Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01001634.1
Length=217
Score E
Sequences producing significant alignments: (Bits) Value
seq27 77.0 4e-12
seq19535 75.2 1e-11
seq16027 75.2 1e-11
seq6932 73.4 5e-11
>seq27
Length=1457134
Score = 77.0 bits (84), Expect = 4e-12
Identities = 76/97 (78%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAA 72
|||||| |||||| || | |||| | | |||| |||||||||||||| | || ||
Sbjct 58279 CCAACACAATAGGATCGAAA-TCCTGTGATGTTATCCCATGCTAATGTATACAAGCATAG 58337
Query 73 GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
||||||||||| ||||||||||| |||| |||| ||
Sbjct 58338 GCCTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 58374
Score = 75.2 bits (82), Expect = 1e-11
Identities = 79/103 (77%), Gaps = 1/103 (1%)
Strand=Plus/Plus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAA 72
|||||| |||||| || | |||| | | |||| |||||||||||||| | || ||
Sbjct 32656 CCAACACAATAGGATCGAAA-TCCTGTGATGTTATCCCATGCTAATGTATACAAGCATAG 32714
Query 73 GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115
| || |||||| ||||||||||| ||||| |||| || ||||
Sbjct 32715 GACTACTTTGACCACTCTAATTTCCTCAAAGTAACAGCGCTGG 32757
Score = 75.2 bits (82), Expect = 1e-11
Identities = 76/98 (78%), Gaps = 1/98 (1%)
Strand=Plus/Plus
Query 12 ACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTA 71
||||||| |||||| || | || | | | |||| |||||||||||||| | || ||
Sbjct 52304 ACCAACACAATAGGATCGAAA-TCTTGTGATGTTATCCCATGCTAATGTATACATGCATA 52362
Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
||||||||||| ||||||||||| |||| |||| ||
Sbjct 52363 GGCCTGCTTTGAGCACTCTAATTTCTTCAAAGTAATAG 52400
>seq19535
Length=8387
Score = 75.2 bits (82), Expect = 1e-11
Identities = 76/98 (78%), Gaps = 1/98 (1%)
Strand=Plus/Minus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAA 72
|||||| |||||| | | |||| | | |||| |||||||||||||| | |||||
Sbjct 760 CCAACACAATAGGATTGAAA-TCCTGTGATGTTATCCCATGCTAATGTATACAAGCGTAG 702
Query 73 GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110
|||| |||||| ||||||||||| |||| |||| |||
Sbjct 701 GCCTACTTTGAGCACTCTAATTTCTTCAAAGTAACAGT 664
>seq16027
Length=16755
Score = 75.2 bits (82), Expect = 1e-11
Identities = 76/98 (78%), Gaps = 1/98 (1%)
Strand=Plus/Minus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAA 72
|||||| |||||| | | |||| | | |||| |||||||||||||| | || ||
Sbjct 15265 CCAACACAATAGGATTGAAA-TCCTGTGATGTTATCCCATGCTAATGTATACAAGCATAG 15207
Query 73 GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110
||||||||||| ||||||||||| |||| |||| |||
Sbjct 15206 GCCTGCTTTGAGCACTCTAATTTATTCAAAGTAACAGT 15169
>seq6932
Length=80499
Score = 73.4 bits (80), Expect = 5e-11
Identities = 75/97 (77%), Gaps = 1/97 (1%)
Strand=Plus/Plus
Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAA 72
|||||| |||||| || | |||| | | |||| |||||||||||||| | | |||
Sbjct 62309 CCAACATAATAGGATCGAAA-TCCTGTGATGTTATCCCATGCTAATGTATACAAGTGTAG 62367
Query 73 GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109
||||||||| | ||||||||||| |||| |||| ||
Sbjct 62368 GCCTGCTTTAAGCACTCTAATTTCTTCAAAGTAACAG 62404
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 594753204192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |