Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29]
77,488 sequences; 1,748,252,795 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq14700 188 2e-45
seq4597 183 1e-43
seq3724 125 2e-26
seq3752 111 5e-22
seq269 111 5e-22
seq1693 107 6e-21
seq14918 100 1e-18
seq7767 95.1 4e-17
seq7515 91.5 5e-16
seq302 89.7 2e-15
seq4725 84.2 7e-14
seq17323 77.0 1e-11
seq3915 77.0 1e-11
>seq14700
Length=25542
Score = 188 bits (208), Expect = 2e-45
Identities = 397/583 (68%), Gaps = 38/583 (7%)
Strand=Plus/Minus
Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61
|||||| | ||||| | ||| ||| | | |||||||| | |||||||| |||||
Sbjct 16029 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 15970
Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121
||||||||||| | ||| | || |||||||||||||| ||| |||||||| |||
Sbjct 15969 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 15910
Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181
|| ||||||| ||||| ||||||||||| || | | ||| || ||||||||||||
Sbjct 15909 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 15850
Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236
|||||| || ||| || ||| | || |||| |||||| |||||||||
Sbjct 15849 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 15795
Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287
|| ||| | | ||| ||||||| | |||||||| |||| |
Sbjct 15794 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 15737
Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336
| ||| | || | || |||||| ||||| | |||| | | | |
Sbjct 15736 CCTCAAAATAACAGGGGTCGAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTC 15677
Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396
|||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | ||
Sbjct 15676 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 15619
Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456
|| || | ||| ||||||| |||| ||| || | |||||||||| | || |||||
Sbjct 15618 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 15560
Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516
|||||||| |||||||| ||||| || ||| || || | |||| |||| |
Sbjct 15559 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 15501
Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558
|| ||||||| ||||||| | | ||| ||||||||||||||
Sbjct 15500 CTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 15459
Score = 113 bits (124), Expect = 2e-22
Identities = 154/209 (74%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 351 CCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGC 410
||||| | ||||||||||||| ||||||| ||| ||| | | || || || | |||
Sbjct 24209 CCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGC 24152
Query 411 TAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTC 470
||||||| |||| ||| || | |||||||||| | || ||||||||||||| |||||
Sbjct 24151 AGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTC 24093
Query 471 ACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTG 530
||| ||||| || ||| || || | |||| |||| ||| ||||||| |||
Sbjct 24092 ACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTGTG 24034
Query 531 GGATCATTTATATG-ATCGGTAGGGGAGC 558
|||| | | ||| ||||||||||||||
Sbjct 24033 GGAT-GTAAAAATGCATCGGTAGGGGAGC 24006
>seq4597
Length=187609
Score = 183 bits (202), Expect = 1e-43
Identities = 323/461 (70%), Gaps = 26/461 (6%)
Strand=Plus/Minus
Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93
||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| ||||
Sbjct 17323 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 17264
Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153
|| |||||||||| |||| | ||||| |||||||| ||||| ||||||||||||||
Sbjct 17263 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 17204
Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213
|| ||| | ||| |||||||||| || ||||| |||||| |||| || | | ||
Sbjct 17203 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 17146
Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACCAAAC 267
| || | | ||||||||||| |||||||| | |||| || |||||||| |
Sbjct 17145 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACC 17086
Query 268 CATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTG 321
| | ||||||||||| | || ||| || ||| | || | | |||||
Sbjct 17085 CCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTG----GGGTG 17030
Query 322 CTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381
||||| ||| ||||||| || | || || | ||||||| ||| || |
Sbjct 17029 CTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATC 16970
Query 382 GCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGC 439
|| ||| || || |||| |||| || | |||| | |||| || |||||||||||
Sbjct 16969 ACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGC 16914
Query 440 AGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480
||||| || ||| |||| |||||| |||||||| ||| ||
Sbjct 16913 AGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 16874
>seq3724
Length=128892
Score = 125 bits (138), Expect = 2e-26
Identities = 184/254 (72%), Gaps = 6/254 (2%)
Strand=Plus/Minus
Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365
|||||| ||||| | |||| | | | ||||||| || || ||||| | ||||||
Sbjct 64086 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAACCCGGATCACCAGCTA 64027
Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425
||||||| ||||||| ||| ||| | | || || || | ||| ||||||| ||||
Sbjct 64026 AGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGCAGAGACAGCCAGGAG 63969
Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTC 485
||| || | |||||||||| | || ||||||||||||| |||||||| ||||| ||
Sbjct 63968 GTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTC 63910
Query 486 GGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATG- 544
||| || || | |||| |||| ||| ||||||| ||||||| | | |||
Sbjct 63909 TTGCGCCGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTGTGGGAT-GTAAAAATGC 63852
Query 545 ATCGGTAGGGGAGC 558
||||||||||||||
Sbjct 63851 ATCGGTAGGGGAGC 63838
>seq3752
Length=125219
Score = 111 bits (122), Expect = 5e-22
Identities = 136/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61
|||||| | ||||| | ||| ||| | | |||||||| |||||||| |||||
Sbjct 104197 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACTTGGGTGATCTATCCATG 104256
Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121
||| ||||||| | ||| | || |||||||||||||| ||| |||||||| |||
Sbjct 104257 ACCATGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 104316
Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181
|| | ||||| ||||| ||||||||||| || | | | | || ||||||||||||
Sbjct 104317 AGCGTATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAGCCCAGAGCTAGCTGGTTCTCC 104376
Query 182 CCGAAA 187
||| ||
Sbjct 104377 CCGTAA 104382
>seq269
Length=437995
Score = 111 bits (122), Expect = 5e-22
Identities = 126/168 (75%), Gaps = 1/168 (1%)
Strand=Plus/Plus
Query 37 CCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGG-TAACACGCCCTGGAGG 95
||| | ||| | |||||| || || || | ||||| | | ||||| ||| ||||||
Sbjct 91868 CCCAACACCGATCGATCTAGCCTTGAGCAAGTTGAAGATACCTCTAACAGGCCTTGGAGG 91927
Query 96 TCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAA 155
| |||||||| |||| | ||||| |||||||| | ||| |||||||||||||| ||
Sbjct 91928 ACTGAACCCACGTATGTGGCAAAATACGGGGATGACTTTTGGCTAGGGGTGAAAGGCCAA 91987
Query 156 ACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203
|||| ||||| |||| ||||| ||| |||| |||||| |||| ||
Sbjct 91988 CCAAAATTGGATATAGTTGGTTTTCTGTGAAATCTATTTCAGTAGAGC 92035
>seq1693
Length=196548
Score = 107 bits (118), Expect = 6e-21
Identities = 116/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 33 TAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 92
|||||||||| | |||||||| ||||| ||||||||||| | ||| | || |||
Sbjct 116209 TAGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGG 116268
Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152
|||||||| || || |||||||| ||| || ||||||| | | | ||||||||||| ||
Sbjct 116269 AGGTCCGAGCCGGCTGATGTTGAAGAATCAGTGGATGAGTTATAGTTAGGGGTGAAATGC 116328
Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAA 186
| | ||| || ||| ||||||||||| ||
Sbjct 116329 CACTCGAACCCAGAGCTAGATGGTTCTCTCCAAA 116362
>seq14918
Length=21326
Score = 100 bits (110), Expect = 1e-18
Identities = 125/170 (74%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93
|||| |||| | | ||| || ||||| |||| |||| | || ||||| ||| ||||
Sbjct 7081 GACCTGAAATCGATCGATTTAACCATGAGCAGGTTGAATAGAGCTCTAACATGCCTTGGA 7140
Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153
| | |||||||| |||| | ||||| |||||||| ||||| ||||||||||||||
Sbjct 7141 GCACTGAACCCACATATGTGGCAAAATACGGGGATGATTTGTGGCTAGGGGTGAAAGGCC 7200
Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203
|| ||| | ||| ||| |||||| || ||| |||||| ||| |||
Sbjct 7201 AACCAAGATCGGATATAACTGGTTTTCCGTTAAATCTATTTCAGTAATGC 7250
>seq7767
Length=67460
Score = 95.1 bits (104), Expect = 4e-17
Identities = 101/132 (77%), Gaps = 1/132 (1%)
Strand=Plus/Minus
Query 50 GATCTACCCATGGCCAGGATGAAGGT-GCGGTAACACGCCCTGGAGGTCCGAACCCACTA 108
|||||| ||||| |||| ||||| | || || || ||| |||||| ||||||||||
Sbjct 37325 GATCTAGCCATGAGCAGGTTGAAGATAGCTCTATCAGGCCTTGGAGGACCGAACCCACGT 37266
Query 109 ATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAA 168
|||| | ||||| || ||||| ||||| ||||||||||||| ||| ||| | || |
Sbjct 37265 ATGTGGCAAAATAAGAAGATGACTTGTGGCTAGGGGTGAAAGGTTAACCAAGATCGGGTA 37206
Query 169 TAGCTGGTTCTC 180
||||| ||| ||
Sbjct 37205 TAGCTAGTTTTC 37194
>seq7515
Length=70154
Score = 91.5 bits (100), Expect = 5e-16
Identities = 121/167 (72%), Gaps = 1/167 (1%)
Strand=Plus/Plus
Query 22 GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTA 81
||| ||| | | |||||||| | |||||||| | ||| ||| ||| ||| | |||
Sbjct 39908 GTCACTGCTTATGGACCCGAACCTTGGTGATCTATCTATGACCAAGATAAAGCTTGGGTG 39967
Query 82 ACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAG 141
| || || ||||| ||| | |||||||||||| ||| || | ||||| | ||| |||
Sbjct 39968 AAACTAAGTGTAGGTCAGAATCGACTAATGTTGAAGAATCAGTGTATGAGTTATGGTTAG 40027
Query 142 -GGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187
|||||||| | | ||||| ||| ||| |||||||| ||||||
Sbjct 40028 AGGGTGAAATACCACTCAAACCCAGAACTAGTTGGTTCTCCCCGAAA 40074
>seq302
Length=505109
Score = 89.7 bits (98), Expect = 2e-15
Identities = 99/130 (76%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 351 CCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGC 410
||||| | ||||||||||||| ||||||| ||| ||| | | || || || | |||
Sbjct 108033 CCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGC 107976
Query 411 TAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTC 470
||||||| | || ||| || | |||||||||| | || ||||||||||||| |||||
Sbjct 107975 AGAGACAGCCATGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTC 107917
Query 471 ACTAGTCGAG 480
||| |||||
Sbjct 107916 ACTGATCGAG 107907
>seq4725
Length=106527
Score = 84.2 bits (92), Expect = 7e-14
Identities = 104/141 (74%), Gaps = 1/141 (1%)
Strand=Plus/Plus
Query 48 GTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACT 107
|||||||| |||| ||||||||||| | ||| | || ||||||| | || ||| |
Sbjct 52096 GTGATCTATCCATAACCAGGATGAAGCTTAGGTGAAACTAAGTGGAGGTTCAAAACCAAT 52155
Query 108 A-ATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGA 166
|||||||||||| | ||||||| ||||| || || ||||| || | ||| |||
Sbjct 52156 TGATGTTGAAAAATCAACGGATGAGTTGTGGTTAAGGATGAAATGCCATTTGAACCCGGA 52215
Query 167 AATAGCTGGTTCTCTCCGAAA 187
||| |||||||| ||||||
Sbjct 52216 GCTAGTTGGTTCTCCCCGAAA 52236
>seq17323
Length=13908
Score = 77.0 bits (84), Expect = 1e-11
Identities = 101/140 (72%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 48 GTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACT 107
|||||||| ||||| |||| || ||| | ||| | || ||||||| | |||| | |
Sbjct 9216 GTGATCTATCCATGACCAGAATTAAGTTTGGGTGAAACTAAGTGGAGGTTCAAACCGATT 9275
Query 108 AATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAA 167
|| ||||| ||| || ||||| | ||| || |||||||| || | | ||| ||
Sbjct 9276 GATATTGAATAATAAGCAGATGATTTATGGTTATGGGTGAAATGCCACTCGAACCCAGAG 9335
Query 168 ATAGCTGGTTCTCTCCGAAA 187
|||||||||||| ||||||
Sbjct 9336 CTAGCTGGTTCTCCCCGAAA 9355
>seq3915
Length=275794
Score = 77.0 bits (84), Expect = 1e-11
Identities = 80/105 (76%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 48 GTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACT 107
|||||||| ||||| ||| |||||| | ||||| || ||||||| || || |||
Sbjct 193912 GTGATCTATCCATGCCCAAGATGAAACTTGGGTAAAACTAAGTGGAGGTTTGAGCCGACT 193853
Query 108 AATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152
|||||||| ||| || | | ||| ||||| ||||||||||| ||
Sbjct 193852 GATGTTGAAGAATCAGCGAACGAGTTGTGGTTAGGGGTGAAATGC 193808
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1688290762752
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