Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq6535 156 8e-36
seq7280 138 2e-30
seq11912 136 8e-30
seq8462 120 6e-25
seq23 105 1e-20
seq6169 100 6e-19
seq17499 98.7 2e-18
seq10820 98.7 2e-18
seq726 78.8 2e-12
seq2344 77.0 6e-12
>seq6535
Length=80559
Score = 156 bits (172), Expect = 8e-36
Identities = 211/292 (72%), Gaps = 18/292 (6%)
Strand=Plus/Minus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72
||||| |||| ||||||| | || || ||||||| ||||||||| ||||||| |||| ||
Sbjct 14001 TCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTACTGCCTCCCATAGGAGTTTGGGTCG 13942
Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132
| ||| ||||| | ||||| | ||| |||||| | || | ||| |||| || ||||||
Sbjct 13941 TCTCTTAGTCCAAGTGTGGTTGATCATCCTCTCGGACCAGTTACTGATCATCACCTTGGT 13882
Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCT 191
| |||| ||||||||||| |||||| | | ||||||| || | || ||| ||
Sbjct 13881 AAGTTATTGCCTCACCAACTAGCTAATCAGACACGAGCCCCTCCTCGGGCGGATTCCTCC 13822
Query 192 TTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACG 251
|| ||| ||||| | | || | ||||||||| ||||||||| |
Sbjct 13821 TT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAACTG 13778
Query 252 TTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCAC 303
|| |||| ||| || |||||||| || ||| |||||||| ||||||| |||
Sbjct 13777 TTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCATCCGTCCGTCAC 13727
>seq7280
Length=76597
Score = 138 bits (152), Expect = 2e-30
Identities = 120/148 (81%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72
||||| |||| ||||||| | || || ||||||||||| | ||||||||||||||||
Sbjct 49658 TCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGGCCCCCGTAGGAGTCTGGG--T 49715
Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132
||||||||| ||||||||| | ||| |||||| | || ||||| |||| ||| ||||||
Sbjct 49716 TGTCTCAGTTCCAATGTGGTTGATCATCCTCTCGGACCAGCTACTGATCATCGTCTTGGT 49775
Query 133 GGGCTATTATCTCACCAACTACCTAATC 160
|||||| ||||| ||||| ||||||
Sbjct 49776 AAGCTATTGCCTCACTAACTAGCTAATC 49803
Score = 86.0 bits (94), Expect = 1e-14
Identities = 85/110 (77%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 66 TGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCG 125
|||| ||||| |||||| || ||| || | ||| |||||||| || |||| |||| |||
Sbjct 49577 TGGGTCGTGTTTCAGTCTCAGTGTAGCTGGTCATCCTCTCAGACCACCTACTGATCATCG 49518
Query 126 GCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175
|||| |||||| |||||||||||| ||||| | ||||| ||| ||
Sbjct 49517 CTGTGGTAAGCTATTGTCTCACCAACTAGCTAATTAGACGCGAACCCCTC 49468
>seq11912
Length=37563
Score = 136 bits (150), Expect = 8e-30
Identities = 122/153 (80%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| ||||||
Sbjct 34654 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 34713
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||||||||||||||||||| |||||| | ||| || || || |||| ||| | ||
Sbjct 34714 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 34773
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159
|||||| || ||| || ||||||||||||||
Sbjct 34774 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 34806
>seq8462
Length=62912
Score = 120 bits (132), Expect = 6e-25
Identities = 127/166 (77%), Gaps = 1/166 (1%)
Strand=Plus/Plus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72
||||| ||| ||||||| | || ||||| ||| ||| ||||||||||||||| || ||
Sbjct 25473 TCAGGCTTTTTCCCATTGCGAAAAATCCCT-ACTACTGTCTCCCGTAGGAGTCTAGGTCG 25531
Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132
||||| | ||||| |||||| ||| ||||| | | |||| |||| || |||| |
Sbjct 25532 TGTCTTAATCCCAGTGTGGCTAATCATCCTCTTGGATCAACTACTGATCATCACCTTGAT 25591
Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178
||||| |||||||||||| |||||| | ||||||||| || ||
Sbjct 25592 AAACTATTGTCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTT 25637
>seq23
Length=775775
Score = 105 bits (116), Expect = 1e-20
Identities = 105/135 (78%), Gaps = 2/135 (1%)
Strand=Plus/Minus
Query 34 AATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCC 93
|||||||| |||| | ||| |||||||||| || | |||| | ||||||||| ||||
Sbjct 410912 AATATCCC--ACTGTTACCTACCGTAGGAGTTTGAGTTGTGTATTAGTCCCAATATGGCA 410855
Query 94 GTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTA 153
| ||| ||||||| || ||||| ||| ||| |||||| | |||| |||||||||||
Sbjct 410854 GATCATACTCTCAGACCAGCTACTTATCATCGCCTTGGTAAGTTATTGCCTCACCAACTA 410795
Query 154 CCTAATCGGCCGCGA 168
|||||| | |||||
Sbjct 410794 GCTAATCAGACGCGA 410780
>seq6169
Length=85388
Score = 100 bits (110), Expect = 6e-19
Identities = 85/105 (81%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130
||||||||||||||| |||||| | ||| |||||||| ||||| |||| ||| ||||
Sbjct 65944 CGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGATTAGCTACTGATCATCGTCTTG 66003
Query 131 GTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175
|| |||||| ||||||||||| |||||| | || |||||| ||
Sbjct 66004 GTAAGCTATTGCCTCACCAACTAGCTAATCAGACGGGAGCCCCTC 66048
>seq17499
Length=11481
Score = 98.7 bits (108), Expect = 2e-18
Identities = 81/99 (82%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
||| | ||||| |||| ||||||| | || || || || || |||||||||||||| |||
Sbjct 7153 GCTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCTCATTGGTGCCTCCCGTAGGATTCT 7094
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTC 105
||||||||||| ||||||| |||||| ||| ||||||
Sbjct 7093 GGGCCGTGTCTTAGTCCCAGTGTGGCTAATCATCCTCTC 7055
>seq10820
Length=75845
Score = 98.7 bits (108), Expect = 2e-18
Identities = 81/99 (82%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
||| | ||| | |||| ||||||| | || || || || || ||||||||||||||||||
Sbjct 68965 GCTCCGTCAAGCTTTCACCCATTGCGAAAAATTCCTCATTGGTGCCTCCCGTAGGAGTCT 69024
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTC 105
|| ||||||||||||||| |||||| | ||| ||||||
Sbjct 69025 GGATCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTC 69063
>seq726
Length=360967
Score = 78.8 bits (86), Expect = 2e-12
Identities = 68/83 (82%), Gaps = 1/83 (1%)
Strand=Plus/Minus
Query 19 TTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTC 78
|||| |||||||| ||| || ||||||||||||| ||||| |||||| || ||||||||
Sbjct 380 TTTCGCCCATTGTCCAAGATTCCCCACTGCTGCC-CCCGTGGGAGTCCAGGTCGTGTCTC 322
Query 79 AGTCCCAATGTGGCCGTTCAACC 101
| |||| |||||| | ||| ||
Sbjct 321 AATCCCGGTGTGGCTGATCATCC 299
>seq2344
Length=172810
Score = 77.0 bits (84), Expect = 6e-12
Identities = 59/70 (84%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
||| | ||||| |||| | |||||| || || ||||||| |||||||||||||||||||
Sbjct 25028 GCTCCGTCAGGCTTTCGTCTATTGTGAAAAATTCCCCACTACTGCCTCCCGTAGGAGTCT 25087
Query 67 GGGCCGTGTC 76
||| ||||||
Sbjct 25088 GGGTCGTGTC 25097
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 997626359808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |