Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq11912 167 6e-39
seq7280 152 1e-34
seq6535 145 2e-32
seq10820 131 4e-28
seq17499 123 6e-26
seq8462 114 3e-23
seq2344 107 5e-21
seq726 105 2e-20
seq6169 95.1 3e-17
seq23 91.5 4e-16
>seq11912
Length=37563
Score = 167 bits (184), Expect = 6e-39
Identities = 142/175 (81%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79
||||||||| |||||| || |||| ||| ||||| |||||||||| ||| ||||||||
Sbjct 34632 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 34691
Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139
|||||||| ||||| |||||| || |||||||||||| |||||||||||| ||||||
Sbjct 34692 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 34751
Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAAT 194
|||||||||| | ||| | | || ||| ||| ||||| ||||||| |||||
Sbjct 34752 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAAT 34806
>seq7280
Length=76597
Score = 152 bits (168), Expect = 1e-34
Identities = 138/173 (80%), Gaps = 2/173 (1%)
Strand=Plus/Plus
Query 23 TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTG 82
||| | | ||| || ||| ||| |||||||| ||||||||| | || |||||||||||
Sbjct 49633 TCTACCTCCACACGACATTGCTCTGTCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTG 49692
Query 83 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142
||| | ||||||||||||||| ||||||||||||| ||||| || |||||||||| |
Sbjct 49693 CTGGCCCCCGTAGGAGTCTGGGT--TGTCTCAGTTCCAATGTGGTTGATCATCCTCTCGG 49750
Query 143 ACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195
|||||||| |||| ||| || ||| || ||| || | | ||||||||||||
Sbjct 49751 ACCAGCTACTGATCATCGTCTTGGTAAGCTATTGCCTCACTAACTAGCTAATC 49803
Score = 80.6 bits (88), Expect = 7e-13
Identities = 71/89 (80%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAG 165
||||| ||||| |||||| ||||||||||||||||||||| ||| |||| |||| |
Sbjct 49572 CGTGTTTCAGTCTCAGTGTAGCTGGTCATCCTCTCAGACCACCTACTGATCATCGCTGTG 49513
Query 166 GTGGGCCATTACCCCGCCAACTAGCTAAT 194
|| || ||| | | |||||||||||||
Sbjct 49512 GTAAGCTATTGTCTCACCAACTAGCTAAT 49484
>seq6535
Length=80559
Score = 145 bits (160), Expect = 2e-32
Identities = 232/331 (70%), Gaps = 13/331 (4%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || || || ||| || | | | ||| || ||| ||| |||||||| ||||||||
Sbjct 14044 TTCACGACTCGTGGGCTTTTTACCTCCACACGACATTGCTCTGTCAGGCTTTCGCCCATT 13985
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||| ||||||||| ||||||| ||| ||| ||| ||| | |||||
Sbjct 13984 GCGAAAAATTCCCCACTACTGCCTCCCATAGGAGTTTGGGTCGTCTCTTAGTCCAAGTGT 13925
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
|| || |||||||||| |||||| || |||| || ||| ||| | ||| || | |||
Sbjct 13924 GGTTGATCATCCTCTCGGACCAGTTACTGATCATCACCTTGGTAAGTTATTGCCTCACCA 13865
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
||||||||||| | | | | ||| || | || ||| ||| ||||
Sbjct 13864 ACTAGCTAATCAGACACGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 13816
Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304
|| | | | || | ||||||||| ||||||||| ||| | ||||||| ||||
Sbjct 13815 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAACTGTTGTTCCCCTCCCAAGGGCA 13758
Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCAC 335
| ||| | | ||||||| ||||||| |||
Sbjct 13757 GGTTCTTACGCGTTACTCATCCGTCCGTCAC 13727
>seq10820
Length=75845
Score = 131 bits (144), Expect = 4e-28
Identities = 100/117 (85%), Gaps = 1/117 (1%)
Strand=Plus/Plus
Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90
|||||| |||| || | ||| |||| | ||||||| | || ||||| || || |||||||
Sbjct 68955 CACGCGACATG-CTCCGTCAAGCTTTCACCCATTGCGAAAAATTCCTCATTGGTGCCTCC 69013
Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAG 147
|||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 69014 CGTAGGAGTCTGGATCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAG 69070
>seq17499
Length=11481
Score = 123 bits (136), Expect = 6e-26
Identities = 104/128 (81%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 19 GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCC 78
||||||| | || | | ||| ||| | |||||||| ||||||||| | || ||||| |
Sbjct 7176 GCCTTCTATCTCCATGAGACATTGCTCCGTCAGGCTTTCGCCCATTGCGAAAAATTCCTC 7117
Query 79 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTC 138
| || |||||||||||||| ||||| |||||||| ||| ||||||||||| ||||||||
Sbjct 7116 ATTGGTGCCTCCCGTAGGATTCTGGGCCGTGTCTTAGTCCCAGTGTGGCTAATCATCCTC 7057
Query 139 TCAGACCA 146
|| |||||
Sbjct 7056 TCGGACCA 7049
>seq8462
Length=62912
Score = 114 bits (126), Expect = 3e-23
Identities = 133/178 (75%), Gaps = 1/178 (1%)
Strand=Plus/Plus
Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77
||| |||| | | |||||| ||| ||| |||||||| ||||||| | || || |||
Sbjct 25443 GGCTTTCTACCTCCACGCGACATTGCTCTGTCAGGCTTTTTCCCATTGCGAAAAAT-CCC 25501
Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137
||| ||| ||||||||||||||| | ||||||| | | ||||||||||| |||||||
Sbjct 25502 TACTACTGTCTCCCGTAGGAGTCTAGGTCGTGTCTTAATCCCAGTGTGGCTAATCATCCT 25561
Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195
|| || || ||| |||| || ||| | | | ||| | | ||||||||||||||
Sbjct 25562 CTTGGATCAACTACTGATCATCACCTTGATAAACTATTGTCTCACCAACTAGCTAATC 25619
>seq2344
Length=172810
Score = 107 bits (118), Expect = 5e-21
Identities = 88/107 (82%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||||||| | | |||||| ||| ||| | |||||||| || | |||
Sbjct 24991 TTCACGACCCGTGGGCCTTCTACCTCCACGCGACATTGCTCCGTCAGGCTTTCGTCTATT 25050
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTC 111
||| || |||||||||| ||||||||||||||||||||| ||||||
Sbjct 25051 GTGAAAAATTCCCCACTACTGCCTCCCGTAGGAGTCTGGGTCGTGTC 25097
>seq726
Length=360967
Score = 105 bits (116), Expect = 2e-20
Identities = 110/144 (76%), Gaps = 8/144 (6%)
Strand=Plus/Minus
Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGC-------CCATTGTGCAATA 72
||||||||| |||||| || ||| ||||||||| ||| ||||||| ||| |
Sbjct 421 CCTTCTTCACTCACGCGATATTACTGGATCAGGCTTTCGCNTTTCGCCCATTGTCCAAGA 362
Query 73 TTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTC 132
||||||||||||||| ||||| |||||| | ||||||||| | || ||||||||| ||
Sbjct 361 TTCCCCACTGCTGCC-CCCGTGGGAGTCCAGGTCGTGTCTCAATCCCGGTGTGGCTGATC 303
Query 133 ATCCTCTCAGACCAGCTAGGGATC 156
|||| |||| ||||| | |||
Sbjct 302 ATCCAAAAAGACTAGCTAAGCATC 279
>seq6169
Length=85388
Score = 95.1 bits (104), Expect = 3e-17
Identities = 75/90 (83%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 106 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAG 165
||||||||||| |||||||||||| ||||||||||||| ||||| |||| ||| || |
Sbjct 65944 CGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGATTAGCTACTGATCATCGTCTTG 66003
Query 166 GTGGGCCATTACCCCGCCAACTAGCTAATC 195
|| || ||| || | ||||||||||||||
Sbjct 66004 GTAAGCTATTGCCTCACCAACTAGCTAATC 66033
>seq23
Length=775775
Score = 91.5 bits (100), Expect = 4e-16
Identities = 97/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 69 AATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCT 128
||||| ||||||| | ||| |||||||||| || |||| | ||| ||| | ||||
Sbjct 410912 AATAT--CCCACTGTTACCTACCGTAGGAGTTTGAGTTGTGTATTAGTCCCAATATGGCA 410855
Query 129 GGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTA 188
| |||| ||||||||||||||| ||| |||||| ||| | ||| || | |||||||
Sbjct 410854 GATCATACTCTCAGACCAGCTACTTATCATCGCCTTGGTAAGTTATTGCCTCACCAACTA 410795
Query 189 GCTAATC 195
|||||||
Sbjct 410794 GCTAATC 410788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1221452786688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |