Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq10548 203 8e-50
seq2344 201 3e-49
seq11912 185 2e-44
seq17499 168 2e-39
seq10820 116 9e-24
seq10262 89.7 1e-15
seq42952 84.2 5e-14
seq2387 84.2 5e-14
>seq10548
Length=46761
Score = 203 bits (224), Expect = 8e-50
Identities = 288/405 (71%), Gaps = 25/405 (6%)
Strand=Plus/Minus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|| ||| |||| ||||||||| |||||||||||||||||||||| ||| || |||
Sbjct 20915 TGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 20856
Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124
|||||||| ||||||||| || ||||||| || ||||||| | || |||
Sbjct 20855 CTTATCCGG--------GGCGTAAAGCGTCTGTAGGTGCCTTTTTAAGTCCGCCGTCAAA 20804
Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184
| | ||| ||| | |||||| | ||| |||| | | |||||||
Sbjct 20803 TCCCAGGGC-------CGG--------TGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 20759
Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244
|||||| | ||| ||||||||||||||||| || | | ||| |||| ||||||
Sbjct 20758 GAGGGAATTTCCGGTGGTGCGGTGAAATGCGTAGAGATCGGAAAGAAGACCAACGGCGAA 20699
Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304
|| |||||| | | |||||||||||| ||||||| |||||||| || |||||
Sbjct 20698 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCATGGGGAGCGAATGGGATT 20639
Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363
||||| || ||||||| ||||||||||||| |||||||| | | | ||| || |
Sbjct 20638 AGATAGCCCTGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 20580
Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
| | |||| | ||| ||||| ||||||| || |||||||||||
Sbjct 20579 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 20535
>seq2344
Length=172810
Score = 201 bits (222), Expect = 3e-49
Identities = 253/345 (73%), Gaps = 2/345 (1%)
Strand=Plus/Minus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|| ||| |||| ||||||||| |||||| ||||||||||||||| ||| | |||
Sbjct 24956 TGGGGAATAAGCATCGGCTAACTCTGTGCCAACAGCCGCGGTAATACAGAGGATACAAGC 24897
Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124
|||||||| ||| | | || |||||| || |||||||| || ||||||| | || |||
Sbjct 24896 GTTATCCGAAATGATTAGGTGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 24837
Query 125 GGCTATGGCTCAACCCCGGGACTGCTT-TTGAAACTGCAGGGCTAGAGTGCAGGAGGGGC 183
| |||||||||||| || || | | || ||||| | ||| |||| | | ||||||
Sbjct 24836 TCCCATGGCTCAACCCTGG-ACAGGTGGTTAAAACTACCAAGCTGGAGTACGGTAGGGGC 24778
Query 184 AAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGA 243
| |||||| || |||||||||||| ||||| | || | |||||||| || ||
Sbjct 24777 AGAGGGAATTTTCGGTAGAGCGGTGAAATGTGTAGAGGTCAGAAAGAACACCAACGGTGA 24718
Query 244 AGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGAT 303
| || |||||| | |||||||||||| ||||||| | |||| || |||
Sbjct 24717 AAGCACTCTGCTGGGTCGACACTGACACTGAGAGACGAAAGCTAGTGGAGGGAATGGGAA 24658
Query 304 TAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT 348
||||||||| | ||||| ||||||||||||| |||||||| ||
Sbjct 24657 TAGATACCCCAGCAGTCCTAGCCGTAAACGATGGATACTAGGCGT 24613
>seq11912
Length=37563
Score = 185 bits (204), Expect = 2e-44
Identities = 252/350 (72%), Gaps = 20/350 (6%)
Strand=Plus/Minus
Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61
||| ||||| |||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 34582 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 34523
Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121
|| ||| | |||||| ||||||||||||||| |||||| ||| | || | |||
Sbjct 34522 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 34463
Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177
|||| | | | || | | ||| |||| | ||||| | || || |||||
Sbjct 34462 AAAGTC---GCCAAAAACTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 34409
Query 178 AGGGGCAAGTGGAATTCCTAGTGT----------AGCGGTGAAATGCGTAGATATTAGGA 227
|| || ||||||||| | |||| | |||||||| | || | | |
Sbjct 34408 AGAGGAGAGTGGAATTTCGTGTGTCTTTTAAGAGAAGGGTGAAATCTCGAAATCTACGAA 34349
Query 228 GGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGT 287
||||| ||| |||||||| ||| |||| || ||| ||| || ||||||| |
Sbjct 34348 GGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCAT 34289
Query 288 GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337
||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 34288 GGGGAGCGAACAGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 34239
>seq17499
Length=11481
Score = 168 bits (186), Expect = 2e-39
Identities = 244/342 (71%), Gaps = 2/342 (1%)
Strand=Plus/Plus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|| ||| |||| || |||||| |||||||||| || ||||||| ||| || ||
Sbjct 7226 TGGGGAAAAAGCATCGACTAACTCTGTGCCAGCAGTCGTTGTAATACAGAGGATGCAAGA 7285
Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124
||||| || ||| | | ||||||||| || ||||||| || ||| ||| | || |||
Sbjct 7286 GTTATTCGAAATGATTAGGCGTAAAGCGTCTATAGGTGGCTTTTTATGTCCGCTGTAAAA 7345
Query 125 GGCTATGGCTCAACCCCGGGACTG-CTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGC 183
|| |||||||||| || || | | | |||||| | | | |||| | ||||||
Sbjct 7346 TCCTCGGGCTCAACCCTGG-ACAGACGGTGGAAACTACCAAGATGGAGTATGGTAGGGGC 7404
Query 184 AAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGA 243
|| |||||| ||| |||| | ||||| ||||| || ||| |||||||| |||||
Sbjct 7405 AAAGGGAATTTTCGGTGGAGCGATAAAATGTGTAGAGATCGGGAAGAACACCAACGGCGA 7464
Query 244 AGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGAT 303
| || | |||| | | ||||||||| | |||||| ||||||| || |||
Sbjct 7465 AAGCACTCTACTGGGCCGACACTGACACTAGGAGACGAAAGTTAGGGGAGCGAATGAGAT 7524
Query 304 TAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGG 345
||||||||| ||||||| | ||||||||||| ||||||||
Sbjct 7525 TAGATACCCCAGTAGTCCTAGTCGTAAACGATGGATACTAGG 7566
>seq10820
Length=75845
Score = 116 bits (128), Expect = 9e-24
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 154 GAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATG 213
|||||| | ||| |||| | |||||||| |||||| | ||| ||| |||||||
Sbjct 62870 GAAACTACCAAGCTGGAGTATGGTAGGGGCAAAGGGAATTTCCGGTGGAGCAATGAAATG 62811
Query 214 CGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTG 273
||||| ||| ||| |||||||| |||||| | |||||| | | ||||| |||
Sbjct 62810 TGTAGAGATTGGGAAGAACACCAACGGCGAAAGAACTCTGCTGGGCCGACACTGATACTA 62751
Query 274 AGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACG 333
| ||||||| ||||||| || |||||||||||| ||||||| | ||||||||
Sbjct 62750 GGAGACGAAAGCTAGGGGAGCGAATGAGATTAGATACCCCAGTAGTCCTAGTCGTAAACG 62691
Query 334 ATGAATACTAGG 345
||| ||||||||
Sbjct 62690 ATGGATACTAGG 62679
Score = 105 bits (116), Expect = 2e-20
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60
|| ||||||| |||| ||||||||| |||||||||| ||||||||||| ||| ||
Sbjct 68897 TATTTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGTCGCGGTAATACAGAGGATGC 68838
Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120
|| ||||| |||||| | | ||||||||| || ||| |||| || ||| ||| | ||
Sbjct 68837 AAGAGTTATTCGGAATGATTAGGCGTAAAGCGTCTGTATGTGGCTTTTTATGTCCGCTGT 68778
Query 121 GAAAGGCTATGGCTCAACCCCGG 143
||| || |||||||||| ||
Sbjct 68777 AAAATCCTCGGGCTCAACCCTGG 68755
>seq10262
Length=73263
Score = 89.7 bits (98), Expect = 1e-15
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323
|| ||| ||| || ||||||| |||||||| |||| ||||||||||||||||||||||
Sbjct 4594 ACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACATGATTAGATACCCTGGTAGTCCAT 4653
Query 324 GCCGTAAACGATGA 337
| ||||||||||||
Sbjct 4654 GTCGTAAACGATGA 4667
>seq42952
Length=753
Score = 84.2 bits (92), Expect = 5e-14
Identities = 104/141 (74%), Gaps = 1/141 (1%)
Strand=Plus/Minus
Query 205 GGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAA 264
||||||||| | ||| || | | |||||| | ||||| | |||||||| | |
Sbjct 709 GGTGAAATGTGAAGAGATCGGAAAGAACACTAACTGCGAAAGTACTCTGCTGGACCGACA 650
Query 265 CTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACG 324
||||||||||| | ||||| ||||||| || ||||||||||||| ||||| | |
Sbjct 649 CTGACACTGAGAGACTAAAGCTAGGGGAGCGAATGGGATTAGATACCC-AGTAGTTCTAG 591
Query 325 CCGTAAACGATGAATACTAGG 345
||||||| |||| | ||||||
Sbjct 590 CCGTAAATGATGGAAACTAGG 570
>seq2387
Length=168538
Score = 84.2 bits (92), Expect = 5e-14
Identities = 104/141 (74%), Gaps = 1/141 (1%)
Strand=Plus/Minus
Query 205 GGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAA 264
||||||||| | ||| || | | |||||| | ||||| | |||||||| | |
Sbjct 56106 GGTGAAATGTGAAGAGATCGGAAAGAACACTAACTGCGAAAGTACTCTGCTGGACCGACA 56047
Query 265 CTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACG 324
||||||||||| | ||||| ||||||| || ||||||||||||| ||||| | |
Sbjct 56046 CTGACACTGAGAGACTAAAGCTAGGGGAGCGAATGGGATTAGATACCC-AGTAGTTCTAG 55988
Query 325 CCGTAAACGATGAATACTAGG 345
||||||| |||| | ||||||
Sbjct 55987 CCGTAAATGATGGAAACTAGG 55967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1202267664384
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |