Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01001756.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq784 107 4e-21 seq10775 98.7 2e-18 seq4158 91.5 3e-16 seq2804 89.7 9e-16 seq275 89.7 9e-16 >seq784 Length=268315 Score = 107 bits (118), Expect = 4e-21 Identities = 138/189 (73%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 84 GTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCTTGGTTACCGGGTCGGTTTATCAA 143 |||||||| |||| | ||||| |||||| |||||| |||||||| | |||||| Sbjct 228315 GTCGGAGCCCGCGGGATCACGCTTGGGGATGGGGTCTTGGTCACCGGGTCTGAGTATCAA 228374 Query 144 GGGGCCCCACATGGGTTCTTCTTAGTAAATAACAACAAAAAGGATGGGCAAAATAGTAAA 203 || | || || ||||| | | | || | | ||| |||| ||||||| | ||||| Sbjct 228375 GGTGGACCGCACGGGTTTTACATGGTGGAAATCAA-----AGGA-GGGCAAACTGGTAAA 228428 Query 204 TTGACAAAGATTGATGTTCCTGATGAATTTTCTGGATTTGTGCAATCTGGATGCTGTGTG 263 ||| || || |||| |||||||| || ||||| ||||| || || || || |||||| Sbjct 228429 TTGGAGAAAATCAATGTGCCTGATGAGTTATCTGGGTTTGTCCAGTCAGGCTGTTGTGTG 228488 Query 264 GAGATCTGA 272 ||||||||| Sbjct 228489 GAGATCTGA 228497 >seq10775 Length=43713 Score = 98.7 bits (108), Expect = 2e-18 Identities = 173/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 22 GTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGGGAGAGTCCGACCCGAATGTTA 81 |||| || | || ||| | || || |||| | |||| | || ||||| ||| Sbjct 1203 GTGTTAGGATTGGAAAAGACGGGAAATTGATAGACTGGGCGGGGTTGGACCCTGTCGTTC 1144 Query 82 AAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCTTGGTTACCGGGTCGGTTTATC 141 ||||||||| |||| | || || ||| || ||||||||||||||||| |||| Sbjct 1143 GAGTCGGAGCCCGCGGGATTACGCTCGGGGATCGGGTCTTGGTTACCGGGTCGGAATATC 1084 Query 142 AAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAACAAAAAGGATGGGCAAAATAGTA 201 |||| | || || ||||| | | | || | | ||| |||| ||||||| | ||| Sbjct 1083 AAGGTGGACCGCACGGGTTTTACATGGTGGAAATCAA-----AGGA-GGGCAAACTGGTA 1030 Query 202 AATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGATTTGTGCAATCTGGATGCTGTG 261 |||||| || | | || |||||||| || ||||| || || | || || || |||| Sbjct 1029 AATTGAAGAAACTCAACGTGCCTGATGAGTTCTCTGGGTTAGTCCTGTCAGGCTGTTGTG 970 Query 262 TGGAGATCTGA 272 ||||||||||| Sbjct 969 TGGAGATCTGA 959 >seq4158 Length=118308 Score = 91.5 bits (100), Expect = 3e-16 Identities = 152/219 (69%), Gaps = 13/219 (6%) Strand=Plus/Plus Query 57 TGGGGAGAGTCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGG- 115 |||| |||| |||||||| ||| |||||||||||||| | ||||| | || Sbjct 70833 TGGGCAGAGATCGACCCGACCGTTCGGGTCGGAGCATGCGGGATCAGCCTTGGAGGAGGA 70892 Query 116 --GACCTTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGT--AA 171 | ||||| |||||||||| |||||| | || || | ||||| | | || || Sbjct 70893 CGGGTTTTGGTGACCGGGTCGGAGTATCAATGTGCACCGCTCGGGTTTTACACTGTGGAA 70952 Query 172 ATAACAACAAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAAT 231 || | |||| |||||||||||||||||| ||| | | || ||| |||| | Sbjct 70953 ATGA--------AGGAAGGGCAAAATAGTAAATTGGTAAAACTCAACGTGCCTAATGAGT 71004 Query 232 TTTCTGGATTTGTGCAATCTGGATGCTGTGTGGAGATCT 270 ||||||| ||||| ||||| || |||| || || |||| Sbjct 71005 TTTCTGGCTTTGTCCAATCGGGCTGCTATGCAGAAATCT 71043 >seq2804 Length=157078 Score = 89.7 bits (98), Expect = 9e-16 Identities = 112/154 (73%), Gaps = 6/154 (4%) Strand=Plus/Minus Query 119 CTTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAA 178 ||||||||||||||| | || || || | || |||| ||||| | | || | | || Sbjct 35596 CTTGGTTACCGGGTCAGAGTACCAGGGTGGACCTCATGAGTTCTACATGGTGGAAACCAT 35537 Query 179 CAAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGG 238 || ||| | |||| ||||||||| || || |||| ||||||| |||||||| Sbjct 35536 ------GGGTGGACGAAATGGTAAATTGAAGAAAATCAATGTGCCTGATGTGTTTTCTGG 35483 Query 239 ATTTGTGCAATCTGGATGCTGTGTGGAGATCTGA 272 ||||| || ||||| ||||||||||| || ||| Sbjct 35482 GTTTGTCCAGTCTGGTTGCTGTGTGGAAATATGA 35449 >seq275 Length=395397 Score = 89.7 bits (98), Expect = 9e-16 Identities = 150/217 (69%), Gaps = 9/217 (4%) Strand=Plus/Plus Query 57 TGGGGAGAGTCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGG- 115 |||| |||| ||||||| ||| ||||||||||| || | | ||||| | || Sbjct 320434 TGGGCAGAGATCGACCCGGCCGTTCGGGTCGGAGCATGTGGAATCAACCTTGGAGGAGGT 320493 Query 116 --GACCTTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAAT 173 | |||||||| ||||||| |||||||| || || |||||| | | ||| Sbjct 320494 CGGGTTTTGGTTACGGGGTCGGAGTATCAAGGCGCACCGTTTGGGTTTTAC------AAT 320547 Query 174 AACAACAAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTT 233 | | ||||| ||||||||||||| ||||| || | |||| ||| ||| ||| Sbjct 320548 GTGGAAATGAAGGAAGGGCAAAATAGTACATTGAAGAAACTCAATGTGCCTATTGAGTTT 320607 Query 234 TCTGGATTTGTGCAATCTGGATGCTGTGTGGAGATCT 270 ||||| ||||| ||||| || |||| || || |||| Sbjct 320608 TCTGGGTTTGTCCAATCGGGCTGCTATGCAGAAATCT 320644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917688350208