Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01001756.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq784 107 4e-21
seq10775 98.7 2e-18
seq4158 91.5 3e-16
seq2804 89.7 9e-16
seq275 89.7 9e-16
>seq784
Length=268315
Score = 107 bits (118), Expect = 4e-21
Identities = 138/189 (73%), Gaps = 6/189 (3%)
Strand=Plus/Plus
Query 84 GTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCTTGGTTACCGGGTCGGTTTATCAA 143
|||||||| |||| | ||||| |||||| |||||| |||||||| | ||||||
Sbjct 228315 GTCGGAGCCCGCGGGATCACGCTTGGGGATGGGGTCTTGGTCACCGGGTCTGAGTATCAA 228374
Query 144 GGGGCCCCACATGGGTTCTTCTTAGTAAATAACAACAAAAAGGATGGGCAAAATAGTAAA 203
|| | || || ||||| | | | || | | ||| |||| ||||||| | |||||
Sbjct 228375 GGTGGACCGCACGGGTTTTACATGGTGGAAATCAA-----AGGA-GGGCAAACTGGTAAA 228428
Query 204 TTGACAAAGATTGATGTTCCTGATGAATTTTCTGGATTTGTGCAATCTGGATGCTGTGTG 263
||| || || |||| |||||||| || ||||| ||||| || || || || ||||||
Sbjct 228429 TTGGAGAAAATCAATGTGCCTGATGAGTTATCTGGGTTTGTCCAGTCAGGCTGTTGTGTG 228488
Query 264 GAGATCTGA 272
|||||||||
Sbjct 228489 GAGATCTGA 228497
>seq10775
Length=43713
Score = 98.7 bits (108), Expect = 2e-18
Identities = 173/251 (69%), Gaps = 6/251 (2%)
Strand=Plus/Minus
Query 22 GTGTAGGGGTGGGTAAAAATGGAAATTTGAAATGTTGGGGAGAGTCCGACCCGAATGTTA 81
|||| || | || ||| | || || |||| | |||| | || ||||| |||
Sbjct 1203 GTGTTAGGATTGGAAAAGACGGGAAATTGATAGACTGGGCGGGGTTGGACCCTGTCGTTC 1144
Query 82 AAGTCGGAGCATGCGGTGTGGATCTTGGTGATGGGACCTTGGTTACCGGGTCGGTTTATC 141
||||||||| |||| | || || ||| || ||||||||||||||||| ||||
Sbjct 1143 GAGTCGGAGCCCGCGGGATTACGCTCGGGGATCGGGTCTTGGTTACCGGGTCGGAATATC 1084
Query 142 AAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAACAAAAAGGATGGGCAAAATAGTA 201
|||| | || || ||||| | | | || | | ||| |||| ||||||| | |||
Sbjct 1083 AAGGTGGACCGCACGGGTTTTACATGGTGGAAATCAA-----AGGA-GGGCAAACTGGTA 1030
Query 202 AATTGACAAAGATTGATGTTCCTGATGAATTTTCTGGATTTGTGCAATCTGGATGCTGTG 261
|||||| || | | || |||||||| || ||||| || || | || || || ||||
Sbjct 1029 AATTGAAGAAACTCAACGTGCCTGATGAGTTCTCTGGGTTAGTCCTGTCAGGCTGTTGTG 970
Query 262 TGGAGATCTGA 272
|||||||||||
Sbjct 969 TGGAGATCTGA 959
>seq4158
Length=118308
Score = 91.5 bits (100), Expect = 3e-16
Identities = 152/219 (69%), Gaps = 13/219 (6%)
Strand=Plus/Plus
Query 57 TGGGGAGAGTCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGG- 115
|||| |||| |||||||| ||| |||||||||||||| | ||||| | ||
Sbjct 70833 TGGGCAGAGATCGACCCGACCGTTCGGGTCGGAGCATGCGGGATCAGCCTTGGAGGAGGA 70892
Query 116 --GACCTTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGT--AA 171
| ||||| |||||||||| |||||| | || || | ||||| | | || ||
Sbjct 70893 CGGGTTTTGGTGACCGGGTCGGAGTATCAATGTGCACCGCTCGGGTTTTACACTGTGGAA 70952
Query 172 ATAACAACAAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAAT 231
|| | |||| |||||||||||||||||| ||| | | || ||| |||| |
Sbjct 70953 ATGA--------AGGAAGGGCAAAATAGTAAATTGGTAAAACTCAACGTGCCTAATGAGT 71004
Query 232 TTTCTGGATTTGTGCAATCTGGATGCTGTGTGGAGATCT 270
||||||| ||||| ||||| || |||| || || ||||
Sbjct 71005 TTTCTGGCTTTGTCCAATCGGGCTGCTATGCAGAAATCT 71043
>seq2804
Length=157078
Score = 89.7 bits (98), Expect = 9e-16
Identities = 112/154 (73%), Gaps = 6/154 (4%)
Strand=Plus/Minus
Query 119 CTTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAATAACAA 178
||||||||||||||| | || || || | || |||| ||||| | | || | | ||
Sbjct 35596 CTTGGTTACCGGGTCAGAGTACCAGGGTGGACCTCATGAGTTCTACATGGTGGAAACCAT 35537
Query 179 CAAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTTTCTGG 238
|| ||| | |||| ||||||||| || || |||| ||||||| ||||||||
Sbjct 35536 ------GGGTGGACGAAATGGTAAATTGAAGAAAATCAATGTGCCTGATGTGTTTTCTGG 35483
Query 239 ATTTGTGCAATCTGGATGCTGTGTGGAGATCTGA 272
||||| || ||||| ||||||||||| || |||
Sbjct 35482 GTTTGTCCAGTCTGGTTGCTGTGTGGAAATATGA 35449
>seq275
Length=395397
Score = 89.7 bits (98), Expect = 9e-16
Identities = 150/217 (69%), Gaps = 9/217 (4%)
Strand=Plus/Plus
Query 57 TGGGGAGAGTCCGACCCGAATGTTAAAGTCGGAGCATGCGGTGTGGATCTTGGTGATGG- 115
|||| |||| ||||||| ||| ||||||||||| || | | ||||| | ||
Sbjct 320434 TGGGCAGAGATCGACCCGGCCGTTCGGGTCGGAGCATGTGGAATCAACCTTGGAGGAGGT 320493
Query 116 --GACCTTGGTTACCGGGTCGGTTTATCAAGGGGCCCCACATGGGTTCTTCTTAGTAAAT 173
| |||||||| ||||||| |||||||| || || |||||| | | |||
Sbjct 320494 CGGGTTTTGGTTACGGGGTCGGAGTATCAAGGCGCACCGTTTGGGTTTTAC------AAT 320547
Query 174 AACAACAAAAAGGATGGGCAAAATAGTAAATTGACAAAGATTGATGTTCCTGATGAATTT 233
| | ||||| ||||||||||||| ||||| || | |||| ||| ||| |||
Sbjct 320548 GTGGAAATGAAGGAAGGGCAAAATAGTACATTGAAGAAACTCAATGTGCCTATTGAGTTT 320607
Query 234 TCTGGATTTGTGCAATCTGGATGCTGTGTGGAGATCT 270
||||| ||||| ||||| || |||| || || ||||
Sbjct 320608 TCTGGGTTTGTCCAATCGGGCTGCTATGCAGAAATCT 320644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 917688350208
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |