Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq11912 205 2e-50 seq6535 172 1e-40 seq7280 167 5e-39 seq8462 132 1e-28 seq10548 131 4e-28 seq10820 125 2e-26 seq17499 118 2e-24 seq6169 116 8e-24 seq726 113 1e-22 seq23 113 1e-22 seq4128 93.3 9e-17 seq2344 86.0 1e-14 >seq11912 Length=37563 Score = 205 bits (226), Expect = 2e-50 Identities = 168/202 (83%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| |||||| |||| ||||||| |||||||||||||||||||| |||||| Sbjct 34632 CCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCC 34689 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 |||||||||| ||||| |||||| || |||||||||||| |||||||| |||||||||| Sbjct 34690 CACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCG 34749 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCG 196 ||||||| || | ||| | | |||||| |||| |||||| |||||||| ||||| | Sbjct 34750 AAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACT 34809 Query 197 ACCTAGGCTCATCTGATAGCGC 218 || ||||||||| | ||||| Sbjct 34810 ACGCAGGCTCATCAAACAGCGC 34831 >seq6535 Length=80559 Score = 172 bits (190), Expect = 1e-40 Identities = 225/305 (74%), Gaps = 20/305 (7%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||| || ||||| || |||||||||||||||||| || |||||||||| ||||||| Sbjct 14018 CACACGACATTG-CTCTGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTACTGCCTC 13960 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 || ||||||| ||| ||| ||| ||| | |||||| ||||||||||||| |||||||| Sbjct 13959 CCATAGGAGTTTGGGTCGTCTCTTAGTCCAAGTGTGGTTGATCATCCTCTCGGACCAGTT 13900 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| || ||||||| || ||| ||||||||||||||||||| ||| | || | | Sbjct 13899 ACTGATCATCACCTTGGTAAGTTATTGCCTCACCAACTAGCTAATCAGACACGAGCCCCT 13840 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | | || | |||||||| Sbjct 13839 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTCCTCAG-CCTACGGGGTATTAG 13794 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| | ||| | ||| || ||| ||||| ||| || || ||||||| || Sbjct 13793 CAGCCGTTTCCAACTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCATCC 13736 Query 326 GTCCG 330 ||||| Sbjct 13735 GTCCG 13731 >seq7280 Length=76597 Score = 167 bits (184), Expect = 5e-39 Identities = 138/166 (83%), Gaps = 3/166 (2%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||| || ||||| || |||||||||||||||||| || |||||||||||||| | | Sbjct 49641 CACACGACATTG-CTCTGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGGCCC 49699 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| ||||||||||||| |||| ||||||||||||| |||||| | Sbjct 49700 CCGTAGGAGTCTGGGT--TGTCTCAGTTCCAATGTGGTTGATCATCCTCTCGGACCAGCT 49757 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 || |||| ||| |||||| ||| ||| |||||| |||||||||||| Sbjct 49758 ACTGATCATCGTCTTGGTAAGCTATTGCCTCACTAACTAGCTAATC 49803 Score = 89.7 bits (98), Expect = 1e-15 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 105 CGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTG 164 ||||| ||||| |||||| ||| |||||||||||||||| ||| |||| |||| || Sbjct 49572 CGTGTTTCAGTCTCAGTGTAGCTGGTCATCCTCTCAGACCACCTACTGATCATCGCTGTG 49513 Query 165 GTGAGCCATTACCTCACCAACTAGCTAAT 193 || ||| ||| ||||||||||||||||| Sbjct 49512 GTAAGCTATTGTCTCACCAACTAGCTAAT 49484 >seq8462 Length=62912 Score = 132 bits (146), Expect = 1e-28 Identities = 133/170 (78%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||| ||||| || ||||||||| ||||||| | || | |||| ||| ||| ||| Sbjct 25456 CACGCGACATTG-CTCTGTCAGGCTTTTTCCCATTG-CGAAAAATCCCTACTACTGTCTC 25513 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||| | ||||||| | | |||||||| || |||||||||| || || | Sbjct 25514 CCGTAGGAGTCTAGGTCGTGTCTTAATCCCAGTGTGGCTAATCATCCTCTTGGATCAACT 25573 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || |||| || ||||| | | | ||| |||||||||||||||||| ||| Sbjct 25574 ACTGATCATCACCTTGATAAACTATTGTCTCACCAACTAGCTAATCAGAC 25623 >seq10548 Length=46761 Score = 131 bits (144), Expect = 4e-28 Identities = 106/127 (83%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||| ||||||| Sbjct 20970 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTACTGCCTC 21028 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 || ||||||| ||| ||| ||| ||| | |||||| ||||||||||||| |||||||| Sbjct 21029 CCATAGGAGTTTGGGTCGTCTCTTAGTCCAAGTGTGGTTGATCATCCTCTCGGACCAGTT 21088 Query 149 ACGGATC 155 || |||| Sbjct 21089 ACTGATC 21095 >seq10820 Length=75845 Score = 125 bits (138), Expect = 2e-26 Identities = 99/118 (84%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||| ||| ||| ||| |||||| ||||||| || ||||| || || |||||| Sbjct 68955 CACGCGACAT--GCTCCGTCAAGCTTTCACCCATTGCGAAAAATTCCTCATTGGTGCCTC 69012 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG 146 ||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||| Sbjct 69013 CCGTAGGAGTCTGGATCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAG 69070 >seq17499 Length=11481 Score = 118 bits (130), Expect = 2e-24 Identities = 105/129 (81%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 |||||| || | || | | ||||| || |||||||||||||||||| || ||||| Sbjct 7175 CCTTCTATCTC-CATGAGACATTG-CTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCT 7118 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 || || |||||||||||||| ||||| |||||||| ||| |||||||| || |||||||| Sbjct 7117 CATTGGTGCCTCCCGTAGGATTCTGGGCCGTGTCTTAGTCCCAGTGTGGCTAATCATCCT 7058 Query 137 CTCAGACCA 145 ||| ||||| Sbjct 7057 CTCGGACCA 7049 >seq6169 Length=85388 Score = 116 bits (128), Expect = 8e-24 Identities = 82/94 (87%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 105 CGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTG 164 ||||||||||| |||||||| ||||||||||||||||| || ||| |||| ||| |||| Sbjct 65944 CGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGATTAGCTACTGATCATCGTCTTG 66003 Query 165 GTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || ||| ||| ||||||||||||||||||| ||| Sbjct 66004 GTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 66037 >seq726 Length=360967 Score = 113 bits (124), Expect = 1e-22 Identities = 121/157 (77%), Gaps = 10/157 (6%) Strand=Plus/Minus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC-------CCATTGTCCAA 69 ||||||| ||| |||||| ||| ||||||||||||||||| ||||||||||| Sbjct 421 CCTTCTT-CACTCACGCGATATTA-CTGGATCAGGCTTTCGCNTTTCGCCCATTGTCCAA 364 Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129 |||||||||||||||| ||||| |||||| | ||||||||| | || ||||| |||| Sbjct 363 GATTCCCCACTGCTGCC-CCCGTGGGAGTCCAGGTCGTGTCTCAATCCCGGTGTGGCTGA 305 Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 |||||| |||| || || | ||| | | ||||| Sbjct 304 TCATCCAAAAAGACTAGCTAAGCATCATTGGATTGGT 268 >seq23 Length=775775 Score = 113 bits (124), Expect = 1e-22 Identities = 104/131 (79%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 68 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACT 127 ||||| ||||||| | ||| |||||||||| || |||| | ||| ||| | || | Sbjct 410912 AATAT--CCCACTGTTACCTACCGTAGGAGTTTGAGTTGTGTATTAGTCCCAATATGGCA 410855 Query 128 GATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTA 187 |||||| |||||||||||| ||| ||| |||||||||| || ||| |||||||||||| Sbjct 410854 GATCATACTCTCAGACCAGCTACTTATCATCGCCTTGGTAAGTTATTGCCTCACCAACTA 410795 Query 188 GCTAATCCGAC 198 ||||||| ||| Sbjct 410794 GCTAATCAGAC 410784 >seq4128 Length=117655 Score = 93.3 bits (102), Expect = 9e-17 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 |||||||| | ||||||| ||||||||||||||||||| || |||| || ||||||| Sbjct 49298 TGTCTCAGCCCTAGTGTGATTGATCATCCTCTCAGACCATCTATTGATCATCACCTTGGT 49357 Query 167 GAGCCATTACCTCACCAACTAGCTAA 192 ||| ||| ||||||||||||| ||| Sbjct 49358 AAGCTATTGCCTCACCAACTAGTTAA 49383 Score = 93.3 bits (102), Expect = 9e-17 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 |||||||| | ||||||| ||||||||||||||||||| || |||| || ||||||| Sbjct 49553 TGTCTCAGCCCTAGTGTGATTGATCATCCTCTCAGACCATCTATTGATCATCACCTTGGT 49612 Query 167 GAGCCATTACCTCACCAACTAGCTAA 192 ||| ||| ||||||||||||| ||| Sbjct 49613 AAGCTATTGCCTCACCAACTAGTTAA 49638 >seq2344 Length=172810 Score = 86.0 bits (94), Expect = 1e-14 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||| ||||| || ||||||||||| | ||||| || |||||||||| ||||||| Sbjct 25017 CACGCGACATTG-CTCCGTCAGGCTTTCGTCTATTGTGAAAAATTCCCCACTACTGCCTC 25075 Query 89 CCGTAGGAGTCTGGACCGTGTC 110 |||||||||||||| |||||| Sbjct 25076 CCGTAGGAGTCTGGGTCGTGTC 25097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071169328640