Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq11912 123 2e-26
seq51 118 9e-25
seq2344 109 5e-22
seq817 93.3 4e-17
>seq11912
Length=37563
Score = 123 bits (136), Expect = 2e-26
Identities = 124/160 (78%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | |
Sbjct 33373 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 33431
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| |||| | |||||||| ||||||| |||| ||||||||||||||
Sbjct 33432 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 33491
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||||||| || | ||||
Sbjct 33492 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATATCAC 33531
>seq51
Length=698955
Score = 118 bits (130), Expect = 9e-25
Identities = 123/160 (77%), Gaps = 1/160 (1%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | |
Sbjct 694788 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 694846
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| || ||| |||| | |||||||| ||||||| |||| ||||||||||||||
Sbjct 694847 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 694906
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| |||||||||||||||||||||||||| | || | ||||
Sbjct 694907 GCGGACTTGACGTCATCCCCACCTTCCTTCAGTATATCAC 694946
>seq2344
Length=172810
Score = 109 bits (120), Expect = 5e-22
Identities = 120/160 (75%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| || |||||| ||| | ||| ||| ||||||| ||||| |
Sbjct 24123 CGAGTTGCAGCCTGCAATCCAAACTGAGGACGGGTTTTTGGAGTTAGCTCTCCCTCATCG 24182
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | ||| |||| ||| | |||||||| ||||||| |||| |||||||| |||
Sbjct 24183 GATTGCGACCCTTTGTCTTATCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 24242
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 24243 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 24282
>seq817
Length=266615
Score = 93.3 bits (102), Expect = 4e-17
Identities = 112/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 4 AGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGA-TTAGCTCCCCCTCGCGGG 62
|||||||| |||||||| | | | | ||| || | || ||||||| ||||| ||||
Sbjct 228466 AGTTGCAGCCTACAATCTGAAATGGGG-ACAGGTTTTTAGAGTTAGCTCACCCTCACGGG 228408
Query 63 TTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATG 122
| | | |||| ||| | |||||||| || |||| |||| ||||| || ||||
Sbjct 228407 ATCGTGACCCTTTGTCTCGTCCATTGTAGCACATGTGTCGCCCAGGGCATAAAGGGCATG 228348
Query 123 AGGACTTGACGTCATCCCCACCTTCCTCCG 152
| ||||||||||||||| ||||||||||||
Sbjct 228347 ATGACTTGACGTCATCCTCACCTTCCTCCG 228318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415687723360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |