Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq27 77.0 4e-12 seq19535 75.2 1e-11 seq16027 75.2 1e-11 seq6932 73.4 5e-11 >seq27 Length=1457134 Score = 77.0 bits (84), Expect = 4e-12 Identities = 76/97 (78%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAA 72 |||||| |||||| || | |||| | | |||| |||||||||||||| | || || Sbjct 58279 CCAACACAATAGGATCGAAA-TCCTGTGATGTTATCCCATGCTAATGTATACAAGCATAG 58337 Query 73 GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 ||||||||||| ||||||||||| |||| |||| || Sbjct 58338 GCCTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 58374 Score = 75.2 bits (82), Expect = 1e-11 Identities = 79/103 (77%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAA 72 |||||| |||||| || | |||| | | |||| |||||||||||||| | || || Sbjct 32656 CCAACACAATAGGATCGAAA-TCCTGTGATGTTATCCCATGCTAATGTATACAAGCATAG 32714 Query 73 GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGG 115 | || |||||| ||||||||||| ||||| |||| || |||| Sbjct 32715 GACTACTTTGACCACTCTAATTTCCTCAAAGTAACAGCGCTGG 32757 Score = 75.2 bits (82), Expect = 1e-11 Identities = 76/98 (78%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 12 ACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTA 71 ||||||| |||||| || | || | | | |||| |||||||||||||| | || || Sbjct 52304 ACCAACACAATAGGATCGAAA-TCTTGTGATGTTATCCCATGCTAATGTATACATGCATA 52362 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 ||||||||||| ||||||||||| |||| |||| || Sbjct 52363 GGCCTGCTTTGAGCACTCTAATTTCTTCAAAGTAATAG 52400 >seq19535 Length=8387 Score = 75.2 bits (82), Expect = 1e-11 Identities = 76/98 (78%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAA 72 |||||| |||||| | | |||| | | |||| |||||||||||||| | ||||| Sbjct 760 CCAACACAATAGGATTGAAA-TCCTGTGATGTTATCCCATGCTAATGTATACAAGCGTAG 702 Query 73 GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 |||| |||||| ||||||||||| |||| |||| ||| Sbjct 701 GCCTACTTTGAGCACTCTAATTTCTTCAAAGTAACAGT 664 >seq16027 Length=16755 Score = 75.2 bits (82), Expect = 1e-11 Identities = 76/98 (78%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAA 72 |||||| |||||| | | |||| | | |||| |||||||||||||| | || || Sbjct 15265 CCAACACAATAGGATTGAAA-TCCTGTGATGTTATCCCATGCTAATGTATACAAGCATAG 15207 Query 73 GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 ||||||||||| ||||||||||| |||| |||| ||| Sbjct 15206 GCCTGCTTTGAGCACTCTAATTTATTCAAAGTAACAGT 15169 >seq6932 Length=80499 Score = 73.4 bits (80), Expect = 5e-11 Identities = 75/97 (77%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGTAA 72 |||||| |||||| || | |||| | | |||| |||||||||||||| | | ||| Sbjct 62309 CCAACATAATAGGATCGAAA-TCCTGTGATGTTATCCCATGCTAATGTATACAAGTGTAG 62367 Query 73 GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 ||||||||| | ||||||||||| |||| |||| || Sbjct 62368 GCCTGCTTTAAGCACTCTAATTTCTTCAAAGTAACAG 62404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594753204192