Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq2344 111 3e-22
seq11912 105 1e-20
seq10548 98.7 2e-18
seq10820 93.3 7e-17
seq17499 84.2 4e-14
>seq2344
Length=172810
Score = 111 bits (122), Expect = 3e-22
Identities = 193/281 (69%), Gaps = 0/281 (0%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | |||||| || ||| || |||||||| |
Sbjct 24676 GCTTTCGTCTCTCAGTGTCAGTGTCGACCCAGCAGAGTGCTTTCACCGTTGGTGTTCTTT 24735
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| | ||||| |||||||||||| || |||||| |||| || | | |||| ||
Sbjct 24736 CTGACCTCTACACATTTCACCGCTCTACCGAAAATTCCCTCTGCCCCTACCGTACTCCAG 24795
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
||||| || | | |||||||||| | ||| || | |||||
Sbjct 24796 CTTGGTAGTTTTAACCACCTGTCCAGGGTTGAGCCATGGGATTTGACGGCGGACTTAAAA 24855
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| |||||| | ||||||||| ||| | | ||||||||||||| ||| ||||||
Sbjct 24856 AGCCACCTACAGACGCTTTACACCTAATCATTTCGGATAACGCTTGTATCCTCTGTATTA 24915
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286
||||||||| |||||| ||||||||| ||||||||| ||
Sbjct 24916 CCGCGGCTGTTGGCACAGAGTTAGCCGATGCTTATTCCCCA 24956
>seq11912
Length=37563
Score = 105 bits (116), Expect = 1e-20
Identities = 82/98 (84%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247
|||||||| ||||||||| |||| | | |||| | ||| |||||| || ||| |||||
Sbjct 34481 CCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACC 34540
Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285
||||||||||||||| ||||||||| ||||| ||||||
Sbjct 34541 GCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 34578
>seq10548
Length=46761
Score = 98.7 bits (108), Expect = 2e-18
Identities = 194/290 (67%), Gaps = 23/290 (8%)
Strand=Plus/Plus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||| ||||||| ||||| |||||| | | |||||| || |||||| |||| |
Sbjct 20653 CCCATGCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTCT 20712
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|| | | || ||||||||||||||||| ||| | |||||| |||| || | | ||
Sbjct 20713 TCTTTCCGATCTCTACGCATTTCACCGCACCACCGGAAATTCCCTCTGCCCCTACCGTAC 20772
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
|| || |||||| | | ||| |||| | || || | ||||
Sbjct 20773 TCCAGCTTGGTAGTTTCCA---CCGGCCCTGGGAT------------TTGACGGCGGACT 20817
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
| | |||||| | |||||| ||| ||||||| |||||| ||| |
Sbjct 20818 TAAAAAGGCACCTACAGACGCTTTACGCCC--------CGGATAAGGCTTGCATCCTCTG 20869
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
||||||||||||||||||||| ||||||||| ||||||||| ||| ||
Sbjct 20870 TATTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 20919
>seq10820
Length=75845
Score = 93.3 bits (102), Expect = 7e-17
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210
||||||||||| | ||| ||| | ||| | || | |||| | |||||| ||
Sbjct 68758 GGGTTGAGCCCGAGGATTTTACAGCGGACATAAAAAGCCACATACAGACGCTTTACGCCT 68817
Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270
||| | |||| ||||| ||||| ||| ||||||||||| |||||||||| |||||||
Sbjct 68818 AATCATTCCGAATAACTCTTGCATCCTCTGTATTACCGCGACTGCTGGCACAGAGTTAGC 68877
Query 271 CGTGGCTTATTCCTCA 286
|| ||||||||||||
Sbjct 68878 CGATGCTTATTCCTCA 68893
>seq17499
Length=11481
Score = 84.2 bits (92), Expect = 4e-14
Identities = 191/282 (68%), Gaps = 4/282 (1%)
Strand=Plus/Minus
Query 7 CTTTCG-CGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
|||||| | ||| || |||||| | | |||| | || |||||| |||||||| ||
Sbjct 7505 CTTTCGTCTCCT-AGTGTCAGTGTCGGCCCAGTAGAGTGCTTTCGCCGTTGGTGTTCTTC 7447
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || ||||| ||||| | |||| ||| |||||| ||||| || | |||| |
Sbjct 7446 CCGATCTCTACACATTTTATCGCTCCACCGAAAATTCCCTTTGCCCCTACCATACTCCAT 7387
Query 126 AAAAACAGTTTCAAATG-CAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184
|||||| | | | | | | ||||||||||| | ||| ||| | ||| |
Sbjct 7386 CTTGGTAGTTTCCACCGTCTGTCCA-GGGTTGAGCCCGAGGATTTTACAGCGGACATAAA 7328
Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244
|| |||| | | |||||| || ||| | | || ||||| ||||| ||| |||||
Sbjct 7327 AAGCCACCTATAGACGCTTTACGCCTAATCATTTCGAATAACTCTTGCATCCTCTGTATT 7268
Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286
|| || |||||||||| |||||| || |||| |||| ||
Sbjct 7267 ACAACGACTGCTGGCACAGAGTTAGTCGATGCTTTTTCCCCA 7226
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828177848848
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |