGCGGGGCAGTCATTACACCATTTGTGCAGGTCGCTACTTATGT 94645
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||| ||||
Sbjct 94644 GACAAGGAATTTCGCTACCTTAGGATAGTTA 94614
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546789236112
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |