Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq11912 123 2e-26 seq51 118 9e-25 seq2344 109 5e-22 seq817 93.3 4e-17 >seq11912 Length=37563 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 33373 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 33431 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 33432 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 33491 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 33492 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 33531 >seq51 Length=698955 Score = 118 bits (130), Expect = 9e-25 Identities = 123/160 (77%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 694788 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 694846 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 694847 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 694906 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||| | || | |||| Sbjct 694907 GCGGACTTGACGTCATCCCCACCTTCCTTCAGTATATCAC 694946 >seq2344 Length=172810 Score = 109 bits (120), Expect = 5e-22 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || |||||| ||| | ||| ||| ||||||| ||||| | Sbjct 24123 CGAGTTGCAGCCTGCAATCCAAACTGAGGACGGGTTTTTGGAGTTAGCTCTCCCTCATCG 24182 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | ||| |||| ||| | |||||||| ||||||| |||| |||||||| ||| Sbjct 24183 GATTGCGACCCTTTGTCTTATCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 24242 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 24243 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 24282 >seq817 Length=266615 Score = 93.3 bits (102), Expect = 4e-17 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 4 AGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGA-TTAGCTCCCCCTCGCGGG 62 |||||||| |||||||| | | | | ||| || | || ||||||| ||||| |||| Sbjct 228466 AGTTGCAGCCTACAATCTGAAATGGGG-ACAGGTTTTTAGAGTTAGCTCACCCTCACGGG 228408 Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122 | | | |||| ||| | |||||||| || |||| |||| ||||| || |||| Sbjct 228407 ATCGTGACCCTTTGTCTCGTCCATTGTAGCACATGTGTCGCCCAGGGCATAAAGGGCATG 228348 Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCG 152 | ||||||||||||||| |||||||||||| Sbjct 228347 ATGACTTGACGTCATCCTCACCTTCCTCCG 228318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415687723360