Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq14700 232 2e-58 seq3724 196 1e-47 seq4597 167 5e-39 seq302 129 1e-27 seq1976 96.9 8e-18 seq7515 80.6 6e-13 seq2578 80.6 6e-13 >seq14700 Length=25542 Score = 232 bits (256), Expect = 2e-58 Identities = 302/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 15278 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 15337 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 15338 GAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 15397 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || || | || | |||| ||| ||||| || || | | Sbjct 15398 ACATTCTCGCTTCCGCTTCGTCTACTCC---CGCTCACGCGGGTGCTTCCCC-CTAAGGC 15453 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 15454 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 15509 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 15510 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 15568 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 15569 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 15628 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 15629 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 15677 Score = 161 bits (178), Expect = 2e-37 Identities = 184/241 (76%), Gaps = 12/241 (5%) Strand=Plus/Plus Query 152 TCACCCGGCAGCTTCACCACTGACACG--ACGCTCCCCTACCCAACCAC----ACAGGTT 205 |||| ||| ||||| || || | || ||||||||||||| | || ||| | Sbjct 23976 TCACGCGGGTGCTTCCCC-CTAAGGCGGAACGCTCCCCTACCGATGCATTTTTACA---T 24031 Query 206 GCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACC 265 ||||||||||||| ||| |||| |||||| | ||| ||||||| | | || || | Sbjct 24032 CCCACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATC 24089 Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 ||||||||||||||||||||||||||| |||||||||| | || |||||||||| ||||| Sbjct 24090 AGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCT 24149 Query 326 ACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385 ||| | | || |||||| ||||||| || |||||||||||||||| ||||| || Sbjct 24150 CTGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGG 24209 Query 386 G 386 | Sbjct 24210 G 24210 >seq3724 Length=128892 Score = 196 bits (216), Expect = 1e-47 Identities = 257/347 (74%), Gaps = 18/347 (5%) Strand=Plus/Plus Query 63 GGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGC 121 ||||||||||| | |||| | | |||||| |||| | || |||||| ||| | Sbjct 63719 GGAACCCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGAC 63778 Query 122 ATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACG- 178 |||||| || ||| || || | || | |||| ||| ||||| || || | || Sbjct 63779 ATTCTCGCTTCCGCTTCGTCTACTCC---CGCTCACGCGGGTGCTTCCCC-CTAAGGCGG 63834 Query 179 -ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||||||||||||| | || ||| | ||||||||||||| ||| |||| ||| Sbjct 63835 AACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-GCC 63890 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| | ||| ||||||| | | || || |||||||||||||||||||||||||||| Sbjct 63891 CCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGG 63949 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||||| Sbjct 63950 TGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGAG 64009 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || |||||||||||||||| ||||| ||| ||||||||||||| Sbjct 64010 CGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGTTGTTTCCCTCTCG 64056 >seq4597 Length=187609 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 16827 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 16883 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 16884 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 16943 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 16944 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 17003 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 17004 GTTTCCCTCTCG 17015 >seq302 Length=505109 Score = 129 bits (142), Expect = 1e-27 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 245 TCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCC 304 ||||||| | | || || |||||||||||||||||||||||||||| |||||||||| Sbjct 107893 TCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCT 107952 Query 305 AAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAG 364 | || |||||| ||| ||||| ||| | | || |||||| ||||||| || |||| Sbjct 107953 AGGCAAACCTCATGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAG 108012 Query 365 GGGCCTTAGCTGATGATCTGG 385 |||||||||||| ||||| || Sbjct 108013 GGGCCTTAGCTGGTGATCCGG 108033 >seq1976 Length=182172 Score = 96.9 bits (106), Expect = 8e-18 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||||||||||||||| ||||| |||| | || ||| || ||| | ||| Sbjct 160312 GTGAGCTATTACGCACTCTTTCAAGGGTGGCTACTTCTAGGCAAACATCTTGGCTATCTC 160253 Query 327 CGCAACTCC-ACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385 || ||||| || |||| | ||| ||| || | | ||||||||| || ||||| | Sbjct 160252 TGC-ACTCCTACCTCCTATATCACCGAGCGGTCATTCAAGGGCCTTAGTTGGTGATCCGA 160194 Query 386 GCTGTTTCCCTCTCG 400 | ||||| ||||||| Sbjct 160193 GTTGTTTTCCTCTCG 160179 >seq7515 Length=70154 Score = 80.6 bits (88), Expect = 6e-13 Identities = 103/141 (73%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 260 TTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGG 319 |||| ||||| ||||||| ||||||||||||| ||| || || | || ||| |||||| Sbjct 40380 TTGATTAGTGAACTATTACACACTCTTTCAAGGGTGGTTG-TTTCTAGAAAACATCCTGG 40322 Query 320 TTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATG 379 | ||| ||| | || || ||| |||| || | ||||||||||||||| || Sbjct 40321 CTATCTCTGCACCCATACCTCTTTTATCACTAAGCGGTTATTTAGGGGCCTTAGCTTGTG 40262 Query 380 ATCTGGGCTGTTTCCCTCTCG 400 ||| | | ||| || |||||| Sbjct 40261 ATCCGAGTTGTATCTCTCTCG 40241 >seq2578 Length=156619 Score = 80.6 bits (88), Expect = 6e-13 Identities = 88/116 (76%), Gaps = 6/116 (5%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 |||| || | || |||| |||| | |||||| |||| || ||| | ||||| | Sbjct 75583 GCTTAGGTGAATCACTTGAGCCTTGATACATTTTCGGTGCCATGGAGATA---GACCAAT 75639 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTC 324 |||||||||||| |||| |||||||||||||||| |||| || | ||||||||| Sbjct 75640 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCGAGCCCACTTTCTGGTTGTC 75695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176687501312