Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq2344 111 3e-22 seq11912 105 1e-20 seq10548 98.7 2e-18 seq10820 93.3 7e-17 seq17499 84.2 4e-14 >seq2344 Length=172810 Score = 111 bits (122), Expect = 3e-22 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | |||||| || ||| || |||||||| | Sbjct 24676 GCTTTCGTCTCTCAGTGTCAGTGTCGACCCAGCAGAGTGCTTTCACCGTTGGTGTTCTTT 24735 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | | ||||| |||||||||||| || |||||| |||| || | | |||| || Sbjct 24736 CTGACCTCTACACATTTCACCGCTCTACCGAAAATTCCCTCTGCCCCTACCGTACTCCAG 24795 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 ||||| || | | |||||||||| | ||| || | ||||| Sbjct 24796 CTTGGTAGTTTTAACCACCTGTCCAGGGTTGAGCCATGGGATTTGACGGCGGACTTAAAA 24855 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | ||||||||| ||| | | ||||||||||||| ||| |||||| Sbjct 24856 AGCCACCTACAGACGCTTTACACCTAATCATTTCGGATAACGCTTGTATCCTCTGTATTA 24915 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286 ||||||||| |||||| ||||||||| ||||||||| || Sbjct 24916 CCGCGGCTGTTGGCACAGAGTTAGCCGATGCTTATTCCCCA 24956 >seq11912 Length=37563 Score = 105 bits (116), Expect = 1e-20 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 |||||||| ||||||||| |||| | | |||| | ||| |||||| || ||| ||||| Sbjct 34481 CCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCGTCTTACC 34540 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||||||||||||||| ||||||||| ||||| |||||| Sbjct 34541 GCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 34578 >seq10548 Length=46761 Score = 98.7 bits (108), Expect = 2e-18 Identities = 194/290 (67%), Gaps = 23/290 (8%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| ||||||| ||||| |||||| | | |||||| || |||||| |||| | Sbjct 20653 CCCATGCTTTCGTCTCTCAGTGTCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTCT 20712 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || | | || ||||||||||||||||| ||| | |||||| |||| || | | || Sbjct 20713 TCTTTCCGATCTCTACGCATTTCACCGCACCACCGGAAATTCCCTCTGCCCCTACCGTAC 20772 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || |||||| | | ||| |||| | || || | |||| Sbjct 20773 TCCAGCTTGGTAGTTTCCA---CCGGCCCTGGGAT------------TTGACGGCGGACT 20817 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||| | |||||| ||| ||||||| |||||| ||| | Sbjct 20818 TAAAAAGGCACCTACAGACGCTTTACGCCC--------CGGATAAGGCTTGCATCCTCTG 20869 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||||||| ||||||||| ||||||||| ||| || Sbjct 20870 TATTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 20919 >seq10820 Length=75845 Score = 93.3 bits (102), Expect = 7e-17 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 151 GGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCC 210 ||||||||||| | ||| ||| | ||| | || | |||| | |||||| || Sbjct 68758 GGGTTGAGCCCGAGGATTTTACAGCGGACATAAAAAGCCACATACAGACGCTTTACGCCT 68817 Query 211 AATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGC 270 ||| | |||| ||||| ||||| ||| ||||||||||| |||||||||| ||||||| Sbjct 68818 AATCATTCCGAATAACTCTTGCATCCTCTGTATTACCGCGACTGCTGGCACAGAGTTAGC 68877 Query 271 CGTGGCTTATTCCTCA 286 || |||||||||||| Sbjct 68878 CGATGCTTATTCCTCA 68893 >seq17499 Length=11481 Score = 84.2 bits (92), Expect = 4e-14 Identities = 191/282 (68%), Gaps = 4/282 (1%) Strand=Plus/Minus Query 7 CTTTCG-CGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 |||||| | ||| || |||||| | | |||| | || |||||| |||||||| || Sbjct 7505 CTTTCGTCTCCT-AGTGTCAGTGTCGGCCCAGTAGAGTGCTTTCGCCGTTGGTGTTCTTC 7447 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || ||||| ||||| | |||| ||| |||||| ||||| || | |||| | Sbjct 7446 CCGATCTCTACACATTTTATCGCTCCACCGAAAATTCCCTTTGCCCCTACCATACTCCAT 7387 Query 126 AAAAACAGTTTCAAATG-CAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 |||||| | | | | | | ||||||||||| | ||| ||| | ||| | Sbjct 7386 CTTGGTAGTTTCCACCGTCTGTCCA-GGGTTGAGCCCGAGGATTTTACAGCGGACATAAA 7328 Query 185 TTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 || |||| | | |||||| || ||| | | || ||||| ||||| ||| ||||| Sbjct 7327 AAGCCACCTATAGACGCTTTACGCCTAATCATTTCGAATAACTCTTGCATCCTCTGTATT 7268 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286 || || |||||||||| |||||| || |||| |||| || Sbjct 7267 ACAACGACTGCTGGCACAGAGTTAGTCGATGCTTTTTCCCCA 7226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828177848848