Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq6535 156 8e-36 seq7280 138 2e-30 seq11912 136 8e-30 seq8462 120 6e-25 seq23 105 1e-20 seq6169 100 6e-19 seq17499 98.7 2e-18 seq10820 98.7 2e-18 seq726 78.8 2e-12 seq2344 77.0 6e-12 >seq6535 Length=80559 Score = 156 bits (172), Expect = 8e-36 Identities = 211/292 (72%), Gaps = 18/292 (6%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| | || || ||||||| ||||||||| ||||||| |||| || Sbjct 14001 TCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTACTGCCTCCCATAGGAGTTTGGGTCG 13942 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 | ||| ||||| | ||||| | ||| |||||| | || | ||| |||| || |||||| Sbjct 13941 TCTCTTAGTCCAAGTGTGGTTGATCATCCTCTCGGACCAGTTACTGATCATCACCTTGGT 13882 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCT 191 | |||| ||||||||||| |||||| | | ||||||| || | || ||| || Sbjct 13881 AAGTTATTGCCTCACCAACTAGCTAATCAGACACGAGCCCCTCCTCGGGCGGATTCCTCC 13822 Query 192 TTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACG 251 || ||| ||||| | | || | ||||||||| ||||||||| | Sbjct 13821 TT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAACTG 13778 Query 252 TTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCAC 303 || |||| ||| || |||||||| || ||| |||||||| ||||||| ||| Sbjct 13777 TTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCATCCGTCCGTCAC 13727 >seq7280 Length=76597 Score = 138 bits (152), Expect = 2e-30 Identities = 120/148 (81%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| | || || ||||||||||| | |||||||||||||||| Sbjct 49658 TCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGGCCCCCGTAGGAGTCTGGG--T 49715 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||| ||||||||| | ||| |||||| | || ||||| |||| ||| |||||| Sbjct 49716 TGTCTCAGTTCCAATGTGGTTGATCATCCTCTCGGACCAGCTACTGATCATCGTCTTGGT 49775 Query 133 GGGCTATTATCTCACCAACTACCTAATC 160 |||||| ||||| ||||| |||||| Sbjct 49776 AAGCTATTGCCTCACTAACTAGCTAATC 49803 Score = 86.0 bits (94), Expect = 1e-14 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 66 TGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCG 125 |||| ||||| |||||| || ||| || | ||| |||||||| || |||| |||| ||| Sbjct 49577 TGGGTCGTGTTTCAGTCTCAGTGTAGCTGGTCATCCTCTCAGACCACCTACTGATCATCG 49518 Query 126 GCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 |||| |||||| |||||||||||| ||||| | ||||| ||| || Sbjct 49517 CTGTGGTAAGCTATTGTCTCACCAACTAGCTAATTAGACGCGAACCCCTC 49468 >seq11912 Length=37563 Score = 136 bits (150), Expect = 8e-30 Identities = 122/153 (80%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 34654 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 34713 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 34714 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 34773 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||||||||||| Sbjct 34774 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 34806 >seq8462 Length=62912 Score = 120 bits (132), Expect = 6e-25 Identities = 127/166 (77%), Gaps = 1/166 (1%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| ||| ||||||| | || ||||| ||| ||| ||||||||||||||| || || Sbjct 25473 TCAGGCTTTTTCCCATTGCGAAAAATCCCT-ACTACTGTCTCCCGTAGGAGTCTAGGTCG 25531 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||| | ||||| |||||| ||| ||||| | | |||| |||| || |||| | Sbjct 25532 TGTCTTAATCCCAGTGTGGCTAATCATCCTCTTGGATCAACTACTGATCATCACCTTGAT 25591 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178 ||||| |||||||||||| |||||| | ||||||||| || || Sbjct 25592 AAACTATTGTCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTT 25637 >seq23 Length=775775 Score = 105 bits (116), Expect = 1e-20 Identities = 105/135 (78%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCC 93 |||||||| |||| | ||| |||||||||| || | |||| | ||||||||| |||| Sbjct 410912 AATATCCC--ACTGTTACCTACCGTAGGAGTTTGAGTTGTGTATTAGTCCCAATATGGCA 410855 Query 94 GTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTA 153 | ||| ||||||| || ||||| ||| ||| |||||| | |||| ||||||||||| Sbjct 410854 GATCATACTCTCAGACCAGCTACTTATCATCGCCTTGGTAAGTTATTGCCTCACCAACTA 410795 Query 154 CCTAATCGGCCGCGA 168 |||||| | ||||| Sbjct 410794 GCTAATCAGACGCGA 410780 >seq6169 Length=85388 Score = 100 bits (110), Expect = 6e-19 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 ||||||||||||||| |||||| | ||| |||||||| ||||| |||| ||| |||| Sbjct 65944 CGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGATTAGCTACTGATCATCGTCTTG 66003 Query 131 GTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 || |||||| ||||||||||| |||||| | || |||||| || Sbjct 66004 GTAAGCTATTGCCTCACCAACTAGCTAATCAGACGGGAGCCCCTC 66048 >seq17499 Length=11481 Score = 98.7 bits (108), Expect = 2e-18 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| | || || || || || |||||||||||||| ||| Sbjct 7153 GCTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCTCATTGGTGCCTCCCGTAGGATTCT 7094 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTC 105 ||||||||||| ||||||| |||||| ||| |||||| Sbjct 7093 GGGCCGTGTCTTAGTCCCAGTGTGGCTAATCATCCTCTC 7055 >seq10820 Length=75845 Score = 98.7 bits (108), Expect = 2e-18 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||| | |||| ||||||| | || || || || || |||||||||||||||||| Sbjct 68965 GCTCCGTCAAGCTTTCACCCATTGCGAAAAATTCCTCATTGGTGCCTCCCGTAGGAGTCT 69024 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTC 105 || ||||||||||||||| |||||| | ||| |||||| Sbjct 69025 GGATCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTC 69063 >seq726 Length=360967 Score = 78.8 bits (86), Expect = 2e-12 Identities = 68/83 (82%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 19 TTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTC 78 |||| |||||||| ||| || ||||||||||||| ||||| |||||| || |||||||| Sbjct 380 TTTCGCCCATTGTCCAAGATTCCCCACTGCTGCC-CCCGTGGGAGTCCAGGTCGTGTCTC 322 Query 79 AGTCCCAATGTGGCCGTTCAACC 101 | |||| |||||| | ||| || Sbjct 321 AATCCCGGTGTGGCTGATCATCC 299 >seq2344 Length=172810 Score = 77.0 bits (84), Expect = 6e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| | |||||| || || ||||||| ||||||||||||||||||| Sbjct 25028 GCTCCGTCAGGCTTTCGTCTATTGTGAAAAATTCCCCACTACTGCCTCCCGTAGGAGTCT 25087 Query 67 GGGCCGTGTC 76 ||| |||||| Sbjct 25088 GGGTCGTGTC 25097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 997626359808