Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq14700 188 2e-45 seq4597 183 1e-43 seq3724 125 2e-26 seq3752 111 5e-22 seq269 111 5e-22 seq1693 107 6e-21 seq14918 100 1e-18 seq7767 95.1 4e-17 seq7515 91.5 5e-16 seq302 89.7 2e-15 seq4725 84.2 7e-14 seq17323 77.0 1e-11 seq3915 77.0 1e-11 >seq14700 Length=25542 Score = 188 bits (208), Expect = 2e-45 Identities = 397/583 (68%), Gaps = 38/583 (7%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 16029 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 15970 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 15969 ACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 15910 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||||||||||| || | | ||| || |||||||||||| Sbjct 15909 AGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 15850 Query 182 CCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTT 236 |||||| || ||| || ||| | || |||| |||||| ||||||||| Sbjct 15849 CCGAAATGCGTTGAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTT 15795 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------G 287 || ||| | | ||| ||||||| | |||||||| |||| | Sbjct 15794 TCGGTGCGGGCCGCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGA 15737 Query 288 CATCAGTTTTACCGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCC 336 | ||| | || | || |||||| ||||| | |||| | | | | Sbjct 15736 CCTCAAAATAACAGGGGTCGAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTC 15677 Query 337 GAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAA 396 |||||| || | ||||| | ||||||||||||| ||||||| ||| ||| | | || Sbjct 15676 GAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AA 15619 Query 397 CGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGA 456 || || | ||| ||||||| |||| ||| || | |||||||||| | || ||||| Sbjct 15618 GGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGA 15560 Query 457 GTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGT 516 |||||||| |||||||| ||||| || ||| || || | |||| |||| | Sbjct 15559 GTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGAT 15501 Query 517 CTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 || ||||||| ||||||| | | ||| |||||||||||||| Sbjct 15500 CTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGGGGAGC 15459 Score = 113 bits (124), Expect = 2e-22 Identities = 154/209 (74%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 351 CCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGC 410 ||||| | ||||||||||||| ||||||| ||| ||| | | || || || | ||| Sbjct 24209 CCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGC 24152 Query 411 TAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTC 470 ||||||| |||| ||| || | |||||||||| | || ||||||||||||| ||||| Sbjct 24151 AGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTC 24093 Query 471 ACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTG 530 ||| ||||| || ||| || || | |||| |||| ||| ||||||| ||| Sbjct 24092 ACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTGTG 24034 Query 531 GGATCATTTATATG-ATCGGTAGGGGAGC 558 |||| | | ||| |||||||||||||| Sbjct 24033 GGAT-GTAAAAATGCATCGGTAGGGGAGC 24006 >seq4597 Length=187609 Score = 183 bits (202), Expect = 1e-43 Identities = 323/461 (70%), Gaps = 26/461 (6%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 17323 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 17264 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 17263 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 17204 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 17203 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 17146 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACCAAAC 267 | || | | ||||||||||| |||||||| | |||| || |||||||| | Sbjct 17145 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACC 17086 Query 268 CATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTG 321 | | ||||||||||| | || ||| || ||| | || | | ||||| Sbjct 17085 CCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTG----GGGTG 17030 Query 322 CTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381 ||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 17029 CTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATC 16970 Query 382 GCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGC 439 || ||| || || |||| |||| || | |||| | |||| || ||||||||||| Sbjct 16969 ACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGC 16914 Query 440 AGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||||| || ||| |||| |||||| |||||||| ||| || Sbjct 16913 AGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 16874 >seq3724 Length=128892 Score = 125 bits (138), Expect = 2e-26 Identities = 184/254 (72%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || || ||||| | |||||| Sbjct 64086 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAACCCGGATCACCAGCTA 64027 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| ||| ||| | | || || || | ||| ||||||| |||| Sbjct 64026 AGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGCAGAGACAGCCAGGAG 63969 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTC 485 ||| || | |||||||||| | || ||||||||||||| |||||||| ||||| || Sbjct 63968 GTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTC 63910 Query 486 GGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATG- 544 ||| || || | |||| |||| ||| ||||||| ||||||| | | ||| Sbjct 63909 TTGCGCCGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTGTGGGAT-GTAAAAATGC 63852 Query 545 ATCGGTAGGGGAGC 558 |||||||||||||| Sbjct 63851 ATCGGTAGGGGAGC 63838 >seq3752 Length=125219 Score = 111 bits (122), Expect = 5e-22 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| |||||||| ||||| Sbjct 104197 CGAGTCTTCATAGGGCAATTGTCACTGCTTATGGACCCGAACTTGGGTGATCTATCCATG 104256 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||| ||||||| | ||| | || |||||||||||||| ||| |||||||| ||| Sbjct 104257 ACCATGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATC 104316 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || | ||||| ||||| ||||||||||| || | | | | || |||||||||||| Sbjct 104317 AGCGTATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAGCCCAGAGCTAGCTGGTTCTCC 104376 Query 182 CCGAAA 187 ||| || Sbjct 104377 CCGTAA 104382 >seq269 Length=437995 Score = 111 bits (122), Expect = 5e-22 Identities = 126/168 (75%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 37 CCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGG-TAACACGCCCTGGAGG 95 ||| | ||| | |||||| || || || | ||||| | | ||||| ||| |||||| Sbjct 91868 CCCAACACCGATCGATCTAGCCTTGAGCAAGTTGAAGATACCTCTAACAGGCCTTGGAGG 91927 Query 96 TCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAA 155 | |||||||| |||| | ||||| |||||||| | ||| |||||||||||||| || Sbjct 91928 ACTGAACCCACGTATGTGGCAAAATACGGGGATGACTTTTGGCTAGGGGTGAAAGGCCAA 91987 Query 156 ACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 |||| ||||| |||| ||||| ||| |||| |||||| |||| || Sbjct 91988 CCAAAATTGGATATAGTTGGTTTTCTGTGAAATCTATTTCAGTAGAGC 92035 >seq1693 Length=196548 Score = 107 bits (118), Expect = 6e-21 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 33 TAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 92 |||||||||| | |||||||| ||||| ||||||||||| | ||| | || ||| Sbjct 116209 TAGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGG 116268 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 |||||||| || || |||||||| ||| || ||||||| | | | ||||||||||| || Sbjct 116269 AGGTCCGAGCCGGCTGATGTTGAAGAATCAGTGGATGAGTTATAGTTAGGGGTGAAATGC 116328 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAA 186 | | ||| || ||| ||||||||||| || Sbjct 116329 CACTCGAACCCAGAGCTAGATGGTTCTCTCCAAA 116362 >seq14918 Length=21326 Score = 100 bits (110), Expect = 1e-18 Identities = 125/170 (74%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 |||| |||| | | ||| || ||||| |||| |||| | || ||||| ||| |||| Sbjct 7081 GACCTGAAATCGATCGATTTAACCATGAGCAGGTTGAATAGAGCTCTAACATGCCTTGGA 7140 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 | | |||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 7141 GCACTGAACCCACATATGTGGCAAAATACGGGGATGATTTGTGGCTAGGGGTGAAAGGCC 7200 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 || ||| | ||| ||| |||||| || ||| |||||| ||| ||| Sbjct 7201 AACCAAGATCGGATATAACTGGTTTTCCGTTAAATCTATTTCAGTAATGC 7250 >seq7767 Length=67460 Score = 95.1 bits (104), Expect = 4e-17 Identities = 101/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 50 GATCTACCCATGGCCAGGATGAAGGT-GCGGTAACACGCCCTGGAGGTCCGAACCCACTA 108 |||||| ||||| |||| ||||| | || || || ||| |||||| |||||||||| Sbjct 37325 GATCTAGCCATGAGCAGGTTGAAGATAGCTCTATCAGGCCTTGGAGGACCGAACCCACGT 37266 Query 109 ATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAA 168 |||| | ||||| || ||||| ||||| ||||||||||||| ||| ||| | || | Sbjct 37265 ATGTGGCAAAATAAGAAGATGACTTGTGGCTAGGGGTGAAAGGTTAACCAAGATCGGGTA 37206 Query 169 TAGCTGGTTCTC 180 ||||| ||| || Sbjct 37205 TAGCTAGTTTTC 37194 >seq7515 Length=70154 Score = 91.5 bits (100), Expect = 5e-16 Identities = 121/167 (72%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 22 GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTA 81 ||| ||| | | |||||||| | |||||||| | ||| ||| ||| ||| | ||| Sbjct 39908 GTCACTGCTTATGGACCCGAACCTTGGTGATCTATCTATGACCAAGATAAAGCTTGGGTG 39967 Query 82 ACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAG 141 | || || ||||| ||| | |||||||||||| ||| || | ||||| | ||| ||| Sbjct 39968 AAACTAAGTGTAGGTCAGAATCGACTAATGTTGAAGAATCAGTGTATGAGTTATGGTTAG 40027 Query 142 -GGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 |||||||| | | ||||| ||| ||| |||||||| |||||| Sbjct 40028 AGGGTGAAATACCACTCAAACCCAGAACTAGTTGGTTCTCCCCGAAA 40074 >seq302 Length=505109 Score = 89.7 bits (98), Expect = 2e-15 Identities = 99/130 (76%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 351 CCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGC 410 ||||| | ||||||||||||| ||||||| ||| ||| | | || || || | ||| Sbjct 108033 CCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGC 107976 Query 411 TAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTC 470 ||||||| | || ||| || | |||||||||| | || ||||||||||||| ||||| Sbjct 107975 AGAGACAGCCATGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTC 107917 Query 471 ACTAGTCGAG 480 ||| ||||| Sbjct 107916 ACTGATCGAG 107907 >seq4725 Length=106527 Score = 84.2 bits (92), Expect = 7e-14 Identities = 104/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 48 GTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACT 107 |||||||| |||| ||||||||||| | ||| | || ||||||| | || ||| | Sbjct 52096 GTGATCTATCCATAACCAGGATGAAGCTTAGGTGAAACTAAGTGGAGGTTCAAAACCAAT 52155 Query 108 A-ATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGA 166 |||||||||||| | ||||||| ||||| || || ||||| || | ||| ||| Sbjct 52156 TGATGTTGAAAAATCAACGGATGAGTTGTGGTTAAGGATGAAATGCCATTTGAACCCGGA 52215 Query 167 AATAGCTGGTTCTCTCCGAAA 187 ||| |||||||| |||||| Sbjct 52216 GCTAGTTGGTTCTCCCCGAAA 52236 >seq17323 Length=13908 Score = 77.0 bits (84), Expect = 1e-11 Identities = 101/140 (72%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 48 GTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACT 107 |||||||| ||||| |||| || ||| | ||| | || ||||||| | |||| | | Sbjct 9216 GTGATCTATCCATGACCAGAATTAAGTTTGGGTGAAACTAAGTGGAGGTTCAAACCGATT 9275 Query 108 AATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAA 167 || ||||| ||| || ||||| | ||| || |||||||| || | | ||| || Sbjct 9276 GATATTGAATAATAAGCAGATGATTTATGGTTATGGGTGAAATGCCACTCGAACCCAGAG 9335 Query 168 ATAGCTGGTTCTCTCCGAAA 187 |||||||||||| |||||| Sbjct 9336 CTAGCTGGTTCTCCCCGAAA 9355 >seq3915 Length=275794 Score = 77.0 bits (84), Expect = 1e-11 Identities = 80/105 (76%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 48 GTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACT 107 |||||||| ||||| ||| |||||| | ||||| || ||||||| || || ||| Sbjct 193912 GTGATCTATCCATGCCCAAGATGAAACTTGGGTAAAACTAAGTGGAGGTTTGAGCCGACT 193853 Query 108 AATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 |||||||| ||| || | | ||| ||||| ||||||||||| || Sbjct 193852 GATGTTGAAGAATCAGCGAACGAGTTGTGGTTAGGGGTGAAATGC 193808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688290762752