Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq14700 223 9e-56 seq3752 179 9e-43 seq4725 149 2e-33 seq9820 123 6e-26 seq1580 118 3e-24 seq4597 102 2e-19 seq1517 96.9 9e-18 seq269 75.2 3e-11 >seq14700 Length=25542 Score = 223 bits (246), Expect = 9e-56 Identities = 311/420 (74%), Gaps = 26/420 (6%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 15894 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 15950 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 15951 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 16006 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 16007 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 16064 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAA 243 ||||||| || |||||| | | |||| | ||| ||| |||| |||| ||| Sbjct 16065 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCC----- 16118 Query 244 AGTGGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300 |||||||| ||||||||| || |||||||||| | ||||||||||||||| | Sbjct 16119 --TGGGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGA-C 16175 Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360 |||||||||||| || |||||||||||||||| ||| |||||||||| ||| |||||| Sbjct 16176 GGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATT 16235 Query 361 TAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 16236 TAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 16295 >seq3752 Length=125219 Score = 179 bits (198), Expect = 9e-43 Identities = 277/379 (73%), Gaps = 26/379 (7%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| | ||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 104332 CCACAACTCATAC-GCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 104276 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || | || ||| ||||||||| ||| || |||||| || | || Sbjct 104275 ACCCAAGCTT-CATCATGGTCAT-GGATAGATCACCCAAGTT-CGGGTCCATAAGC-AGT 104220 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 104219 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 104162 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAA 243 ||||||| || |||||| | |||| | ||| ||| |||| || | ||| Sbjct 104161 -GCCACTGCCTATGAGTCGCCGGTTCATTCTTCAACAGGCACGCGGTTAGAGCCC----- 104108 Query 244 AGTGGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300 |||||||| |||| |||| | |||||||||| | ||||||||||||||| | Sbjct 104107 --TGGGCTCCTCCCACTACTTGGGAGATTACGGTTTCATGTTCTATTTCACTCCCCGA-C 104051 Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360 |||||||||||| || |||||||||||||||| ||| |||||||||| ||| ||||| Sbjct 104050 GGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGGGTATT 103991 Query 361 TAGCCTTGGAGGATGGTCC 379 |||||||| | | |||||| Sbjct 103990 TAGCCTTGCAAGGTGGTCC 103972 >seq4725 Length=106527 Score = 149 bits (164), Expect = 2e-33 Identities = 271/377 (72%), Gaps = 21/377 (6%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGT-CCTCCAGTTAGTAGT 67 ||||| |||| ||| | | ||||||||| | | |||| | |||||| ||||| | Sbjct 52186 CCACAACTCAT-CCGTTGA-TTTTTCAACATCAATTGGTTTTGAACCTCCACTTAGTT-T 52130 Query 68 TACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAG 127 ||| || ||| || |||| || ||||||||| ||| | | || ||| || | | Sbjct 52129 CACCTAAGCTT-CATCCTGGTTAT-GGATAGATCACCCAGGAT-CGAGTCCATAAGCAAT 52073 Query 128 CGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCT 185 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 52072 -GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGACTCCAGTGGGTTCCCTTAACCA 52016 Query 186 TTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAG 245 ||||||| || ||| | ||| |||| | ||| ||| ||||||||| | | | Sbjct 52015 A-GCCACTGCCTATGAGTTCCCGACTCATTCTTCAACAGGCACGCAGTCAT--AGCCA-- 51961 Query 246 TGGGCT---CCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 |||||| |||| || ||| | |||||||||| | |||||||||||||| | | | Sbjct 51960 TGGGCTTCTCCCAATGTTTGGGAGTTTACGGTTTCATGTTCTATTTCACTCCC-TGACGG 51902 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 ||||||||||| || |||| ||||||||||| ||| |||||||||| ||| | |||||| Sbjct 51901 GGGTTCTTTTCACCCTTCCTTCACGGTACTACTTCGCTATCGGTCACCCAGGAATATTTA 51842 Query 363 GCCTTGGAGGATGGTCC 379 |||||| | | |||||| Sbjct 51841 GCCTTGCAAGGTGGTCC 51825 >seq9820 Length=55508 Score = 123 bits (136), Expect = 6e-26 Identities = 176/242 (73%), Gaps = 18/242 (7%) Strand=Plus/Plus Query 145 AAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAG 202 |||||||||||| ||||||| |||| | ||| |||| | ||||||| || || Sbjct 36628 AAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA-GCCACTGCCTATGAG 36685 Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAAAGTGGGCTCCCAC--- 256 | || | | | || ||||| ||| |||| |||| ||| |||||||| | Sbjct 36686 TAGCAGGCTCGTTCTACAACAGGCACGCGGTCAGAGCCC-------TGGGCTCCTCCGAT 36738 Query 257 TGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCC 316 |||||| || ||||||| || | ||||||||||| ||| || |||||||||||| || Sbjct 36739 TGCTTGGGAGCTTACGGTTGCATGTTCTATTTCACTACCCGATC-GGGGTTCTTTTCACC 36797 Query 317 TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376 ||| ||||| ||||| ||||||||| |||| || |||||||||||||| | | ||| Sbjct 36798 ATTCTATCACGATACTACTTCACTATCAGTCATCCAATAGTATTTAGCCTTCTAAGGTGG 36857 Query 377 TC 378 || Sbjct 36858 TC 36859 >seq1580 Length=213467 Score = 118 bits (130), Expect = 3e-24 Identities = 118/152 (78%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 269 TACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328 |||||||||| | | ||||||||| ||| | |||||||||||| || ||||||||||| Sbjct 163140 TACGGTTTCATGTTTTATTTCACTTCCCGA-CGGGGGTTCTTTTCACCCTTCCCTCACGG 163082 Query 329 TACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATT 388 ||||| ||| |||||||||| ||| ||||||||||||| | | |||||| | ||| Sbjct 163081 TACTACTTCGCTATCGGTCACCCAGGGGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATT 163022 Query 389 CAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || || || | ||||| || | ||||||| Sbjct 163021 CACACGGGATTCCACGTGCCCCATGCTACTCG 162990 >seq4597 Length=187609 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 17485 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 17543 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 17544 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 17603 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 17604 GTGGTCCCCC 17613 >seq1517 Length=204709 Score = 96.9 bits (106), Expect = 9e-18 Identities = 100/130 (77%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||||| |||||| || ||| |||||| | | ||||| || ||| | |||||||| Sbjct 169413 CTCCCATTGCTTGGGAGCTTACAGTTTCATGTTTTATTTAGCTTCCCGATG-GGGGTTCT 169355 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || || ||||||||||||| ||| ||||| |||| || ||||||||||||| Sbjct 169354 TTTCACCCTTACCTCACGGTACTACTTCGCTATCCGTCACCCAAGAGTATTTAGCCTTAC 169295 Query 370 AGGATGGTCC 379 | | |||||| Sbjct 169294 AAGGTGGTCC 169285 >seq269 Length=437995 Score = 75.2 bits (82), Expect = 3e-11 Identities = 64/79 (81%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||||||| |||||||||||| ||||| || | |||||| ||| | || | || ||| Sbjct 91655 GGGTTCTTTTTACCTTTCCCTCACAGTACTTGTACGCTATCGATCATTGAGGAATACTTA 91596 Query 363 GCCTTGGAGGATGGTCCCC 381 | ||| |||| |||||||| Sbjct 91595 GGCTTAGAGGGTGGTCCCC 91577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1240637908992