Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq14700 223 9e-56
seq3752 179 9e-43
seq4725 149 2e-33
seq9820 123 6e-26
seq1580 118 3e-24
seq4597 102 2e-19
seq1517 96.9 9e-18
seq269 75.2 3e-11
>seq14700
Length=25542
Score = 223 bits (246), Expect = 9e-56
Identities = 311/420 (74%), Gaps = 26/420 (6%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 15894 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 15950
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 15951 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 16006
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 16007 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 16064
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAA 243
||||||| || |||||| | | |||| | ||| ||| |||| |||| |||
Sbjct 16065 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCC----- 16118
Query 244 AGTGGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300
|||||||| ||||||||| || |||||||||| | ||||||||||||||| |
Sbjct 16119 --TGGGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGA-C 16175
Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360
|||||||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||
Sbjct 16176 GGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATT 16235
Query 361 TAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
|||||||| | | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 16236 TAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 16295
>seq3752
Length=125219
Score = 179 bits (198), Expect = 9e-43
Identities = 277/379 (73%), Gaps = 26/379 (7%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| | ||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 104332 CCACAACTCATAC-GCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 104276
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || | || ||| ||||||||| ||| || |||||| || | ||
Sbjct 104275 ACCCAAGCTT-CATCATGGTCAT-GGATAGATCACCCAAGTT-CGGGTCCATAAGC-AGT 104220
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 104219 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 104162
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAA 243
||||||| || |||||| | |||| | ||| ||| |||| || | |||
Sbjct 104161 -GCCACTGCCTATGAGTCGCCGGTTCATTCTTCAACAGGCACGCGGTTAGAGCCC----- 104108
Query 244 AGTGGGCTCC---CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300
|||||||| |||| |||| | |||||||||| | ||||||||||||||| |
Sbjct 104107 --TGGGCTCCTCCCACTACTTGGGAGATTACGGTTTCATGTTCTATTTCACTCCCCGA-C 104051
Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360
|||||||||||| || |||||||||||||||| ||| |||||||||| ||| |||||
Sbjct 104050 GGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGGGTATT 103991
Query 361 TAGCCTTGGAGGATGGTCC 379
|||||||| | | ||||||
Sbjct 103990 TAGCCTTGCAAGGTGGTCC 103972
>seq4725
Length=106527
Score = 149 bits (164), Expect = 2e-33
Identities = 271/377 (72%), Gaps = 21/377 (6%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGT-CCTCCAGTTAGTAGT 67
||||| |||| ||| | | ||||||||| | | |||| | |||||| ||||| |
Sbjct 52186 CCACAACTCAT-CCGTTGA-TTTTTCAACATCAATTGGTTTTGAACCTCCACTTAGTT-T 52130
Query 68 TACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAG 127
||| || ||| || |||| || ||||||||| ||| | | || ||| || | |
Sbjct 52129 CACCTAAGCTT-CATCCTGGTTAT-GGATAGATCACCCAGGAT-CGAGTCCATAAGCAAT 52073
Query 128 CGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCT 185
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 52072 -GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGACTCCAGTGGGTTCCCTTAACCA 52016
Query 186 TTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAG 245
||||||| || ||| | ||| |||| | ||| ||| ||||||||| | | |
Sbjct 52015 A-GCCACTGCCTATGAGTTCCCGACTCATTCTTCAACAGGCACGCAGTCAT--AGCCA-- 51961
Query 246 TGGGCT---CCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302
