Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq10548 203 8e-50 seq2344 201 3e-49 seq11912 185 2e-44 seq17499 168 2e-39 seq10820 116 9e-24 seq10262 89.7 1e-15 seq42952 84.2 5e-14 seq2387 84.2 5e-14 >seq10548 Length=46761 Score = 203 bits (224), Expect = 8e-50 Identities = 288/405 (71%), Gaps = 25/405 (6%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||||||||||||||||||| ||| || ||| Sbjct 20915 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 20856 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||| ||||||||| || ||||||| || ||||||| | || ||| Sbjct 20855 CTTATCCGG--------GGCGTAAAGCGTCTGTAGGTGCCTTTTTAAGTCCGCCGTCAAA 20804 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | ||| ||| | |||||| | ||| |||| | | ||||||| Sbjct 20803 TCCCAGGGC-------CGG--------TGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 20759 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| ||||||||||||||||| || | | ||| |||| |||||| Sbjct 20758 GAGGGAATTTCCGGTGGTGCGGTGAAATGCGTAGAGATCGGAAAGAAGACCAACGGCGAA 20699 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| |||||||| || ||||| Sbjct 20698 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCATGGGGAGCGAATGGGATT 20639 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 ||||| || ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 20638 AGATAGCCCTGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 20580 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 20579 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 20535 >seq2344 Length=172810 Score = 201 bits (222), Expect = 3e-49 Identities = 253/345 (73%), Gaps = 2/345 (1%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||| ||||||||||||||| ||| | ||| Sbjct 24956 TGGGGAATAAGCATCGGCTAACTCTGTGCCAACAGCCGCGGTAATACAGAGGATACAAGC 24897 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||| ||| | | || |||||| || |||||||| || ||||||| | || ||| Sbjct 24896 GTTATCCGAAATGATTAGGTGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 24837 Query 125 GGCTATGGCTCAACCCCGGGACTGCTT-TTGAAACTGCAGGGCTAGAGTGCAGGAGGGGC 183 | |||||||||||| || || | | || ||||| | ||| |||| | | |||||| Sbjct 24836 TCCCATGGCTCAACCCTGG-ACAGGTGGTTAAAACTACCAAGCTGGAGTACGGTAGGGGC 24778 Query 184 AAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGA 243 | |||||| || |||||||||||| ||||| | || | |||||||| || || Sbjct 24777 AGAGGGAATTTTCGGTAGAGCGGTGAAATGTGTAGAGGTCAGAAAGAACACCAACGGTGA 24718 Query 244 AGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGAT 303 | || |||||| | |||||||||||| ||||||| | |||| || ||| Sbjct 24717 AAGCACTCTGCTGGGTCGACACTGACACTGAGAGACGAAAGCTAGTGGAGGGAATGGGAA 24658 Query 304 TAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT 348 ||||||||| | ||||| ||||||||||||| |||||||| || Sbjct 24657 TAGATACCCCAGCAGTCCTAGCCGTAAACGATGGATACTAGGCGT 24613 >seq11912 Length=37563 Score = 185 bits (204), Expect = 2e-44 Identities = 252/350 (72%), Gaps = 20/350 (6%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 34582 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 34523 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | ||| Sbjct 34522 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 34463 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | | ||| |||| | ||||| | || || ||||| Sbjct 34462 AAAGTC---GCCAAAAACTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 34409 Query 178 AGGGGCAAGTGGAATTCCTAGTGT----------AGCGGTGAAATGCGTAGATATTAGGA 227 || || ||||||||| | |||| | |||||||| | || | | | Sbjct 34408 AGAGGAGAGTGGAATTTCGTGTGTCTTTTAAGAGAAGGGTGAAATCTCGAAATCTACGAA 34349 Query 228 GGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGT 287 ||||| ||| |||||||| ||| |||| || ||| ||| || ||||||| | Sbjct 34348 GGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCAT 34289 Query 288 GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 34288 GGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 34239 >seq17499 Length=11481 Score = 168 bits (186), Expect = 2e-39 Identities = 244/342 (71%), Gaps = 2/342 (1%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| || |||||| |||||||||| || ||||||| ||| || || Sbjct 7226 TGGGGAAAAAGCATCGACTAACTCTGTGCCAGCAGTCGTTGTAATACAGAGGATGCAAGA 7285 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 ||||| || ||| | | ||||||||| || ||||||| || ||| ||| | || ||| Sbjct 7286 GTTATTCGAAATGATTAGGCGTAAAGCGTCTATAGGTGGCTTTTTATGTCCGCTGTAAAA 7345 Query 125 GGCTATGGCTCAACCCCGGGACTG-CTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGC 183 || |||||||||| || || | | | |||||| | | | |||| | |||||| Sbjct 7346 TCCTCGGGCTCAACCCTGG-ACAGACGGTGGAAACTACCAAGATGGAGTATGGTAGGGGC 7404 Query 184 AAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGA 243 || |||||| ||| |||| | ||||| ||||| || ||| |||||||| ||||| Sbjct 7405 AAAGGGAATTTTCGGTGGAGCGATAAAATGTGTAGAGATCGGGAAGAACACCAACGGCGA 7464 Query 244 AGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGAT 303 | || | |||| | | ||||||||| | |||||| ||||||| || ||| Sbjct 7465 AAGCACTCTACTGGGCCGACACTGACACTAGGAGACGAAAGTTAGGGGAGCGAATGAGAT 7524 Query 304 TAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345 ||||||||| ||||||| | ||||||||||| |||||||| Sbjct 7525 TAGATACCCCAGTAGTCCTAGTCGTAAACGATGGATACTAGG 7566 >seq10820 Length=75845 Score = 116 bits (128), Expect = 9e-24 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 154 GAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATG 213 |||||| | ||| |||| | |||||||| |||||| | ||| ||| ||||||| Sbjct 62870 GAAACTACCAAGCTGGAGTATGGTAGGGGCAAAGGGAATTTCCGGTGGAGCAATGAAATG 62811 Query 214 CGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTG 273 ||||| ||| ||| |||||||| |||||| | |||||| | | ||||| ||| Sbjct 62810 TGTAGAGATTGGGAAGAACACCAACGGCGAAAGAACTCTGCTGGGCCGACACTGATACTA 62751 Query 274 AGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACG 333 | ||||||| ||||||| || |||||||||||| ||||||| | |||||||| Sbjct 62750 GGAGACGAAAGCTAGGGGAGCGAATGAGATTAGATACCCCAGTAGTCCTAGTCGTAAACG 62691 Query 334 ATGAATACTAGG 345 ||| |||||||| Sbjct 62690 ATGGATACTAGG 62679 Score = 105 bits (116), Expect = 2e-20 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 || ||||||| |||| ||||||||| |||||||||| ||||||||||| ||| || Sbjct 68897 TATTTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGTCGCGGTAATACAGAGGATGC 68838 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 || ||||| |||||| | | ||||||||| || ||| |||| || ||| ||| | || Sbjct 68837 AAGAGTTATTCGGAATGATTAGGCGTAAAGCGTCTGTATGTGGCTTTTTATGTCCGCTGT 68778 Query 121 GAAAGGCTATGGCTCAACCCCGG 143 ||| || |||||||||| || Sbjct 68777 AAAATCCTCGGGCTCAACCCTGG 68755 >seq10262 Length=73263 Score = 89.7 bits (98), Expect = 1e-15 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 || ||| ||| || ||||||| |||||||| |||| |||||||||||||||||||||| Sbjct 4594 ACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACATGATTAGATACCCTGGTAGTCCAT 4653 Query 324 GCCGTAAACGATGA 337 | |||||||||||| Sbjct 4654 GTCGTAAACGATGA 4667 >seq42952 Length=753 Score = 84.2 bits (92), Expect = 5e-14 Identities = 104/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 205 GGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAA 264 ||||||||| | ||| || | | |||||| | ||||| | |||||||| | | Sbjct 709 GGTGAAATGTGAAGAGATCGGAAAGAACACTAACTGCGAAAGTACTCTGCTGGACCGACA 650 Query 265 CTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACG 324 ||||||||||| | ||||| ||||||| || ||||||||||||| ||||| | | Sbjct 649 CTGACACTGAGAGACTAAAGCTAGGGGAGCGAATGGGATTAGATACCC-AGTAGTTCTAG 591 Query 325 CCGTAAACGATGAATACTAGG 345 ||||||| |||| | |||||| Sbjct 590 CCGTAAATGATGGAAACTAGG 570 >seq2387 Length=168538 Score = 84.2 bits (92), Expect = 5e-14 Identities = 104/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 205 GGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAA 264 ||||||||| | ||| || | | |||||| | ||||| | |||||||| | | Sbjct 56106 GGTGAAATGTGAAGAGATCGGAAAGAACACTAACTGCGAAAGTACTCTGCTGGACCGACA 56047 Query 265 CTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACG 324 ||||||||||| | ||||| ||||||| || ||||||||||||| ||||| | | Sbjct 56046 CTGACACTGAGAGACTAAAGCTAGGGGAGCGAATGGGATTAGATACCC-AGTAGTTCTAG 55988 Query 325 CCGTAAACGATGAATACTAGG 345 ||||||| |||| | |||||| Sbjct 55987 CCGTAAATGATGGAAACTAGG 55967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202267664384