Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hibiscus_20syriacus_20[genbank_20GCA_5F001696755.1_202016-07-29] 77,488 sequences; 1,748,252,795 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq14700 107 4e-21 seq3752 107 4e-21 >seq14700 Length=25542 Score = 107 bits (118), Expect = 4e-21 Identities = 94/116 (81%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||||||| ||| || | ||| || ||| ||||||||||||||||| |||||| | | Sbjct 16537 TGCTGAATCCATGGGCAGACAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCGGA 16478 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||||||| ||| | ||||||| ||||| |||||||||||||||| ||||| Sbjct 16477 GGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 16422 >seq3752 Length=125219 Score = 107 bits (118), Expect = 4e-21 Identities = 170/239 (71%), Gaps = 11/239 (5%) Strand=Plus/Plus Query 14 GATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGT 73 ||| ||| ||||| | || ||| ||||| ||||||| ||| | ||| | |||||| Sbjct 103576 GATACCTAGGCGACCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCAGGGAGT 103635 Query 74 GAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATT 133 | ||| | | | |||||| ||||| | |||| || |||| ||| | | | Sbjct 103636 T-GAAAATAAGCGTAGATCCGGAGATTCCTGAATAGGTCAACC------TTTCGAAC--T 103686 Query 134 GCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCT 192 || |||||||| ||| || | ||| || ||| ||| |||| |||||||| || ||| Sbjct 103687 GC-TGCTGAATCCATGGGCAGACAAGAGACAACCTGGCAAACTAAAACATCTTAGAAGCC 103745 Query 193 GCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 | ||||||||||| ||| | ||||||| ||||| ||||||||||||| || ||||| Sbjct 103746 GGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGAGAGCAGCCT 103804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917688350208