Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq11912 167 6e-39 seq7280 152 1e-34 seq6535 145 2e-32 seq10820 131 4e-28 seq17499 123 6e-26 seq8462 114 3e-23 seq2344 107 5e-21 seq726 105 2e-20 seq6169 95.1 3e-17 seq23 91.5 4e-16 >seq11912 Length=37563 Score = 167 bits (184), Expect = 6e-39 Identities = 142/175 (81%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| |||||| || |||| ||| ||||| |||||||||| ||| |||||||| Sbjct 34632 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 34691 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 |||||||| ||||| |||||| || |||||||||||| |||||||||||| |||||| Sbjct 34692 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 34751 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194 |||||||||| | ||| | | || ||| ||| ||||| ||||||| ||||| Sbjct 34752 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAAT 34806 >seq7280 Length=76597 Score = 152 bits (168), Expect = 1e-34 Identities = 138/173 (80%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 23 TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTG 82 ||| | | ||| || ||| ||| |||||||| ||||||||| | || ||||||||||| Sbjct 49633 TCTACCTCCACACGACATTGCTCTGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTG 49692 Query 83 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 ||| | ||||||||||||||| ||||||||||||| ||||| || |||||||||| | Sbjct 49693 CTGGCCCCCGTAGGAGTCTGGGT--TGTCTCAGTTCCAATGTGGTTGATCATCCTCTCGG 49750 Query 143 ACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||||||| |||| ||| || ||| || ||| || | | |||||||||||| Sbjct 49751 ACCAGCTACTGATCATCGTCTTGGTAAGCTATTGCCTCACTAACTAGCTAATC 49803 Score = 80.6 bits (88), Expect = 7e-13 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAG 165 ||||| ||||| |||||| ||||||||||||||||||||| ||| |||| |||| | Sbjct 49572 CGTGTTTCAGTCTCAGTGTAGCTGGTCATCCTCTCAGACCACCTACTGATCATCGCTGTG 49513 Query 166 GTGGGCCATTACCCCGCCAACTAGCTAAT 194 || || ||| | | ||||||||||||| Sbjct 49512 GTAAGCTATTGTCTCACCAACTAGCTAAT 49484 >seq6535 Length=80559 Score = 145 bits (160), Expect = 2e-32 Identities = 232/331 (70%), Gaps = 13/331 (4%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || || || ||| || | | | ||| || ||| ||| |||||||| |||||||| Sbjct 14044 TTCACGACTCGTGGGCTTTTTACCTCCACACGACATTGCTCTGTCAGGCTTTCGCCCATT 13985 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||| ||||||||| ||||||| ||| ||| ||| ||| | ||||| Sbjct 13984 GCGAAAAATTCCCCACTACTGCCTCCCATAGGAGTTTGGGTCGTCTCTTAGTCCAAGTGT 13925 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 || || |||||||||| |||||| || |||| || ||| ||| | ||| || | ||| Sbjct 13924 GGTTGATCATCCTCTCGGACCAGTTACTGATCATCACCTTGGTAAGTTATTGCCTCACCA 13865 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 13864 ACTAGCTAATCAGACACGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 13816 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| ||||||||| ||| | ||||||| |||| Sbjct 13815 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAACTGTTGTTCCCCTCCCAAGGGCA 13758 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCAC 335 | ||| | | ||||||| ||||||| ||| Sbjct 13757 GGTTCTTACGCGTTACTCATCCGTCCGTCAC 13727 >seq10820 Length=75845 Score = 131 bits (144), Expect = 4e-28 Identities = 100/117 (85%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 |||||| |||| || | ||| |||| | ||||||| | || ||||| || || ||||||| Sbjct 68955 CACGCGACATG-CTCCGTCAAGCTTTCACCCATTGCGAAAAATTCCTCATTGGTGCCTCC 69013 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 147 |||||||||||||| ||||||||||| |||||||||||| |||||||||| |||||| Sbjct 69014 CGTAGGAGTCTGGATCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAG 69070 >seq17499 Length=11481 Score = 123 bits (136), Expect = 6e-26 Identities = 104/128 (81%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 19 GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCC 78 ||||||| | || | | ||| ||| | |||||||| ||||||||| | || ||||| | Sbjct 7176 GCCTTCTATCTCCATGAGACATTGCTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCTC 7117 Query 79 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTC 138 | || |||||||||||||| ||||| |||||||| ||| ||||||||||| |||||||| Sbjct 7116 ATTGGTGCCTCCCGTAGGATTCTGGGCCGTGTCTTAGTCCCAGTGTGGCTAATCATCCTC 7057 Query 139 TCAGACCA 146 || ||||| Sbjct 7056 TCGGACCA 7049 >seq8462 Length=62912 Score = 114 bits (126), Expect = 3e-23 Identities = 133/178 (75%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77 ||| |||| | | |||||| ||| ||| |||||||| ||||||| | || || ||| Sbjct 25443 GGCTTTCTACCTCCACGCGACATTGCTCTGTCAGGCTTTTTCCCATTGCGAAAAAT-CCC 25501 Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 ||| ||| ||||||||||||||| | ||||||| | | ||||||||||| ||||||| Sbjct 25502 TACTACTGTCTCCCGTAGGAGTCTAGGTCGTGTCTTAATCCCAGTGTGGCTAATCATCCT 25561 Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 || || || ||| |||| || ||| | | | ||| | | |||||||||||||| Sbjct 25562 CTTGGATCAACTACTGATCATCACCTTGATAAACTATTGTCTCACCAACTAGCTAATC 25619 >seq2344 Length=172810 Score = 107 bits (118), Expect = 5e-21 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||| ||| ||| | |||||||| || | ||| Sbjct 24991 TTCACGACCCGTGGGCCTTCTACCTCCACGCGACATTGCTCCGTCAGGCTTTCGTCTATT 25050 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTC 111 ||| || |||||||||| ||||||||||||||||||||| |||||| Sbjct 25051 GTGAAAAATTCCCCACTACTGCCTCCCGTAGGAGTCTGGGTCGTGTC 25097 >seq726 Length=360967 Score = 105 bits (116), Expect = 2e-20 Identities = 110/144 (76%), Gaps = 8/144 (6%) Strand=Plus/Minus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGC-------CCATTGTGCAATA 72 ||||||||| |||||| || ||| ||||||||| ||| ||||||| ||| | Sbjct 421 CCTTCTTCACTCACGCGATATTACTGGATCAGGCTTTCGCNTTTCGCCCATTGTCCAAGA 362 Query 73 TTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTC 132 ||||||||||||||| ||||| |||||| | ||||||||| | || ||||||||| || Sbjct 361 TTCCCCACTGCTGCC-CCCGTGGGAGTCCAGGTCGTGTCTCAATCCCGGTGTGGCTGATC 303 Query 133 ATCCTCTCAGACCAGCTAGGGATC 156 |||| |||| ||||| | ||| Sbjct 302 ATCCAAAAAGACTAGCTAAGCATC 279 >seq6169 Length=85388 Score = 95.1 bits (104), Expect = 3e-17 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAG 165 ||||||||||| |||||||||||| ||||||||||||| ||||| |||| ||| || | Sbjct 65944 CGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGATTAGCTACTGATCATCGTCTTG 66003 Query 166 GTGGGCCATTACCCCGCCAACTAGCTAATC 195 || || ||| || | |||||||||||||| Sbjct 66004 GTAAGCTATTGCCTCACCAACTAGCTAATC 66033 >seq23 Length=775775 Score = 91.5 bits (100), Expect = 4e-16 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCT 128 ||||| ||||||| | ||| |||||||||| || |||| | ||| ||| | |||| Sbjct 410912 AATAT--CCCACTGTTACCTACCGTAGGAGTTTGAGTTGTGTATTAGTCCCAATATGGCA 410855 Query 129 GGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTA 188 | |||| ||||||||||||||| ||| |||||| ||| | ||| || | ||||||| Sbjct 410854 GATCATACTCTCAGACCAGCTACTTATCATCGCCTTGGTAAGTTATTGCCTCACCAACTA 410795 Query 189 GCTAATC 195 ||||||| Sbjct 410794 GCTAATC 410788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221452786688