Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq11912 268 3e-69 seq10548 197 4e-48 seq6535 187 7e-45 seq10820 183 9e-44 seq2344 183 9e-44 seq8462 159 1e-36 seq7280 158 4e-36 seq17499 156 1e-35 seq23 122 3e-25 seq6169 113 1e-22 seq726 109 2e-21 seq5471 98.7 3e-18 >seq11912 Length=37563 Score = 268 bits (296), Expect = 3e-69 Identities = 258/328 (79%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 34806 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 34747 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 34746 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 34687 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--- 344 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | Sbjct 34686 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAG 34627 Query 345 TTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCC 402 | | |||||||||||| || || | | ||| ||||| | ||| ||||| |||||| Sbjct 34626 ACCCGCTCGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCC 34567 Query 403 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| Sbjct 34566 CCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATG 34507 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 ||| |||||||||||| |||||| ||| Sbjct 34506 ACT-GGGCGTAAAGGGCACGTAGGCGGT 34480 >seq10548 Length=46761 Score = 197 bits (218), Expect = 4e-48 Identities = 221/295 (75%), Gaps = 13/295 (4%) Strand=Plus/Minus Query 206 GATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACT 265 |||||||| | | | |||||| ||||| ||||| | | ||| ||| ||| ||||||| Sbjct 21095 GATCAGTAACTGGTCCGAGAGGATGATCAACCACACTTGGACTAAGAGACGACCCAAACT 21036 Query 266 CCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGC 325 |||| ||||||||| |||||||||| || | |||||||| ||||||||| | ||||| || Sbjct 21035 CCTATGGGAGGCAGTAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGC 20976 Query 326 CGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGG 385 |||||| | ||||||| |||||||| || ||| | || | | |||||||| Sbjct 20975 CGCGTGGAGGTAGAAGGCCCACGGGTCGTGAACTTCT-TTTTCCCG---GGCAATGACGG 20920 Query 386 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 445 || || ||| |||| ||||||||| |||||||||||||||||||||| ||| || Sbjct 20919 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 20860 Query 446 TAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| |||||| ||||||||||| || ||||||| || ||||||| Sbjct 20859 AAGCCTTATCC---------GGGGCGTAAAGCGTCTGTAGGTGCCTTTTTAAGTC 20814 >seq6535 Length=80559 Score = 187 bits (206), Expect = 7e-45 Identities = 206/271 (76%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 || ||||||||||||||||||| ||| || |||||||||| || |||||||| | | Sbjct 13847 CGTGTCTGATTAGCTAGTTGGTGAGGCAATAACTTACCAAGGTGATGATCAGTAACTGGT 13906 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| ||||| | | ||| ||| ||| ||||||||||| ||||||||| Sbjct 13907 CCGAGAGGATGATCAACCACACTTGGACTAAGAGACGACCCAAACTCCTATGGGAGGCAG 13966 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 |||||||||| || | |||||||| ||||||||| ||||| | || ||| | | Sbjct 13967 TAGTGGGGAATTTTTCGCAATGGGCGAAAGCCTGACAGAGCAATGTCGTGTGGAGGTAAA 14026 Query 340 AGGCCTTCGGGTCGTAAAGCTCT-GTCCTCAAG--GAAGATAATGACGGTACTTGAGGAG 396 | ||| || ||||| || ||| |||| ||| |||| ||||| |||| || ||| Sbjct 14027 AAGCCCACGAGTCGTGAACTTCTCTTCCTGAAGAAGAAG-CAATGAGGGTATCTGGGGAA 14085 Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCG 427 |||| ||||||||| ||||||||||||| Sbjct 14086 TAAGCATCGGCTAACTCTGTGCCAGCAGCCG 14116 >seq10820 Length=75845 Score = 183 bits (202), Expect = 9e-44 Identities = 215/283 (76%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 |||||| ||||| |||||| ||| ||||||||||| |||| |||||||||||||||| || Sbjct 69063 GAGAGGATGATCAGCCACACTGGGACTGAGACACGATCCAGACTCCTACGGGAGGCACCA 69004 Query 282 GTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT-GAA 340 || ||||| || | ||||||| ||||| ||| | ||| | | |||||| | ||| || Sbjct 69003 ATGAGGAATTTTTCGCAATGGGTGAAAGCTTGACGGAGC-ATGTCGCGTG-GAGATAGAT 68946 Query 341 GGCCTTCGGGTCGTAAAGCTCTGT-CCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||| |||||| | || ||| | | | ||||| ||||||| || ||||||| Sbjct 68945 GGCTCGCGGGTCATGAACTTCTTTATCCCGGAGAAGAAGCAATGACGATATTTGAGGAAT 68886 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| |||||||||| ||||||||||| ||| || || ||||| || Sbjct 68885 AAGCATCGGCTAACTCTGTGCCAGCAGTCGCGGTAATACAGAGGATGCAAGAGTTATTCG 68826 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | ||||||||| || ||| |||| || ||| ||| Sbjct 68825 GAATGA-TTAGGCGTAAAGCGTCTGTATGTGGCTTTTTATGTC 68784 >seq2344 Length=172810 Score = 183 bits (202), Expect = 9e-44 Identities = 193/252 (77%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 251 GACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGC 310 |||||| ||| ||||||||||||||||| |||||||||| || |||||| | | ||||| Sbjct 25097 GACACGACCCAGACTCCTACGGGAGGCAGTAGTGGGGAATTTTTCACAATAGACGAAAGC 25038 Query 311 CTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAA 370 |||| | ||||| | |||||| | ||||||| |||||||| || ||| | | || Sbjct 25037 CTGACGGAGCAATGTCGCGTGGAGGTAGAAGGCCCACGGGTCGTGAACTTCTTTTCCCAG 24978 Query 371 GGAAGA--TAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGC 428 ||||| ||||||| || || ||| |||| ||||||||| |||||| ||||||| Sbjct 24977 AGAAGAAGCAATGACGATATATGGGGAATAAGCATCGGCTAACTCTGTGCCAACAGCCGC 24918 Query 429 GGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTG 488 |||||||| ||| | ||||||||||| ||| | | || |||||| || ||||||| Sbjct 24917 GGTAATACAGAGGATACAAGCGTTATCCGAAATGA-TTAGGTGTAAAGCGTCTGTAGGTG 24859 Query 489 GTTTCTTAAGTC 500 | || ||||||| Sbjct 24858 GCTTTTTAAGTC 24847 >seq8462 Length=62912 Score = 159 bits (176), Expect = 1e-36 Identities = 212/290 (73%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| || || | ||| ||||| || ||||||||| || Sbjct 25626 CGCGTCTGATTAGCTAGTTGGTGAGACAATAGTTTATCAAGGTGATGATCAGTAGTTGAT 25567 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | ||||| |||| |||||| ||| | | ||||||| | | ||||||||||||| ||| Sbjct 25566 CCAAGAGGATGATTAGCCACACTGGGATTAAGACACGACCTAGACTCCTACGGGAGACAG 25507 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||| ||| || || | ||||||| |||||||||| ||||| | |||||| | || Sbjct 25506 TAGTAGGG-ATTTTTCGCAATGGGAAAAAGCCTGACAGAGCAATGTCGCGTGGAGGTAGA 25448 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAA 399 | ||| ||||| |||| ||| | || | | |||||||||| |||||| || Sbjct 25447 AAGCCCATGGGTC-TAAACTTCT-TTTTCCCG---GGCAATGACGGTATCTGAGGAATAA 25393 Query 400 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 449 || ||||||||| ||| | | || || |||||||| ||| || ||| Sbjct 25392 GCATCGGCTAACTCTGTGTCGGTAGTCGTGGTAATACAGAGGATGCAAGC 25343 >seq7280 Length=76597 Score = 158 bits (174), Expect = 4e-36 Identities = 135/166 (81%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 166 TGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 ||||||||||||| || ||| || |||||||||| ||| |||||||||| | | |||| Sbjct 49804 TGATTAGCTAGTTAGTGAGGCAATAGCTTACCAAGACGATGATCAGTAGCTGGTCCGAGA 49745 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 || ||||| ||||||||||||||||||| ||| ||||||||||| | ||||||||| Sbjct 49744 GGATGATCAACCACATTGGAACTGAGACA--ACCCAGACTCCTACGGGGGCCAGCAGTGG 49687 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 ||||| || | |||||||| ||||||||| ||||| | || ||| Sbjct 49686 GGAATTTTTCGCAATGGGCGAAAGCCTGACAGAGCAATGTCGTGTG 49641 Score = 82.4 bits (90), Expect = 2e-13 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||||| |||||||||||||| || || |||||||| |||| ||||||||| | Sbjct 49476 CGCGTCTAATTAGCTAGTTGGTGAGACAATAGCTTACCACAGCGATGATCAGTAGGTGGT 49535 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAA 262 |||||||| ||| | || ||| || ||||| ||||| |||| Sbjct 49536 CTGAGAGGATGACCAGCTACACTGAGACTGAAACACGACCCAA 49578 >seq17499 Length=11481 Score = 156 bits (172), Expect = 1e-35 Identities = 208/283 (73%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 |||||| |||| |||||| ||| ||| |||||||| ||| | |||||||||||||| || Sbjct 7055 GAGAGGATGATTAGCCACACTGGGACTAAGACACGGCCCAGAATCCTACGGGAGGCACCA 7114 Query 282 GTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT-GAA 340 || ||||| || | |||||||| ||||||||| | ||||| | | | || | ||| ||| Sbjct 7115 ATGAGGAATTTTTCGCAATGGGCGAAAGCCTGACGGAGCAATGTCTCATG-GAGATAGAA 7173 Query 341 GGCCTTCGGGTCGTAAAGCTCTGT-CCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||| ||||| | || ||| | | || ||||| ||||||| || || ||| Sbjct 7174 GGCTCATGGGTCATGAACTTCTTTATCCCAGAGAAGAAGCAATGACGATATATGGGGAAA 7233 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| || |||||| |||||||||| || ||||||| ||| || || ||||| || Sbjct 7234 AAGCATCGACTAACTCTGTGCCAGCAGTCGTTGTAATACAGAGGATGCAAGAGTTATTCG 7293 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| | | ||||||||| || ||||||| || ||| ||| Sbjct 7294 AAATGA-TTAGGCGTAAAGCGTCTATAGGTGGCTTTTTATGTC 7335 >seq23 Length=775775 Score = 122 bits (134), Expect = 3e-25 Identities = 108/134 (81%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || ||||||||||||| ||| |||||| | Sbjct 410781 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAACTTACCAAGGCGATGATAAGTAGCTGGT 410840 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 ||||||| ||||| |||| ||||| ||| | |||| ||||||||||||| ||| | Sbjct 410841 CTGAGAGTATGATCTGCCATATTGGGACTAATACACAACTCAAACTCCTACGGTAGGTAA 410900 Query 280 CAGTGGGGAATATT 293 ||||||| ||||| Sbjct 410901 CAGTGGG--ATATT 410912 >seq6169 Length=85388 Score = 113 bits (124), Expect = 1e-22 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 162 CGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCT 221 |||||||||||||||||||| ||| || |||||||||| ||| |||||||||| | || Sbjct 66038 CGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGACGATGATCAGTAGCTAATCT 65979 Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACG 256 |||||| ||||| |||||| ||| ||||||||||| Sbjct 65978 GAGAGGATGATCAGCCACACTGGGACTGAGACACG 65944 >seq726 Length=360967 Score = 109 bits (120), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 13/209 (6%) Strand=Plus/Plus Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 || ||||| |||||| || | ||||||||| | ||||| ||||| ||||||||||| Sbjct 299 GGATGATCAGCCACACCGGGATTGAGACACGACCTGGACTCCCACGGG-GGCAGCAGTGG 357 Query 286 GGAATATTGCACAATGG-------GCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATG 338 ||||| ||| ||||||| || |||||||||| ||| || |||||||| || | Sbjct 358 GGAATCTTGGACAATGGGCGAAANGCGAAAGCCTGATCCAGTAATATCGCGTGAGTGAAG 417 Query 339 AAGGCC---TTCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAG 393 |||| | | |||||||||||| || || | | ||| |||| | ||| ||| Sbjct 418 AAGGGCAAGACCCACTCGTAAAGCTCTTTCGTCGAGTGCGCGATCATGATAGGACTCGAG 477 Query 394 GAGGAAGCCCCGGCTAACTACGTGCCAGC 422 || ||||||| | |||||| ||||||| Sbjct 478 GAAGAAGCCCTGACTAACTCTATGCCAGC 506 >seq5471 Length=99072 Score = 98.7 bits (108), Expect = 3e-18 Identities = 162/229 (71%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 275 GGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG-AG 333 |||| || |||||||| || | |||||||| |||| || | | ||||| || ||||| || Sbjct 45910 GGCAACAATGGGGAATTTTCCGCAATGGGCGAAAGTCTAACGGAGCAATGCTGCGTGGAG 45969 Query 334 CGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGAT--AATGACGGTACTTG 391 || |||||| |||| || || ||| | ||| ||||| ||| ||| || || Sbjct 45970 GTAT-AAGGCCCACGGGCTGTGAACTTCTTTTCTCGGAGAAGAATCAATAACGATATCTG 46028 Query 392 AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGT 451 || |||| ||||||||| ||||||| || | | |||||| ||| | || || Sbjct 46029 GAGAATAAGCATCGGCTAACTCTGTGCCAGTAGATGTGATAATACAGAGGATACAAGTGT 46088 Query 452 TATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||||||| | | || ||||| || |||||||| | ||||||| Sbjct 46089 TATCCGGAATGA-TTAGGTGTAAATCGTCTGTAGGTGGCGTTTTAAGTC 46136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496439539712