|||||| |||| || ||| | |||||||||| | |||||||||||||| | | |
Sbjct 51960 TGGGCTTCTCCCAATGTTTGGGAGTTTACGGTTTCATGTTCTATTTCACTCCC-TGACGG 51902
Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362
||||||||||| || |||| ||||||||||| ||| |||||||||| ||| | ||||||
Sbjct 51901 GGGTTCTTTTCACCCTTCCTTCACGGTACTACTTCGCTATCGGTCACCCAGGAATATTTA 51842
Query 363 GCCTTGGAGGATGGTCC 379
|||||| | | ||||||
Sbjct 51841 GCCTTGCAAGGTGGTCC 51825
>seq9820
Length=55508
Score = 123 bits (136), Expect = 6e-26
Identities = 176/242 (73%), Gaps = 18/242 (7%)
Strand=Plus/Plus
Query 145 AAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTTTGCCACTGAAAATAAG 202
|||||||||||| ||||||| |||| | ||| |||| | ||||||| || ||
Sbjct 36628 AAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA-GCCACTGCCTATGAG 36685
Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCA---CCCAACAAAGTGGGCTCCCAC--- 256
| || | | | || ||||| ||| |||| |||| ||| |||||||| |
Sbjct 36686 TAGCAGGCTCGTTCTACAACAGGCACGCGGTCAGAGCCC-------TGGGCTCCTCCGAT 36738
Query 257 TGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCC 316
|||||| || ||||||| || | ||||||||||| ||| || |||||||||||| ||
Sbjct 36739 TGCTTGGGAGCTTACGGTTGCATGTTCTATTTCACTACCCGATC-GGGGTTCTTTTCACC 36797
Query 317 TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376
||| ||||| ||||| ||||||||| |||| || |||||||||||||| | | |||
Sbjct 36798 ATTCTATCACGATACTACTTCACTATCAGTCATCCAATAGTATTTAGCCTTCTAAGGTGG 36857
Query 377 TC 378
||
Sbjct 36858 TC 36859
>seq1580
Length=213467
Score = 118 bits (130), Expect = 3e-24
Identities = 118/152 (78%), Gaps = 1/152 (1%)
Strand=Plus/Minus
Query 269 TACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328
|||||||||| | | ||||||||| ||| | |||||||||||| || |||||||||||
Sbjct 163140 TACGGTTTCATGTTTTATTTCACTTCCCGA-CGGGGGTTCTTTTCACCCTTCCCTCACGG 163082
Query 329 TACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATT 388
||||| ||| |||||||||| ||| ||||||||||||| | | |||||| | |||
Sbjct 163081 TACTACTTCGCTATCGGTCACCCAGGGGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATT 163022
Query 389 CAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
|| || || | ||||| || | |||||||
Sbjct 163021 CACACGGGATTCCACGTGCCCCATGCTACTCG 162990
>seq4597
Length=187609
Score = 102 bits (112), Expect = 2e-19
Identities = 102/130 (78%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312
|||| |||| ||||| | | ||||| ||| ||| ||||||| | ||||||||||
Sbjct 17485 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 17543
Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372
| |||||||||||||||||| || | |||||||||| | || | || |||| ||| ||||
Sbjct 17544 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 17603
Query 373 ATGGTCCCCC 382
|||||||||
Sbjct 17604 GTGGTCCCCC 17613
>seq1517
Length=204709
Score = 96.9 bits (106), Expect = 9e-18
Identities = 100/130 (77%), Gaps = 1/130 (1%)
Strand=Plus/Minus
Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309
|||||| |||||| || ||| |||||| | | ||||| || ||| | ||||||||
Sbjct 169413 CTCCCATTGCTTGGGAGCTTACAGTTTCATGTTTTATTTAGCTTCCCGATG-GGGGTTCT 169355
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369
|||| || || ||||||||||||| ||| ||||| |||| || |||||||||||||
Sbjct 169354 TTTCACCCTTACCTCACGGTACTACTTCGCTATCCGTCACCCAAGAGTATTTAGCCTTAC 169295
Query 370 AGGATGGTCC 379
| | ||||||
Sbjct 169294 AAGGTGGTCC 169285
>seq269
Length=437995
Score = 75.2 bits (82), Expect = 3e-11
Identities = 64/79 (81%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362
|||||||||| |||||||||||| ||||| || | |||||| ||| | || | || |||
Sbjct 91655 GGGTTCTTTTTACCTTTCCCTCACAGTACTTGTACGCTATCGATCATTGAGGAATACTTA 91596
Query 363 GCCTTGGAGGATGGTCCCC 381
| ||| |||| ||||||||
Sbjct 91595 GGCTTAGAGGGTGGTCCCC 91577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1240637908992
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |