Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq4202 217 2e-54
seq3912 168 1e-39
seq11196 149 1e-33
seq834 129 9e-28
seq9745 122 1e-25
seq2240 122 1e-25
seq2441 111 2e-22
seq3507 95.1 2e-17
>seq4202
Length=189289
Score = 217 bits (240), Expect = 2e-54
Identities = 205/260 (79%), Gaps = 1/260 (0%)
Strand=Plus/Minus
Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75
||||||||| |||| | |||||| ||| |||| ||| |||| | | | | | ||||
Sbjct 5220 CTTAGATGCTTTCAACAGTTATCCGCTCCGCACTTGGCTACCCAACGTTTACCATGGGCA 5161
Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135
| | ||||||| |||||||||| |||| |||||||||| |||||||| ||| | ||||
Sbjct 5160 GGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTATCGTACTAGGGAAATGTCCT 5101
Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195
||||| | ||| |||| |||||| ||||||||||||||| ||| | ||||||||
Sbjct 5100 CTCAATGCTATAACGGCCACACCGGATATGGACCGAACTGTCTCACGATGGTCTGAACCT 5041
Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255
||||| ||| || |||||||||||||||| |||||||||||| || |||| |||||| ||
Sbjct 5040 AGCTCACGTACCACTTTAATGGGCGAACAACCCAACCCTTGGAACATACTACAGCCCTAG 4981
Query 256 GATGAGACGAGCCGACATCG 275
| | || ||||||||| ||
Sbjct 4980 GTGGCGAAGAGCCGACACCG 4961
Score = 188 bits (208), Expect = 1e-45
Identities = 187/241 (78%), Gaps = 1/241 (0%)
Strand=Plus/Minus
Query 36 TATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAGTACAACTGGTGCACCAGA 94
||||| ||| |||| ||| |||||| | | | | |||| | ||||||| |||||||
Sbjct 1617 TATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGA 1558
Query 95 GGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCA 154
||| ||| |||| |||||||| ||||| ||| || || |||||| | ||| |||
Sbjct 1557 GGTGCATCCTTCCCTGTCCTCTCATACTAGGGAAAGGTCATCTCAATGCTATAACGTCCA 1498
Query 155 CGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAA 214
| |||||| ||||| |||||| || ||| |||||||||||||||| ||| | ||||||
Sbjct 1497 CACCGGATATGGACCAAACTGTATCACGATGTTCTGAACCCAGCTCACGTAACGCTTTAA 1438
Query 215 TGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATC 274
|||||||||| |||||||||||| || |||| || ||| ||| | || |||||||||||
Sbjct 1437 TGGGCGAACAACCCAACCCTTGGAACATACTACAACCCTAGGTGGCGAAGAGCCGACATC 1378
Query 275 G 275
|
Sbjct 1377 G 1377
>seq3912
Length=124311
Score = 168 bits (186), Expect = 1e-39
Identities = 188/251 (75%), Gaps = 4/251 (2%)
Strand=Plus/Minus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| |
Sbjct 78796 CAGCAGTTCTTCCATACCAACTTAGCTGCCCCGCGCTGCTATTGGCATAACAACCGGTAC 78737
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147
|||| ||||| | ||| ||| |||| ||||||||| | ||||||| || | ||
Sbjct 78736 ACCATAGGTTAGCCCAACCCAGTCCACTCGTACTACGATTGGCTCCTCGCAGTTCCCCCT 78677
Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204
|| || |||| |||||| || ||| |||||| ||||||||| |||||| || ||
Sbjct 78676 TTAACACCAACGATAGATAGGAACTGAATTGTCTCACGACGTTCTAAACCCAACTTATGT 78617
Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264
|| ||| ||| ||| |||| || |||||||||||||| ||||| |||||||||| || |
Sbjct 78616 ACCACTTGAATCGGCAAACAACCTAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 78557
Query 265 AGCCGACATCG 275
|| ||||||||
Sbjct 78556 AGTCGACATCG 78546
>seq11196
Length=45469
Score = 149 bits (164), Expect = 1e-33
Identities = 154/202 (76%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGC 131
|||| | ||||||| |||||||| | ||| |||| |||||||||| || ||| ||
Sbjct 11739 GGCACGATAACTGGTACACCAGAGTTGCATCCTTCCCAATCCTCTCGTAGTAGGGAAAGG 11680
Query 132 TCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGA 191
|| |||||| || | |||||| |||||| ||||||| || |||| || |||| |
Sbjct 11679 TCTTCTCAATACTCTAATGCCCACACCGGATATGGACCGAGCTATCTCAGGATATTCTAA 11620
Query 192 ACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCC 251
|||||||| || || |||||||||| ||||| |||||||||||| || ||| |||||
Sbjct 11619 ACCCAGCTTATGTACCACTTTAATGGGTGAACAACCCAACCCTTGGAACAAACTACAGCC 11560
