Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq4202 217 2e-54 seq3912 168 1e-39 seq11196 149 1e-33 seq834 129 9e-28 seq9745 122 1e-25 seq2240 122 1e-25 seq2441 111 2e-22 seq3507 95.1 2e-17 >seq4202 Length=189289 Score = 217 bits (240), Expect = 2e-54 Identities = 205/260 (79%), Gaps = 1/260 (0%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 ||||||||| |||| | |||||| ||| |||| ||| |||| | | | | | |||| Sbjct 5220 CTTAGATGCTTTCAACAGTTATCCGCTCCGCACTTGGCTACCCAACGTTTACCATGGGCA 5161 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | | ||||||| |||||||||| |||| |||||||||| |||||||| ||| | |||| Sbjct 5160 GGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTATCGTACTAGGGAAATGTCCT 5101 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| | ||| |||| |||||| ||||||||||||||| ||| | |||||||| Sbjct 5100 CTCAATGCTATAACGGCCACACCGGATATGGACCGAACTGTCTCACGATGGTCTGAACCT 5041 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| || |||||||||||||||| |||||||||||| || |||| |||||| || Sbjct 5040 AGCTCACGTACCACTTTAATGGGCGAACAACCCAACCCTTGGAACATACTACAGCCCTAG 4981 Query 256 GATGAGACGAGCCGACATCG 275 | | || ||||||||| || Sbjct 4980 GTGGCGAAGAGCCGACACCG 4961 Score = 188 bits (208), Expect = 1e-45 Identities = 187/241 (78%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 36 TATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGGTGCACCAGA 94 ||||| ||| |||| ||| |||||| | | | | |||| | ||||||| ||||||| Sbjct 1617 TATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGA 1558 Query 95 GGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCA 154 ||| ||| |||| |||||||| ||||| ||| || || |||||| | ||| ||| Sbjct 1557 GGTGCATCCTTCCCTGTCCTCTCATACTAGGGAAAGGTCATCTCAATGCTATAACGTCCA 1498 Query 155 CGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAA 214 | |||||| ||||| |||||| || ||| |||||||||||||||| ||| | |||||| Sbjct 1497 CACCGGATATGGACCAAACTGTATCACGATGTTCTGAACCCAGCTCACGTAACGCTTTAA 1438 Query 215 TGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATC 274 |||||||||| |||||||||||| || |||| || ||| ||| | || ||||||||||| Sbjct 1437 TGGGCGAACAACCCAACCCTTGGAACATACTACAACCCTAGGTGGCGAAGAGCCGACATC 1378 Query 275 G 275 | Sbjct 1377 G 1377 >seq3912 Length=124311 Score = 168 bits (186), Expect = 1e-39 Identities = 188/251 (75%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 78796 CAGCAGTTCTTCCATACCAACTTAGCTGCCCCGCGCTGCTATTGGCATAACAACCGGTAC 78737 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||| ||||||||| | ||||||| || | || Sbjct 78736 ACCATAGGTTAGCCCAACCCAGTCCACTCGTACTACGATTGGCTCCTCGCAGTTCCCCCT 78677 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || |||| |||||| || ||| |||||| ||||||||| |||||| || || Sbjct 78676 TTAACACCAACGATAGATAGGAACTGAATTGTCTCACGACGTTCTAAACCCAACTTATGT 78617 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| ||| |||| || |||||||||||||| ||||| |||||||||| || | Sbjct 78616 ACCACTTGAATCGGCAAACAACCTAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 78557 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 78556 AGTCGACATCG 78546 >seq11196 Length=45469 Score = 149 bits (164), Expect = 1e-33 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131 |||| | ||||||| |||||||| | ||| |||| |||||||||| || ||| || Sbjct 11739 GGCACGATAACTGGTACACCAGAGTTGCATCCTTCCCAATCCTCTCGTAGTAGGGAAAGG 11680 Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGA 191 || |||||| || | |||||| |||||| ||||||| || |||| || |||| | Sbjct 11679 TCTTCTCAATACTCTAATGCCCACACCGGATATGGACCGAGCTATCTCAGGATATTCTAA 11620 Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251 |||||||| || || |||||||||| ||||| |||||||||||| || ||| ||||| Sbjct 11619 ACCCAGCTTATGTACCACTTTAATGGGTGAACAACCCAACCCTTGGAACAAACTACAGCC 11560 Query 252 CCAGGATGAGACGAGCCGACAT 273 ||||| | || ||||| |||| Sbjct 11559 CCAGGTGGCGAAGAGCCAACAT 11538 >seq834 Length=261106 Score = 129 bits (142), Expect = 9e-28 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| ||||||||||||| ||||||||| |||||| || ||| || ||| ||| ||| Sbjct 95300 GATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAATTCACGTACCACTTGAATCGGC 95241 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| | || |||||||||||||| ||||| |||||||||| || ||| |||||||| Sbjct 95240 GAATAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCG 95185 >seq9745 Length=79306 Score = 122 bits (134), Expect = 1e-25 Identities = 126/164 (77%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 67144 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 67203 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 67204 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 67263 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGG 166 | ||| || ||||||||| || |||||||| |||||| || Sbjct 67264 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGG 67307 >seq2240 Length=170089 Score = 122 bits (134), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCT-CGTACTAAGGACAG 130 |||| | || |||| ||| |||||| || ||| ||| | | ||||||| ||| || Sbjct 53353 GGCACGATAATTGGTACACTAGAGGTACATCATTCCTGGTTGTTTTCGTACTAGGGAAAG 53294 Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190 |||||| || || | ||||| ||| ||||| ||||||||| | ||||| || Sbjct 53293 GTCCTCTAAATGCTCTAATGCCCATACTAAATATGGACCAAACTGTCTCACAACGTTTTG 53234 Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 |||||||||| | | || |||||||||| || | |||||||||||| || || | ||| Sbjct 53233 AACCCAGCTCACATACCACTTTAATGGGTAAATAACCCAACCCTTGGAACATATTATAGC 53174 Query 251 CCCAGGATGA-GACGAGCCGACATCG 275 |||||| ||| || |||||||||||| Sbjct 53173 CCCAGG-TGACGAAGAGCCGACATCG 53149 >seq2441 Length=162635 Score = 111 bits (122), Expect = 2e-22 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 80 AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCA 139 ||||||| || || | || ||||| ||| ||||||||||| | || | || || ||||| Sbjct 137005 AACTGGTACATCATAAGTGTGTCCTTCCTAGTCCTCTCGTATTCAGTAAAGGTCTTCTCA 137064 Query 140 AATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCT 199 | | |||| || ||||| |||| || |||||| |||||| || ||||| || Sbjct 137065 ATGCTATAACGCTCAAATCGGATGTAGACCAAATTGTCTCATGACGTTTTGGACCCAACT 137124 Query 200 CGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATG 259 | || || |||||||||| ||||| |||||||||||| || || | ||| || | | | Sbjct 137125 CATGTACCACTTTAATGGGAGAACAACCCAACCCTTGGAACATAGTACAGTCCAACAAAG 137184 Query 260 AGACGA 265 || ||| Sbjct 137185 AGGCGA 137190 >seq3507 Length=136513 Score = 95.1 bits (104), Expect = 2e-17 Identities = 125/173 (72%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106 ||||||||| ||| | | | |||||| ||||| ||| ||||| ||| | | ||| | Sbjct 32643 AACTTAGCTGCCCGACGCTACTATTGGCATAACAACCGGTACACCATAGGGTGGCCCAAC 32702 Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCC----TACGCCCACGACGGAT 162 || |||||||||||||||| |||||| | | ||| || || |||| ||| Sbjct 32703 CCAATCCTCTCGTACTAAGGTTTTCTCCTCGTAGTTCTCCCTTTAACACCAACGATAGAT 32762 Query 163 AGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215 ||| ||| |||| |||| ||||||||| |||| | ||| ||| || ||| ||| Sbjct 32763 AGGAACCAAACTTTCTCACGACGTTCTAAACCTAACTCACGTACCACTTGAAT 32815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780213880768