Query 252 CCAGGATGAGACGAGCCGACAT 273
||||| | || ||||| ||||
Sbjct 11559 CCAGGTGGCGAAGAGCCAACAT 11538
>seq834
Length=261106
Score = 129 bits (142), Expect = 9e-28
Identities = 98/116 (84%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219
|||||| ||||||||||||| ||||||||| |||||| || ||| || ||| ||| |||
Sbjct 95300 GATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAATTCACGTACCACTTGAATCGGC 95241
Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| | || |||||||||||||| ||||| |||||||||| || ||| ||||||||
Sbjct 95240 GAATAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCG 95185
>seq9745
Length=79306
Score = 122 bits (134), Expect = 1e-25
Identities = 126/164 (77%), Gaps = 1/164 (1%)
Strand=Plus/Plus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| ||||||
Sbjct 67144 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 67203
Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | | | |||| | ||||||| |||||||||| |||| ||||||||||||||||||
Sbjct 67204 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 67263
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGG 166
| ||| || ||||||||| || |||||||| |||||| ||
Sbjct 67264 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGG 67307
>seq2240
Length=170089
Score = 122 bits (134), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 3/206 (1%)
Strand=Plus/Minus
Query 72 GGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCT-CGTACTAAGGACAG 130
|||| | || |||| ||| |||||| || ||| ||| | | ||||||| ||| ||
Sbjct 53353 GGCACGATAATTGGTACACTAGAGGTACATCATTCCTGGTTGTTTTCGTACTAGGGAAAG 53294
Query 131 CTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTG 190
|||||| || || | ||||| ||| ||||| ||||||||| | ||||| ||
Sbjct 53293 GTCCTCTAAATGCTCTAATGCCCATACTAAATATGGACCAAACTGTCTCACAACGTTTTG 53234
Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250
|||||||||| | | || |||||||||| || | |||||||||||| || || | |||
Sbjct 53233 AACCCAGCTCACATACCACTTTAATGGGTAAATAACCCAACCCTTGGAACATATTATAGC 53174
Query 251 CCCAGGATGA-GACGAGCCGACATCG 275
|||||| ||| || ||||||||||||
Sbjct 53173 CCCAGG-TGACGAAGAGCCGACATCG 53149
>seq2441
Length=162635
Score = 111 bits (122), Expect = 2e-22
Identities = 136/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 80 AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCA 139
||||||| || || | || ||||| ||| ||||||||||| | || | || || |||||
Sbjct 137005 AACTGGTACATCATAAGTGTGTCCTTCCTAGTCCTCTCGTATTCAGTAAAGGTCTTCTCA 137064
Query 140 AATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCT 199
| | |||| || ||||| |||| || |||||| |||||| || ||||| ||
Sbjct 137065 ATGCTATAACGCTCAAATCGGATGTAGACCAAATTGTCTCATGACGTTTTGGACCCAACT 137124
Query 200 CGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATG 259
| || || |||||||||| ||||| |||||||||||| || || | ||| || | | |
Sbjct 137125 CATGTACCACTTTAATGGGAGAACAACCCAACCCTTGGAACATAGTACAGTCCAACAAAG 137184
Query 260 AGACGA 265
|| |||
Sbjct 137185 AGGCGA 137190
>seq3507
Length=136513
Score = 95.1 bits (104), Expect = 2e-17
Identities = 125/173 (72%), Gaps = 4/173 (2%)
Strand=Plus/Plus
Query 47 AACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATC 106
||||||||| ||| | | | |||||| ||||| ||| ||||| ||| | | ||| |
Sbjct 32643 AACTTAGCTGCCCGACGCTACTATTGGCATAACAACCGGTACACCATAGGGTGGCCCAAC 32702
Query 107 CCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCC----TACGCCCACGACGGAT 162
|| |||||||||||||||| |||||| | | ||| || || |||| |||
Sbjct 32703 CCAATCCTCTCGTACTAAGGTTTTCTCCTCGTAGTTCTCCCTTTAACACCAACGATAGAT 32762
Query 163 AGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAAT 215
||| ||| |||| |||| ||||||||| |||| | ||| ||| || ||| |||
Sbjct 32763 AGGAACCAAACTTTCTCACGACGTTCTAAACCTAACTCACGTACCACTTGAAT 32815
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780213880768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |